Wall clock time and date at job start Sat Apr 11 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00495 * 2 1 4 4 H 1.48490 * 109.47334 * 270.00096 * 3 2 1 5 5 H 1.48499 * 109.46834 * 30.00241 * 3 2 1 6 6 H 1.48500 * 109.47065 * 149.99667 * 3 2 1 7 7 C 1.38819 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99987 * 174.80035 * 9 7 2 11 11 C 1.52998 * 109.54853 * 64.36038 * 10 9 7 12 12 N 1.46508 * 109.47000 * 54.46448 * 11 10 9 13 13 C 1.34777 * 119.99667 * 184.84241 * 12 11 10 14 14 O 1.21281 * 120.00314 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99315 * 180.02562 * 13 12 11 16 16 H 1.09003 * 108.56969 * 297.93497 * 15 13 12 17 17 C 1.51783 * 108.61264 * 180.02562 * 15 13 12 18 18 C 1.52989 * 110.88132 * 171.87496 * 17 15 13 19 19 N 1.47202 * 108.66171 * 86.47079 * 18 17 15 20 20 C 1.33376 * 120.42442 * 288.01667 * 19 18 17 21 21 O 1.21278 * 119.89089 * 180.30941 * 20 19 18 22 22 C 1.51424 * 120.21829 * 0.32914 * 20 19 18 23 23 C 1.51799 * 108.61821 * 55.73854 * 15 13 12 24 24 C 1.53183 * 109.54385 * 184.53955 * 10 9 7 25 25 C 1.53100 * 109.15716 * 63.06135 * 24 10 9 26 26 O 1.42906 * 109.48845 * 57.47209 * 25 24 10 27 27 C 1.42900 * 114.10117 * 298.89109 * 26 25 24 28 28 C 1.53092 * 109.41386 * 61.15435 * 27 26 25 29 29 H 0.97001 * 119.99726 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99896 * 354.79229 * 9 7 2 31 31 H 1.09000 * 109.47314 * 174.46560 * 11 10 9 32 32 H 1.08999 * 109.47020 * 294.46998 * 11 10 9 33 33 H 0.96997 * 119.99713 * 4.84413 * 12 11 10 34 34 H 1.08998 * 109.19610 * 292.23687 * 17 15 13 35 35 H 1.08998 * 109.19543 * 51.51606 * 17 15 13 36 36 H 1.09000 * 109.60480 * 206.21446 * 18 17 15 37 37 H 1.09000 * 109.60773 * 326.71665 * 18 17 15 38 38 H 0.96994 * 119.78977 * 108.04518 * 19 18 17 39 39 H 1.08997 * 109.63640 * 190.91126 * 22 20 19 40 40 H 1.09005 * 109.63541 * 311.30941 * 22 20 19 41 41 H 1.08998 * 109.22204 * 308.25018 * 23 15 13 42 42 H 1.08996 * 109.21938 * 67.60309 * 23 15 13 43 43 H 1.09001 * 109.52126 * 182.87567 * 24 10 9 44 44 H 1.08998 * 109.51827 * 303.06707 * 24 10 9 45 45 H 1.09004 * 109.40933 * 297.49803 * 25 24 10 46 46 H 1.08997 * 109.49311 * 177.51248 * 25 24 10 47 47 H 1.08997 * 109.48146 * 301.17587 * 27 26 25 48 48 H 1.08997 * 109.48916 * 181.14563 * 27 26 25 49 49 H 1.09002 * 109.52106 * 182.48365 * 28 27 26 50 50 H 1.08999 * 109.57367 * 62.32951 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0533 -3.6542 -0.1161 11 6 2.9493 -3.8433 1.1096 12 7 2.1416 -3.7324 2.3268 13 6 2.7363 -3.7680 3.5357 14 8 3.9401 -3.8922 3.6160 15 6 1.9053 -3.6545 4.7877 16 1 1.4075 -2.6848 4.7872 17 6 2.8290 -3.7237 5.9902 18 6 2.0682 -3.4136 7.2807 19 7 1.4652 -4.6589 7.7830 20 6 0.4222 -5.2050 7.1561 21 8 -0.0706 -6.2283 7.5815 22 6 -0.1483 -4.5519 5.9148 23 6 0.8449 -4.7405 4.7656 24 6 1.0552 -4.8128 -0.2047 25 6 0.2177 -4.6582 -1.4770 26 8 1.0817 -4.6177 -2.6146 27 6 2.0038 -3.5260 -2.6083 28 6 2.9146 -3.6363 -1.3827 29 1 -0.4850 0.8401 -0.0004 30 1 0.3585 -2.3898 0.0761 31 1 3.4149 -4.8281 1.0709 32 1 3.7231 -3.0755 1.1158 33 1 1.1788 -3.6334 2.2626 34 1 3.2555 -4.7245 6.0573 35 1 3.6340 -2.9995 5.8658 36 1 2.7578 -3.0152 8.0250 37 1 1.2845 -2.6839 7.0770 38 1 1.8284 -5.0849 8.5750 39 1 -1.0983 -5.0205 5.6581 40 1 -0.3022 -3.4885 6.0982 41 1 0.3090 -4.6995 3.8173 42 1 1.3258 -5.7136 4.8636 43 1 1.5967 -5.7582 -0.2393 44 1 0.4015 -4.7979 0.6674 45 1 -0.3557 -3.7328 -1.4230 46 1 -0.4643 -5.5035 -1.5685 47 1 1.4539 -2.5858 -2.5689 48 1 2.6087 -3.5557 -3.5145 49 1 3.5895 -2.7809 -1.3522 50 1 3.4956 -4.5567 -1.4411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733471689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:30 Heat of formation + Delta-G solvation = -144.315366 kcal Electronic energy + Delta-G solvation = -31541.473011 eV Core-core repulsion = 27374.138336 eV Total energy + Delta-G solvation = -4167.334675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62912 -40.85806 -40.11520 -37.59555 -37.14311 -35.27096 -34.80925 -33.70612 -32.07428 -31.97115 -30.92132 -29.01157 -27.28431 -25.90287 -25.09893 -24.45266 -23.65161 -22.40711 -20.91995 -20.65952 -20.08555 -19.08742 -18.58300 -18.15653 -17.47768 -17.18600 -16.99275 -16.69578 -16.31774 -16.26504 -15.91655 -15.66017 -15.35284 -15.25881 -15.08496 -14.77317 -14.53312 -14.38169 -14.11104 -13.70437 -13.57579 -13.45215 -13.16828 -13.14983 -12.91305 -12.84344 -12.80577 -12.66058 -12.45926 -12.22495 -12.08204 -11.89718 -11.73177 -11.67514 -11.37541 -11.11658 -11.00105 -10.87662 -10.67613 -10.30670 -10.12471 -9.87060 -8.94519 -7.88650 -5.14375 1.46315 1.50617 1.54693 1.61686 1.75604 2.35620 2.40449 2.58780 3.09031 3.44278 3.48828 3.61984 3.74462 3.78483 3.81400 3.89455 4.01075 4.16726 4.21176 4.25275 4.29861 4.44943 4.47417 4.49620 4.51590 4.63473 4.68433 4.73950 4.79120 4.81402 4.84584 4.90567 5.00143 5.06448 5.06575 5.11890 5.14955 5.23436 5.29258 5.31015 5.36133 5.60985 5.66444 5.89409 6.28128 6.33028 6.38437 6.70684 7.25167 7.36765 7.43106 8.11321 8.39101 9.33241 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.003615 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.248194 B = 7744.040820 C = 8990.903190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.056 4.056 3 Si 0.946 3.054 4 H -0.295 1.295 5 H -0.299 1.299 6 H -0.282 1.282 7 C -0.212 4.212 8 H 0.063 0.937 9 N -0.710 5.710 10 C 0.187 3.813 11 C 0.125 3.875 12 N -0.696 5.696 13 C 0.506 3.494 14 O -0.593 6.593 15 C -0.101 4.101 16 H 0.117 0.883 17 C -0.118 4.118 18 C 0.112 3.888 19 N -0.714 5.714 20 C 0.513 3.487 21 O -0.606 6.606 22 C -0.131 4.131 23 C -0.096 4.096 24 C -0.143 4.143 25 C 0.064 3.936 26 O -0.399 6.399 27 C 0.076 3.924 28 C -0.150 4.150 29 H 0.248 0.752 30 H 0.378 0.622 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.407 0.593 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.404 0.596 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.038 0.962 46 H 0.111 0.889 47 H 0.036 0.964 48 H 0.096 0.904 49 H 0.060 0.940 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 -8.190 9.315 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.249 4.249 3 Si 0.778 3.222 4 H -0.223 1.223 5 H -0.226 1.226 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.081 0.919 9 N -0.351 5.351 10 C 0.097 3.903 11 C -0.002 4.002 12 N -0.346 5.346 13 C 0.294 3.706 14 O -0.474 6.474 15 C -0.122 4.122 16 H 0.135 0.865 17 C -0.157 4.157 18 C -0.011 4.011 19 N -0.364 5.364 20 C 0.301 3.699 21 O -0.489 6.489 22 C -0.171 4.171 23 C -0.134 4.134 24 C -0.181 4.181 25 C -0.013 4.013 26 O -0.318 6.318 27 C -0.001 4.001 28 C -0.190 4.190 29 H 0.057 0.943 30 H 0.212 0.788 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.244 0.756 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.241 0.759 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.056 0.944 46 H 0.129 0.871 47 H 0.054 0.946 48 H 0.115 0.885 49 H 0.078 0.922 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.557 -8.683 9.223 12.763 hybrid contribution 0.204 1.478 0.221 1.508 sum 1.760 -7.205 9.444 12.008 Atomic orbital electron populations 1.69732 1.05775 1.25457 1.59769 1.25121 0.95912 0.99489 1.04385 0.85562 0.77807 0.81883 0.76973 1.22261 1.22583 1.20728 1.19161 0.90709 0.84784 1.39803 0.91922 1.42447 1.05633 0.99807 1.87193 1.20005 0.91892 0.86774 0.91676 1.21647 0.93971 0.99355 0.85235 1.45752 1.11592 1.72241 1.05005 1.21197 0.88284 0.75179 0.85957 1.90641 1.16763 1.52138 1.87890 1.21079 0.96468 1.02687 0.91992 0.86546 1.21591 0.97879 1.03250 0.92980 1.21980 0.98434 0.85155 0.95537 1.46020 1.32092 1.27408 1.30909 1.21034 0.79687 0.83713 0.85456 1.90725 1.62364 1.26986 1.68807 1.21977 0.99918 1.04095 0.91112 1.21140 0.95149 0.97696 0.99450 1.22315 0.98685 0.97999 0.99081 1.22587 0.91924 1.01813 0.84951 1.87798 1.50274 1.49594 1.44105 1.22352 0.90835 0.88972 0.97953 1.22409 0.98706 1.01854 0.96010 0.94318 0.78802 0.92106 0.94635 0.75625 0.92229 0.90226 0.86325 0.88406 0.75948 0.87621 0.86380 0.88860 0.92342 0.89476 0.89718 0.94391 0.87117 0.94589 0.88545 0.92167 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -51.82 13.06 21.65 0.28 -51.54 16 2 C -0.06 -2.86 5.50 84.86 0.47 -2.40 16 3 Si 0.95 43.30 29.55 68.60 2.03 45.33 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.21 -10.11 8.69 84.04 0.73 -9.38 16 8 H 0.06 3.06 6.78 -2.91 -0.02 3.04 16 9 N -0.71 -28.51 3.69 -302.80 -1.12 -29.62 16 10 C 0.19 6.03 0.41 3.73 0.00 6.03 16 11 C 0.12 4.07 4.40 86.38 0.38 4.45 16 12 N -0.70 -20.43 4.96 -463.05 -2.30 -22.72 16 13 C 0.51 15.00 7.14 87.66 0.63 15.63 16 14 O -0.59 -22.15 15.74 -3.03 -0.05 -22.20 16 15 C -0.10 -2.04 2.05 -12.34 -0.03 -2.07 16 16 H 0.12 2.05 7.88 -2.39 -0.02 2.04 16 17 C -0.12 -2.14 4.39 30.19 0.13 -2.01 16 18 C 0.11 1.25 6.47 86.24 0.56 1.81 16 19 N -0.71 -10.89 5.27 -462.58 -2.44 -13.33 16 20 C 0.51 10.88 7.07 88.10 0.62 11.51 16 21 O -0.61 -18.62 17.92 -3.02 -0.05 -18.68 16 22 C -0.13 -2.09 5.56 30.10 0.17 -1.92 16 23 C -0.10 -1.70 4.87 30.22 0.15 -1.55 16 24 C -0.14 -3.72 4.79 30.69 0.15 -3.58 16 25 C 0.06 1.80 6.67 72.02 0.48 2.28 16 26 O -0.40 -12.77 10.77 -148.98 -1.60 -14.38 16 27 C 0.08 2.49 6.68 72.01 0.48 2.97 16 28 C -0.15 -4.82 4.75 30.69 0.15 -4.67 16 29 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 30 H 0.38 16.36 6.90 -92.71 -0.64 15.72 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.39 7.61 -2.39 -0.02 1.37 16 33 H 0.41 10.91 6.31 -92.71 -0.58 10.33 16 34 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 35 H 0.08 1.63 7.74 -2.39 -0.02 1.61 16 36 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.83 6.71 -2.39 -0.02 0.82 16 38 H 0.40 5.47 8.91 -92.71 -0.83 4.65 16 39 H 0.11 1.66 8.13 -2.39 -0.02 1.64 16 40 H 0.12 1.33 6.79 -2.38 -0.02 1.31 16 41 H 0.09 1.49 6.97 -2.39 -0.02 1.47 16 42 H 0.06 1.21 7.86 -2.39 -0.02 1.19 16 43 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.08 1.95 7.22 -2.39 -0.02 1.93 16 45 H 0.04 1.25 7.20 -2.38 -0.02 1.23 16 46 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.04 1.43 7.75 -2.39 -0.02 1.41 16 48 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 49 H 0.06 2.14 7.06 -2.39 -0.02 2.12 16 50 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -69.13 384.74 -1.26 -70.38 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: -1.07 Total: 39.67 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 5.06 Total: 17.10 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -5.57 Total: -117.22 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -1.71 Total: -55.26 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -69.13 -1.26 -70.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733471689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.932 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds