Wall clock time and date at job start Sat Apr 11 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 115.56194 * 2 1 4 4 C 1.50697 * 109.46780 * 279.18286 * 3 2 1 5 5 O 1.21278 * 120.00572 * 5.43384 * 4 3 2 6 6 N 1.34782 * 119.99738 * 185.43506 * 4 3 2 7 7 C 1.47153 * 120.97949 * 359.71746 * 6 4 3 8 8 C 1.52881 * 108.60541 * 230.50182 * 7 6 4 9 9 O 1.42964 * 109.30096 * 307.93453 * 8 7 6 10 10 C 1.42967 * 114.16261 * 62.45025 * 9 8 7 11 11 H 1.08998 * 109.51197 * 57.34569 * 10 9 8 12 12 C 1.53001 * 109.55390 * 177.47339 * 10 9 8 13 13 N 1.46903 * 109.46930 * 299.77098 * 12 10 9 14 14 C 1.46898 * 111.00107 * 179.97438 * 13 12 10 15 15 C 1.50697 * 109.47339 * 179.97438 * 14 13 12 16 16 O 1.21298 * 119.99992 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99963 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99735 * 179.97438 * 17 15 14 19 19 H 1.08007 * 120.00283 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99885 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99892 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00041 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47296 * 89.99698 * 22 20 18 24 24 H 1.48502 * 109.47024 * 210.00096 * 22 20 18 25 25 H 1.48508 * 109.46959 * 330.00009 * 22 20 18 26 26 C 1.47149 * 120.98535 * 179.97438 * 6 4 3 27 27 C 1.52998 * 117.49903 * 214.30924 * 2 1 3 28 28 C 1.52999 * 60.00033 * 252.51154 * 27 2 1 29 29 H 1.08999 * 109.47749 * 203.75857 * 1 2 3 30 30 H 1.09007 * 109.47064 * 323.76021 * 1 2 3 31 31 H 1.09002 * 109.47276 * 83.75066 * 1 2 3 32 32 H 1.08996 * 109.46707 * 39.18533 * 3 2 1 33 33 H 1.09001 * 109.46681 * 159.18529 * 3 2 1 34 34 H 1.09005 * 109.68570 * 350.28099 * 7 6 4 35 35 H 1.08992 * 109.68109 * 110.83701 * 7 6 4 36 36 H 1.09005 * 109.58300 * 187.92435 * 8 7 6 37 37 H 1.09005 * 109.36802 * 67.81895 * 8 7 6 38 38 H 1.08997 * 109.46910 * 59.76843 * 12 10 9 39 39 H 1.08993 * 109.47299 * 179.77053 * 12 10 9 40 40 H 1.00907 * 111.00057 * 56.04192 * 13 12 10 41 41 H 1.09002 * 109.46621 * 300.00184 * 14 13 12 42 42 H 1.09000 * 109.47151 * 59.99888 * 14 13 12 43 43 H 0.96998 * 120.00346 * 0.02562 * 17 15 14 44 44 H 0.97000 * 119.99516 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.68589 * 249.16958 * 26 6 4 46 46 H 1.09008 * 109.67911 * 9.68296 * 26 6 4 47 47 H 1.09002 * 117.49897 * 145.02039 * 27 2 1 48 48 H 1.09003 * 117.49379 * 0.02562 * 27 2 1 49 49 H 1.09007 * 117.49838 * 107.48656 * 28 27 2 50 50 H 1.08996 * 117.49826 * 252.48450 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2024 1.9312 -1.4026 5 8 1.6432 1.3300 -2.2952 6 7 2.8347 3.0921 -1.6651 7 6 3.5148 3.8425 -0.5975 8 6 3.0444 5.2963 -0.6472 9 8 3.2019 5.7987 -1.9764 10 6 2.4171 5.1157 -2.9570 11 1 1.3642 5.1651 -2.6794 12 6 2.6169 5.7754 -4.3229 13 7 2.1921 7.1800 -4.2552 14 6 2.3706 7.8472 -5.5517 15 6 1.9246 9.2826 -5.4437 16 8 1.5003 9.7082 -4.3901 17 7 1.9983 10.0937 -6.5175 18 6 1.5921 11.3995 -6.4194 19 1 1.2134 11.7782 -5.4814 20 6 1.6675 12.2356 -7.5266 21 7 1.2786 13.4874 -7.4324 22 14 2.3216 11.5804 -9.1490 23 1 1.1982 11.0318 -9.9504 24 1 2.9742 12.6823 -9.9008 25 1 3.3126 10.5061 -8.8855 26 6 2.8607 3.6496 -3.0267 27 6 2.2364 -1.1210 -0.7650 28 6 2.2364 -1.1210 0.7650 29 1 -0.3634 -0.9405 0.4140 30 1 -0.3633 0.8289 0.6076 31 1 -0.3634 0.1119 -1.0216 32 1 1.6284 2.0517 0.6493 33 1 3.2135 1.2935 0.3652 34 1 3.2653 3.4100 0.3715 35 1 4.5932 3.8031 -0.7508 36 1 3.6390 5.8964 0.0416 37 1 1.9937 5.3462 -0.3612 38 1 3.6702 5.7273 -4.5990 39 1 2.0212 5.2513 -5.0702 40 1 2.6847 7.6720 -3.5248 41 1 3.4224 7.8134 -5.8358 42 1 1.7734 7.3375 -6.3078 43 1 2.3380 9.7535 -7.3600 44 1 1.3309 14.0709 -8.2054 45 1 3.8722 3.5905 -3.4284 46 1 2.1785 3.0890 -3.6659 47 1 3.1715 -0.8752 -1.2683 48 1 1.6111 -1.8582 -1.2686 49 1 1.6111 -1.8585 1.2683 50 1 3.1716 -0.8756 1.2683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733739946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:50 Heat of formation + Delta-G solvation = -79.523786 kcal Electronic energy + Delta-G solvation = -29264.513988 eV Core-core repulsion = 25099.988887 eV Total energy + Delta-G solvation = -4164.525101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84761 -39.24177 -38.39736 -37.69011 -35.71821 -34.89573 -33.88852 -32.26325 -31.61309 -30.27514 -28.90861 -28.54300 -26.97652 -25.02649 -23.75941 -23.02852 -22.78527 -21.49441 -20.22962 -19.35369 -18.93662 -18.33125 -17.59117 -16.95844 -16.52283 -16.30614 -15.96538 -15.53566 -15.43974 -15.26396 -14.89876 -14.79160 -14.57785 -14.09977 -14.03292 -13.75690 -13.50938 -13.20720 -13.13121 -12.91756 -12.74077 -12.62071 -12.40597 -12.21660 -11.92696 -11.88854 -11.83235 -11.68522 -11.56512 -11.44912 -11.13681 -10.95814 -10.66692 -10.57436 -10.39640 -10.27434 -9.95279 -9.84330 -9.54592 -8.90429 -8.55377 -8.16722 -8.10808 -6.28698 -3.79941 2.28136 2.43219 3.04441 3.08953 3.16773 3.36017 3.43999 3.77538 3.99847 4.12509 4.15435 4.18503 4.34494 4.43518 4.50716 4.58405 4.63942 4.71586 4.79821 4.85480 4.95596 4.98643 5.04529 5.13242 5.23885 5.25551 5.27516 5.27890 5.37374 5.45433 5.45952 5.52848 5.58999 5.59724 5.65062 5.68635 5.77356 5.78308 5.84170 5.92927 5.96730 5.99926 6.88709 6.95481 7.10708 7.60693 7.65908 7.81651 8.17308 8.62745 8.97708 9.45202 9.86025 10.84501 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029764 B = 0.001720 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.521749 B =16277.387489 C =16579.256606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.113 4.113 3 C -0.103 4.103 4 C 0.517 3.483 5 O -0.527 6.527 6 N -0.619 5.619 7 C 0.071 3.929 8 C 0.049 3.951 9 O -0.371 6.371 10 C 0.082 3.918 11 H 0.075 0.925 12 C 0.070 3.930 13 N -0.666 5.666 14 C 0.047 3.953 15 C 0.451 3.549 16 O -0.563 6.563 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.085 3.915 27 C -0.156 4.156 28 C -0.177 4.177 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.037 0.963 39 H 0.087 0.913 40 H 0.360 0.640 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.445 -29.085 14.955 33.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.305 3.695 5 O -0.402 6.402 6 N -0.354 5.354 7 C -0.052 4.052 8 C -0.029 4.029 9 O -0.289 6.289 10 C 0.023 3.977 11 H 0.093 0.907 12 C -0.060 4.060 13 N -0.299 5.299 14 C -0.085 4.085 15 C 0.237 3.763 16 O -0.445 6.445 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.038 4.038 27 C -0.194 4.194 28 C -0.214 4.214 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.180 0.820 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.203 0.797 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.121 0.879 47 H 0.108 0.892 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.273 -28.896 14.935 32.952 hybrid contribution 1.458 -0.351 -1.315 1.995 sum 6.731 -29.247 13.620 32.958 Atomic orbital electron populations 1.21322 0.91513 1.01554 1.02621 1.21060 0.95156 0.89233 1.05878 1.21282 1.02454 0.96168 0.94391 1.20672 0.77676 0.79907 0.91202 1.90703 1.43758 1.58212 1.47544 1.48174 1.54858 1.22806 1.09564 1.22430 0.98067 0.93407 0.91318 1.22862 1.01630 0.93004 0.85357 1.87987 1.66967 1.57949 1.16005 1.22555 0.95736 0.89780 0.89653 0.90724 1.21902 0.99070 0.90820 0.94244 1.60045 1.62759 1.00962 1.06148 1.21713 0.99485 0.94713 0.92632 1.19702 0.84814 0.86757 0.85068 1.90569 1.49355 1.76059 1.28513 1.42202 1.58795 1.11420 1.10697 1.19440 1.39504 0.83761 1.00619 0.86291 1.25037 0.97702 0.95347 0.98102 1.69627 1.46711 1.04851 1.31039 0.86665 0.79459 0.79064 0.84144 1.19614 1.20220 1.19529 1.22278 1.03186 0.94425 0.83957 1.22873 1.02180 1.00842 0.93455 1.23225 1.02178 1.00946 0.95048 0.92505 0.92436 0.91420 0.88245 0.88964 0.88823 0.90357 0.87386 0.92406 0.94479 0.89472 0.81990 0.93693 0.89472 0.79694 0.91654 0.90709 0.87896 0.89222 0.88712 0.88628 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.70 37.16 0.36 -0.47 16 2 C -0.11 -0.81 1.59 -154.51 -0.25 -1.06 16 3 C -0.10 -0.66 4.02 -27.88 -0.11 -0.77 16 4 C 0.52 4.93 7.57 -10.98 -0.08 4.85 16 5 O -0.53 -6.84 14.69 5.56 0.08 -6.76 16 6 N -0.62 -5.35 3.02 -172.50 -0.52 -5.88 16 7 C 0.07 0.43 6.47 -3.75 -0.02 0.40 16 8 C 0.05 0.38 6.97 37.10 0.26 0.64 16 9 O -0.37 -4.20 9.74 -35.23 -0.34 -4.54 16 10 C 0.08 0.90 3.05 -26.56 -0.08 0.81 16 11 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 12 C 0.07 0.83 5.42 -3.82 -0.02 0.81 16 13 N -0.67 -10.70 6.13 -115.06 -0.70 -11.41 16 14 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 15 C 0.45 10.45 7.82 -10.99 -0.09 10.36 16 16 O -0.56 -15.45 15.78 5.54 0.09 -15.37 16 17 N -0.59 -14.30 5.09 -10.96 -0.06 -14.35 16 18 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 19 H 0.12 3.89 7.39 -52.48 -0.39 3.51 16 20 C 0.04 1.13 5.50 -17.46 -0.10 1.04 16 21 N -0.88 -25.98 13.96 55.50 0.77 -25.21 16 22 Si 0.88 19.54 27.74 -169.99 -4.71 14.82 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.27 -5.45 6.52 56.52 0.37 -5.09 16 26 C 0.08 0.81 5.93 -3.51 -0.02 0.79 16 27 C -0.16 -1.19 9.16 -26.73 -0.24 -1.43 16 28 C -0.18 -1.02 9.82 -26.73 -0.26 -1.28 16 29 H 0.06 0.35 7.91 -51.93 -0.41 -0.06 16 30 H 0.06 0.38 8.01 -51.92 -0.42 -0.04 16 31 H 0.07 0.62 7.96 -51.93 -0.41 0.21 16 32 H 0.10 0.49 7.77 -51.93 -0.40 0.09 16 33 H 0.09 0.42 7.56 -51.93 -0.39 0.03 16 34 H 0.09 0.32 6.09 -51.93 -0.32 0.01 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.36 6.26 7.83 -39.29 -0.31 5.95 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 1.08 7.08 -51.92 -0.37 0.71 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.10 0.49 8.06 -51.93 -0.42 0.07 16 50 H 0.09 0.43 8.08 -51.93 -0.42 0.01 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -35.51 403.59 -8.46 -43.97 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -8.31 Total: 12.06 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -0.84 Total: 6.58 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.51 Total: -56.85 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.17 Total: -26.67 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.51 -8.46 -43.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733739946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.557 kcal (2) G-P(sol) polarization free energy of solvation -35.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds