Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 115.55054 * 2 1 4 4 C 1.50696 * 109.46862 * 294.33147 * 3 2 1 5 5 O 1.21278 * 120.00723 * 358.11725 * 4 3 2 6 6 N 1.34780 * 119.99826 * 178.11229 * 4 3 2 7 7 C 1.47160 * 120.97984 * 0.02562 * 6 4 3 8 8 C 1.53298 * 108.38327 * 129.48310 * 7 6 4 9 9 O 1.42965 * 109.22048 * 52.30218 * 8 7 6 10 10 C 1.42960 * 114.16691 * 297.41839 * 9 8 7 11 11 H 1.09004 * 109.51139 * 302.60454 * 10 9 8 12 12 C 1.53001 * 109.50960 * 182.50707 * 10 9 8 13 13 N 1.46898 * 109.47175 * 65.00047 * 12 10 9 14 14 C 1.46906 * 110.99764 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47059 * 179.97438 * 14 13 12 16 16 O 1.21293 * 119.99885 * 0.02562 * 15 14 13 17 17 N 1.34769 * 119.99871 * 180.02562 * 15 14 13 18 18 C 1.37104 * 119.99761 * 180.02562 * 17 15 14 19 19 H 1.07994 * 119.99803 * 0.02562 * 18 17 15 20 20 C 1.38958 * 119.99756 * 179.72477 * 18 17 15 21 21 N 1.31414 * 120.00151 * 0.27592 * 20 18 17 22 22 Si 1.86796 * 119.99709 * 180.27680 * 20 18 17 23 23 H 1.48496 * 109.47246 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47233 * 120.00155 * 22 20 18 25 25 H 1.48501 * 109.46944 * 240.00104 * 22 20 18 26 26 C 1.47146 * 120.98494 * 180.02562 * 6 4 3 27 27 C 1.52999 * 117.49928 * 145.67110 * 2 1 3 28 28 C 1.52998 * 117.49796 * 214.33362 * 2 1 3 29 29 H 1.08998 * 109.47249 * 63.58505 * 1 2 3 30 30 H 1.09000 * 109.47200 * 183.58847 * 1 2 3 31 31 H 1.09001 * 109.46724 * 303.58616 * 1 2 3 32 32 H 1.08997 * 109.46875 * 174.33120 * 3 2 1 33 33 H 1.09001 * 109.46593 * 54.33440 * 3 2 1 34 34 H 1.08996 * 109.68220 * 9.76282 * 7 6 4 35 35 H 1.08995 * 109.68200 * 249.20572 * 7 6 4 36 36 H 1.09005 * 109.51291 * 292.38026 * 8 7 6 37 37 H 1.09000 * 109.51124 * 172.22332 * 8 7 6 38 38 H 1.09003 * 109.47254 * 304.99686 * 12 10 9 39 39 H 1.09009 * 109.47287 * 185.00131 * 12 10 9 40 40 H 1.00893 * 111.00318 * 303.94954 * 13 12 10 41 41 H 1.09001 * 109.47281 * 59.99964 * 14 13 12 42 42 H 1.09000 * 109.47524 * 300.00185 * 14 13 12 43 43 H 0.96998 * 120.00308 * 359.97438 * 17 15 14 44 44 H 0.96995 * 119.99860 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.68450 * 110.79456 * 26 6 4 46 46 H 1.08997 * 109.68278 * 350.23832 * 26 6 4 47 47 H 1.08998 * 117.50186 * 214.99778 * 27 2 1 48 48 H 1.09004 * 117.49953 * 0.02562 * 27 2 1 49 49 H 1.08999 * 117.50299 * 359.97261 * 28 2 1 50 50 H 1.09003 * 117.50093 * 145.00094 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.8784 2.0860 -1.2946 5 8 1.2245 1.5258 -2.1486 6 7 2.3264 3.3399 -1.5034 7 6 3.1220 4.0399 -0.4822 8 6 4.3837 4.5977 -1.1508 9 8 4.0089 5.3632 -2.2986 10 6 3.3489 4.6069 -3.3165 11 1 3.9898 3.7834 -3.6315 12 6 3.0531 5.5115 -4.5145 13 7 4.3173 5.9540 -5.1178 14 6 4.0718 6.8261 -6.2743 15 6 5.3887 7.2595 -6.8651 16 8 6.4294 6.8789 -6.3716 17 7 5.4101 8.0699 -7.9417 18 6 6.6082 8.4637 -8.4795 19 1 7.5347 8.1242 -8.0406 20 6 6.6302 9.2947 -9.5930 21 7 5.5028 9.7074 -10.1273 22 14 8.2625 9.8250 -10.3303 23 1 9.3757 9.2289 -9.5490 24 1 8.3428 9.3627 -11.7393 25 1 8.3667 11.3058 -10.2886 26 6 2.0346 4.0494 -2.7590 27 6 2.2365 -1.1207 0.7653 28 6 2.2364 -1.1207 -0.7654 29 1 -0.3633 0.4572 -0.9203 30 1 -0.3633 -1.0256 0.0643 31 1 -0.3633 0.5685 0.8561 32 1 3.2692 1.2671 0.1015 33 1 1.8060 1.9666 0.8349 34 1 3.4026 3.3420 0.3066 35 1 2.5386 4.8576 -0.0592 36 1 5.0280 3.7736 -1.4574 37 1 4.9174 5.2355 -0.4462 38 1 2.4853 6.3806 -4.1822 39 1 2.4722 4.9585 -5.2527 40 1 4.9022 6.4133 -4.4360 41 1 3.5109 7.7043 -5.9546 42 1 3.4982 6.2819 -7.0245 43 1 4.5780 8.3739 -8.3365 44 1 5.5182 10.2878 -10.9043 45 1 1.3415 4.8682 -2.5656 46 1 1.5951 3.3578 -3.4778 47 1 3.1714 -0.8747 1.2688 48 1 1.6112 -1.8583 1.2685 49 1 1.6113 -1.8583 -1.2687 50 1 3.1714 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733739945.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = -112.732516 kcal Electronic energy + Delta-G solvation = -29214.585758 eV Core-core repulsion = 25048.620618 eV Total energy + Delta-G solvation = -4165.965140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53470 -40.21949 -39.81764 -38.34363 -36.85818 -35.91247 -35.65089 -33.34986 -33.02052 -30.84969 -29.67840 -29.21633 -28.07566 -26.52170 -24.96172 -24.03088 -23.28340 -22.37002 -21.11444 -20.82643 -19.91717 -19.52330 -18.31500 -17.88731 -17.78078 -17.10331 -16.91676 -16.74649 -16.37296 -16.16422 -16.02710 -15.86851 -15.63764 -15.23061 -15.12794 -14.85441 -14.60643 -14.40294 -14.29393 -13.78393 -13.56987 -13.35610 -13.19337 -13.13824 -13.07012 -12.89264 -12.81262 -12.61697 -12.40760 -12.35288 -12.24964 -12.11328 -12.09813 -11.72920 -11.51972 -11.28617 -11.15092 -10.90268 -10.41377 -10.35220 -10.02048 -9.60496 -9.35914 -8.47122 -5.96010 1.36662 1.41828 1.56308 1.59787 1.79984 2.04328 2.29173 2.70272 2.84889 2.89419 3.20012 3.45870 3.58046 3.67938 3.81504 3.86138 3.91425 3.97354 4.04254 4.08327 4.17140 4.25124 4.30834 4.35217 4.45325 4.50127 4.54781 4.55775 4.63628 4.65004 4.66964 4.79981 4.80533 4.84740 4.93748 4.97626 5.00706 5.05929 5.16283 5.26942 5.30613 5.40805 5.42251 5.85505 6.07144 6.16174 6.31618 6.37494 6.59670 7.12102 7.13788 7.55402 8.10896 8.70517 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028396 B = 0.001663 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.815056 B =16828.070691 C =16923.747606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.123 4.123 3 C -0.097 4.097 4 C 0.511 3.489 5 O -0.570 6.570 6 N -0.620 5.620 7 C 0.074 3.926 8 C 0.041 3.959 9 O -0.393 6.393 10 C 0.091 3.909 11 H 0.053 0.947 12 C 0.071 3.929 13 N -0.682 5.682 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.572 5.572 18 C -0.335 4.335 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.270 1.270 26 C 0.091 3.909 27 C -0.153 4.153 28 C -0.185 4.185 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.129 0.871 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.348 0.652 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.111 0.889 48 H 0.103 0.897 49 H 0.084 0.916 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.495 -15.314 25.824 32.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.123 4.123 3 C -0.136 4.136 4 C 0.302 3.698 5 O -0.449 6.449 6 N -0.354 5.354 7 C -0.048 4.048 8 C -0.036 4.036 9 O -0.312 6.312 10 C 0.032 3.968 11 H 0.071 0.929 12 C -0.058 4.058 13 N -0.315 5.315 14 C -0.068 4.068 15 C 0.225 3.775 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.033 4.033 27 C -0.189 4.189 28 C -0.222 4.222 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.147 0.853 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.167 0.833 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.129 0.871 48 H 0.122 0.878 49 H 0.103 0.897 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.093 -16.114 25.145 31.859 hybrid contribution 0.047 1.058 -0.706 1.272 sum -11.046 -15.056 24.439 30.757 Atomic orbital electron populations 1.21297 0.92179 1.01913 1.01679 1.21154 0.95015 0.89917 1.06209 1.21300 1.03172 0.94537 0.94633 1.21306 0.78245 0.80409 0.89887 1.90678 1.40800 1.65915 1.47509 1.48310 1.54246 1.14842 1.18029 1.22695 0.92476 0.98768 0.90872 1.23204 0.95734 0.96855 0.87842 1.87958 1.77692 1.36746 1.28774 1.22330 0.92822 0.93905 0.87721 0.92887 1.21989 0.90997 0.98513 0.94342 1.60050 1.16326 1.44549 1.10563 1.21551 0.93515 0.96803 0.94914 1.20871 0.91870 0.82084 0.82707 1.90489 1.36260 1.60241 1.64071 1.41927 1.08929 1.43305 1.26811 1.19720 0.86820 1.28404 1.11518 0.90367 1.26057 1.02282 0.96400 0.96534 1.69679 1.27477 1.35202 1.23715 0.84850 0.77213 0.78170 0.77956 1.19854 1.19600 1.19470 1.22081 0.96742 0.97268 0.87193 1.23208 1.02604 0.99786 0.93342 1.22958 1.02096 1.01763 0.95347 0.93510 0.92341 0.91361 0.86813 0.85833 0.85600 0.89048 0.93112 0.85349 0.93056 0.88331 0.83323 0.91395 0.87549 0.76912 0.91273 0.89649 0.89280 0.87102 0.87836 0.89711 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 9.45 71.98 0.68 -1.00 16 2 C -0.12 -1.65 1.60 -52.18 -0.08 -1.73 16 3 C -0.10 -1.03 3.95 29.85 0.12 -0.91 16 4 C 0.51 9.53 7.57 87.66 0.66 10.19 16 5 O -0.57 -15.45 13.94 -3.02 -0.04 -15.49 16 6 N -0.62 -10.23 3.02 -817.42 -2.47 -12.70 16 7 C 0.07 0.72 6.53 86.35 0.56 1.28 16 8 C 0.04 0.57 6.99 72.08 0.50 1.08 16 9 O -0.39 -8.82 9.91 -148.98 -1.48 -10.30 16 10 C 0.09 2.07 3.02 30.68 0.09 2.16 16 11 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 12 C 0.07 1.73 5.39 86.30 0.47 2.19 16 13 N -0.68 -22.87 6.13 -517.90 -3.17 -26.05 16 14 C 0.06 2.29 6.17 85.56 0.53 2.81 16 15 C 0.44 21.47 7.82 87.66 0.69 22.15 16 16 O -0.62 -35.78 15.78 -3.07 -0.05 -35.82 16 17 N -0.57 -30.02 5.29 -306.98 -1.62 -31.64 16 18 C -0.34 -19.40 9.68 84.04 0.81 -18.59 16 19 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 21 N -0.92 -50.10 13.05 21.67 0.28 -49.82 16 22 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 C 0.09 1.77 5.92 86.34 0.51 2.28 16 27 C -0.15 -1.49 9.92 30.62 0.30 -1.18 16 28 C -0.18 -2.83 9.92 30.62 0.30 -2.53 16 29 H 0.05 0.96 6.62 -2.39 -0.02 0.94 16 30 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 0.78 7.69 -2.39 -0.02 0.76 16 33 H 0.12 0.67 7.93 -2.39 -0.02 0.65 16 34 H 0.13 0.40 6.07 -2.39 -0.01 0.38 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 39 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.35 12.72 7.99 -89.70 -0.72 12.00 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 44 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.09 2.00 7.08 -2.39 -0.02 1.98 16 47 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 49 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -76.64 406.24 -0.40 -77.04 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -0.50 Total: 41.34 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 6.62 Total: 17.97 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -6.98 Total: -120.21 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -1.57 Total: -61.61 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -76.64 -0.40 -77.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733739945.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.690 kcal (2) G-P(sol) polarization free energy of solvation -76.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds