Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 115.56194 * 2 1 4 4 C 1.50697 * 109.46780 * 279.18286 * 3 2 1 5 5 O 1.21278 * 120.00572 * 5.43384 * 4 3 2 6 6 N 1.34782 * 119.99738 * 185.43506 * 4 3 2 7 7 C 1.47153 * 120.97949 * 359.71746 * 6 4 3 8 8 C 1.52881 * 108.60541 * 230.50182 * 7 6 4 9 9 O 1.42964 * 109.30096 * 307.93453 * 8 7 6 10 10 C 1.42967 * 114.16261 * 62.45025 * 9 8 7 11 11 H 1.08998 * 109.51197 * 57.34569 * 10 9 8 12 12 C 1.53001 * 109.55390 * 177.47339 * 10 9 8 13 13 N 1.46903 * 109.46930 * 299.77098 * 12 10 9 14 14 C 1.46898 * 111.00107 * 179.97438 * 13 12 10 15 15 C 1.50697 * 109.47339 * 179.97438 * 14 13 12 16 16 O 1.21298 * 119.99992 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99963 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99735 * 179.97438 * 17 15 14 19 19 H 1.08007 * 120.00283 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99885 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99892 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00041 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47296 * 89.99698 * 22 20 18 24 24 H 1.48502 * 109.47024 * 210.00096 * 22 20 18 25 25 H 1.48508 * 109.46959 * 330.00009 * 22 20 18 26 26 C 1.47149 * 120.98535 * 179.97438 * 6 4 3 27 27 C 1.52998 * 117.49903 * 214.30924 * 2 1 3 28 28 C 1.52999 * 60.00033 * 252.51154 * 27 2 1 29 29 H 1.08999 * 109.47749 * 203.75857 * 1 2 3 30 30 H 1.09007 * 109.47064 * 323.76021 * 1 2 3 31 31 H 1.09002 * 109.47276 * 83.75066 * 1 2 3 32 32 H 1.08996 * 109.46707 * 39.18533 * 3 2 1 33 33 H 1.09001 * 109.46681 * 159.18529 * 3 2 1 34 34 H 1.09005 * 109.68570 * 350.28099 * 7 6 4 35 35 H 1.08992 * 109.68109 * 110.83701 * 7 6 4 36 36 H 1.09005 * 109.58300 * 187.92435 * 8 7 6 37 37 H 1.09005 * 109.36802 * 67.81895 * 8 7 6 38 38 H 1.08997 * 109.46910 * 59.76843 * 12 10 9 39 39 H 1.08993 * 109.47299 * 179.77053 * 12 10 9 40 40 H 1.00907 * 111.00057 * 56.04192 * 13 12 10 41 41 H 1.09002 * 109.46621 * 300.00184 * 14 13 12 42 42 H 1.09000 * 109.47151 * 59.99888 * 14 13 12 43 43 H 0.96998 * 120.00346 * 0.02562 * 17 15 14 44 44 H 0.97000 * 119.99516 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.68589 * 249.16958 * 26 6 4 46 46 H 1.09008 * 109.67911 * 9.68296 * 26 6 4 47 47 H 1.09002 * 117.49897 * 145.02039 * 27 2 1 48 48 H 1.09003 * 117.49379 * 0.02562 * 27 2 1 49 49 H 1.09007 * 117.49838 * 107.48656 * 28 27 2 50 50 H 1.08996 * 117.49826 * 252.48450 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2024 1.9312 -1.4026 5 8 1.6432 1.3300 -2.2952 6 7 2.8347 3.0921 -1.6651 7 6 3.5148 3.8425 -0.5975 8 6 3.0444 5.2963 -0.6472 9 8 3.2019 5.7987 -1.9764 10 6 2.4171 5.1157 -2.9570 11 1 1.3642 5.1651 -2.6794 12 6 2.6169 5.7754 -4.3229 13 7 2.1921 7.1800 -4.2552 14 6 2.3706 7.8472 -5.5517 15 6 1.9246 9.2826 -5.4437 16 8 1.5003 9.7082 -4.3901 17 7 1.9983 10.0937 -6.5175 18 6 1.5921 11.3995 -6.4194 19 1 1.2134 11.7782 -5.4814 20 6 1.6675 12.2356 -7.5266 21 7 1.2786 13.4874 -7.4324 22 14 2.3216 11.5804 -9.1490 23 1 1.1982 11.0318 -9.9504 24 1 2.9742 12.6823 -9.9008 25 1 3.3126 10.5061 -8.8855 26 6 2.8607 3.6496 -3.0267 27 6 2.2364 -1.1210 -0.7650 28 6 2.2364 -1.1210 0.7650 29 1 -0.3634 -0.9405 0.4140 30 1 -0.3633 0.8289 0.6076 31 1 -0.3634 0.1119 -1.0216 32 1 1.6284 2.0517 0.6493 33 1 3.2135 1.2935 0.3652 34 1 3.2653 3.4100 0.3715 35 1 4.5932 3.8031 -0.7508 36 1 3.6390 5.8964 0.0416 37 1 1.9937 5.3462 -0.3612 38 1 3.6702 5.7273 -4.5990 39 1 2.0212 5.2513 -5.0702 40 1 2.6847 7.6720 -3.5248 41 1 3.4224 7.8134 -5.8358 42 1 1.7734 7.3375 -6.3078 43 1 2.3380 9.7535 -7.3600 44 1 1.3309 14.0709 -8.2054 45 1 3.8722 3.5905 -3.4284 46 1 2.1785 3.0890 -3.6659 47 1 3.1715 -0.8752 -1.2683 48 1 1.6111 -1.8582 -1.2686 49 1 1.6111 -1.8585 1.2683 50 1 3.1716 -0.8756 1.2683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733739946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -107.282215 kcal Electronic energy + Delta-G solvation = -29265.717684 eV Core-core repulsion = 25099.988887 eV Total energy + Delta-G solvation = -4165.728797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53845 -40.33621 -39.84814 -38.33055 -36.87178 -35.94254 -35.65080 -33.76328 -33.10276 -30.86161 -29.73655 -29.26972 -28.15218 -26.42753 -24.85240 -24.01539 -23.29297 -22.34947 -21.29580 -20.84449 -20.27286 -19.52019 -18.29743 -17.86214 -17.75988 -17.14386 -17.02316 -16.72238 -16.50767 -16.25407 -15.90007 -15.85798 -15.42112 -15.20929 -15.02564 -14.91690 -14.61174 -14.49722 -14.32659 -14.13923 -13.78193 -13.40010 -13.30230 -13.21927 -13.10799 -12.89734 -12.79595 -12.57780 -12.41193 -12.35844 -12.23873 -12.07681 -11.97479 -11.72506 -11.51561 -11.24718 -11.14070 -10.89013 -10.47354 -10.42716 -10.24874 -9.60562 -9.34532 -8.41257 -6.02328 1.30641 1.36293 1.45055 1.59739 1.79813 1.95389 2.23410 2.70336 2.71345 2.85742 3.14919 3.34312 3.60213 3.67457 3.81987 3.84140 3.92424 3.97628 4.04300 4.09089 4.14357 4.17627 4.25336 4.34341 4.42188 4.47192 4.53865 4.54989 4.65019 4.67318 4.67466 4.80008 4.81150 4.85621 4.94935 4.97269 4.97986 5.06139 5.13788 5.27296 5.31495 5.37998 5.52416 5.88724 6.01425 6.16701 6.31092 6.37490 6.59879 6.87852 7.13461 7.39489 7.96318 8.76411 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029764 B = 0.001720 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.521749 B =16277.387489 C =16579.256606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.125 4.125 3 C -0.099 4.099 4 C 0.511 3.489 5 O -0.570 6.570 6 N -0.620 5.620 7 C 0.074 3.926 8 C 0.041 3.959 9 O -0.392 6.392 10 C 0.090 3.910 11 H 0.053 0.947 12 C 0.072 3.928 13 N -0.686 5.686 14 C 0.061 3.939 15 C 0.448 3.552 16 O -0.615 6.615 17 N -0.590 5.590 18 C -0.331 4.331 19 H 0.054 0.946 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.231 1.231 26 C 0.091 3.909 27 C -0.175 4.175 28 C -0.154 4.154 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.349 0.651 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.103 0.897 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.718 -31.751 14.611 36.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.126 4.126 3 C -0.138 4.138 4 C 0.301 3.699 5 O -0.448 6.448 6 N -0.355 5.355 7 C -0.048 4.048 8 C -0.036 4.036 9 O -0.311 6.311 10 C 0.031 3.969 11 H 0.071 0.929 12 C -0.057 4.057 13 N -0.319 5.319 14 C -0.071 4.071 15 C 0.236 3.764 16 O -0.499 6.499 17 N -0.232 5.232 18 C -0.460 4.460 19 H 0.072 0.928 20 C -0.213 4.213 21 N -0.575 5.575 22 Si 0.786 3.214 23 H -0.182 1.182 24 H -0.200 1.200 25 H -0.154 1.154 26 C -0.033 4.033 27 C -0.212 4.212 28 C -0.190 4.190 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.108 0.892 36 H 0.145 0.855 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.168 0.832 41 H 0.096 0.904 42 H 0.135 0.865 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.122 0.878 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.566 -31.588 14.613 35.617 hybrid contribution 0.687 0.524 -1.058 1.366 sum 8.253 -31.063 13.555 34.883 Atomic orbital electron populations 1.21300 0.92140 1.02387 1.01111 1.21170 0.94939 0.89984 1.06502 1.21353 1.04231 0.95769 0.92423 1.21305 0.76752 0.79695 0.92130 1.90687 1.45588 1.59500 1.49069 1.48305 1.54638 1.22759 1.09765 1.22597 0.98369 0.91904 0.91933 1.23113 1.01815 0.94599 0.84072 1.87953 1.66924 1.58826 1.17428 1.22377 0.94584 0.90548 0.89435 0.92927 1.22000 1.00192 0.88305 0.95249 1.60035 1.63609 1.02767 1.05452 1.21649 1.01590 0.89942 0.93905 1.20993 0.82625 0.89077 0.83744 1.90545 1.51113 1.77722 1.30557 1.42017 1.59221 1.09881 1.12066 1.19021 1.41525 0.86426 0.99011 0.92758 1.26129 0.97135 0.95150 1.02930 1.69810 1.47835 1.06843 1.32978 0.85350 0.79754 0.79430 0.76880 1.18190 1.19956 1.15387 1.22115 1.03262 0.93163 0.84768 1.22837 1.01905 1.01421 0.95052 1.23290 1.02565 0.99692 0.93486 0.91630 0.91640 0.94100 0.86354 0.86363 0.85672 0.89165 0.85470 0.93129 0.92832 0.88069 0.83241 0.90409 0.86536 0.77409 0.91132 0.89681 0.89181 0.90023 0.89764 0.87835 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.70 71.98 0.70 -0.89 16 2 C -0.13 -1.61 1.59 -52.18 -0.08 -1.70 16 3 C -0.10 -1.00 4.02 29.85 0.12 -0.88 16 4 C 0.51 9.16 7.57 87.66 0.66 9.83 16 5 O -0.57 -14.97 14.69 -3.02 -0.04 -15.01 16 6 N -0.62 -9.74 3.02 -818.07 -2.47 -12.21 16 7 C 0.07 0.69 6.47 86.22 0.56 1.24 16 8 C 0.04 0.57 6.97 71.94 0.50 1.07 16 9 O -0.39 -8.49 9.74 -148.98 -1.45 -9.95 16 10 C 0.09 1.90 3.05 30.71 0.09 1.99 16 11 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 12 C 0.07 1.57 5.42 86.30 0.47 2.03 16 13 N -0.69 -21.30 6.13 -517.94 -3.17 -24.47 16 14 C 0.06 1.92 6.17 85.56 0.53 2.45 16 15 C 0.45 20.74 7.82 87.66 0.69 21.43 16 16 O -0.61 -35.13 15.78 -3.09 -0.05 -35.18 16 17 N -0.59 -28.30 5.09 -306.97 -1.56 -29.86 16 18 C -0.33 -19.68 10.16 84.04 0.85 -18.83 16 19 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 20 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 21 N -0.93 -56.82 13.96 21.66 0.30 -56.51 16 22 Si 0.97 39.07 27.74 68.60 1.90 40.97 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 26 C 0.09 1.64 5.93 86.37 0.51 2.15 16 27 C -0.17 -2.54 9.16 30.59 0.28 -2.26 16 28 C -0.15 -1.39 9.82 30.59 0.30 -1.09 16 29 H 0.06 0.77 7.91 -2.39 -0.02 0.75 16 30 H 0.06 0.79 8.01 -2.38 -0.02 0.77 16 31 H 0.04 0.79 7.96 -2.39 -0.02 0.77 16 32 H 0.12 0.78 7.77 -2.39 -0.02 0.76 16 33 H 0.12 0.60 7.56 -2.39 -0.02 0.58 16 34 H 0.13 0.37 6.09 -2.38 -0.01 0.35 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.35 12.09 7.83 -89.69 -0.70 11.39 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.39 15.39 5.76 -92.71 -0.53 14.86 16 44 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.09 1.87 7.08 -2.38 -0.02 1.86 16 47 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.10 0.79 8.06 -2.38 -0.02 0.77 16 50 H 0.11 0.62 8.08 -2.39 -0.02 0.60 16 Total: -1.00 -84.70 403.59 -0.25 -84.95 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -0.34 Total: 41.10 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.65 Total: 16.17 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -6.91 Total: -123.06 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -1.54 Total: -60.13 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.90 Total: 40.97 kcal Total: -84.70 -0.25 -84.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733739946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.334 kcal (2) G-P(sol) polarization free energy of solvation -84.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds