Wall clock time and date at job start Sat Apr 11 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00313 * 2 1 4 4 H 1.48500 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47047 * 299.99864 * 3 2 1 6 6 H 1.48497 * 109.47019 * 59.99715 * 3 2 1 7 7 C 1.38947 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00242 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00427 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99856 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00191 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47213 * 180.02562 * 12 10 9 14 14 C 1.46894 * 111.00180 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47340 * 180.02562 * 14 13 12 16 16 C 1.53781 * 113.61609 * 175.00028 * 15 14 13 17 17 C 1.53781 * 87.08070 * 139.98229 * 16 15 14 18 18 N 1.46497 * 113.61305 * 219.93536 * 17 16 15 19 19 C 1.34780 * 119.99653 * 203.46742 * 18 17 16 20 20 O 1.21270 * 120.00163 * 0.02562 * 19 18 17 21 21 C 1.50711 * 119.99583 * 179.97438 * 19 18 17 22 22 C 1.53171 * 109.54694 * 299.55997 * 21 19 18 23 23 C 1.53089 * 109.16645 * 183.15604 * 22 21 19 24 24 O 1.42901 * 109.41524 * 57.60373 * 23 22 21 25 25 C 1.42895 * 114.09954 * 298.84540 * 24 23 22 26 26 C 1.53095 * 109.41791 * 61.16074 * 25 24 23 27 27 C 1.53786 * 87.17350 * 334.52830 * 17 16 15 28 28 H 0.97004 * 119.99929 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99730 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47179 * 60.00144 * 12 10 9 31 31 H 1.09002 * 109.47386 * 299.99856 * 12 10 9 32 32 H 1.00896 * 111.00173 * 303.95750 * 13 12 10 33 33 H 1.08997 * 109.47139 * 60.00006 * 14 13 12 34 34 H 1.09006 * 109.47367 * 300.00435 * 14 13 12 35 35 H 1.08996 * 112.84723 * 43.80848 * 15 14 13 36 36 H 1.08999 * 113.61181 * 25.43284 * 16 15 14 37 37 H 1.08998 * 113.61680 * 254.52836 * 16 15 14 38 38 H 1.09002 * 113.61445 * 89.11830 * 17 16 15 39 39 H 0.96995 * 120.00146 * 23.47603 * 18 17 16 40 40 H 1.09006 * 109.54236 * 59.83037 * 21 19 18 41 41 H 1.09008 * 109.52183 * 303.05984 * 22 21 19 42 42 H 1.09004 * 109.52374 * 63.24462 * 22 21 19 43 43 H 1.08999 * 109.47772 * 297.62404 * 23 22 21 44 44 H 1.08994 * 109.48326 * 177.59340 * 23 22 21 45 45 H 1.09003 * 109.48517 * 301.17743 * 25 24 23 46 46 H 1.09000 * 109.49081 * 181.14383 * 25 24 23 47 47 H 1.08997 * 109.52424 * 182.48782 * 26 25 24 48 48 H 1.08998 * 109.57508 * 62.32036 * 26 25 24 49 49 H 1.08992 * 113.61675 * 140.02412 * 27 17 16 50 50 H 1.09000 * 113.60973 * 270.92699 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2436 -4.8629 0.0011 13 7 2.1982 -5.9796 0.0016 14 6 1.4979 -7.2708 0.0028 15 6 2.5227 -8.4069 0.0039 16 6 1.8932 -9.8044 0.1280 17 6 2.9318 -10.2776 -0.9026 18 7 2.3948 -11.2212 -1.8861 19 6 3.2227 -12.0680 -2.5295 20 8 4.4122 -12.0492 -2.2939 21 6 2.6702 -13.0392 -3.5409 22 6 1.6611 -13.9691 -2.8603 23 6 1.1645 -15.0014 -3.8759 24 8 2.2788 -15.7270 -4.3993 25 6 3.2321 -14.9153 -5.0881 26 6 3.8119 -13.8796 -4.1211 27 6 2.9820 -8.8253 -1.4057 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6166 -4.9209 -0.8886 31 1 0.6173 -4.9205 0.8914 32 1 2.8331 -5.9129 -0.7797 33 1 0.8727 -7.3459 -0.8869 34 1 0.8732 -7.3446 0.8931 35 1 3.3444 -8.2349 0.6992 36 1 0.8659 -9.8541 -0.2329 37 1 2.0191 -10.2542 1.1129 38 1 3.8663 -10.6176 -0.4562 39 1 1.4434 -11.2365 -2.0744 40 1 2.1779 -12.4894 -4.3432 41 1 2.1420 -14.4806 -2.0265 42 1 0.8175 -13.3847 -2.4927 43 1 0.6482 -14.4917 -4.6894 44 1 0.4784 -15.6923 -3.3862 45 1 2.7429 -14.4044 -5.9174 46 1 4.0356 -15.5442 -5.4716 47 1 4.5064 -13.2313 -4.6553 48 1 4.3368 -14.3884 -3.3126 49 1 3.9862 -8.4851 -1.6582 50 1 2.2518 -8.6078 -2.1852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733941817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:05 Heat of formation + Delta-G solvation = -139.889241 kcal Electronic energy + Delta-G solvation = -28418.893696 eV Core-core repulsion = 24251.750953 eV Total energy + Delta-G solvation = -4167.142744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.53620 -40.36754 -40.01599 -39.13322 -36.54303 -35.78898 -34.95262 -34.05510 -33.26075 -32.01150 -29.81211 -27.58286 -26.78967 -26.62734 -25.16730 -24.47907 -23.13474 -21.91038 -21.23834 -21.04474 -20.32313 -19.88416 -18.30230 -18.02674 -17.38544 -17.02037 -16.94417 -16.70595 -16.53882 -16.34257 -16.00043 -15.85543 -15.67774 -15.22676 -15.15345 -14.89960 -14.67087 -14.39089 -14.22482 -13.70837 -13.58181 -13.44455 -13.37577 -13.29701 -13.02009 -12.77379 -12.69242 -12.50352 -12.41716 -12.31735 -12.12872 -12.04033 -11.71171 -11.55131 -11.52260 -11.45292 -11.22509 -10.91990 -10.43328 -10.34559 -10.02203 -10.01899 -9.29256 -8.47658 -5.96379 1.36135 1.41612 1.55765 1.56726 2.04691 2.16460 2.29077 2.94180 2.99029 3.19718 3.49053 3.53021 3.55254 3.69280 3.74411 3.77841 3.88466 3.93263 4.00991 4.24062 4.28506 4.33112 4.39193 4.50711 4.51654 4.55153 4.59974 4.65897 4.67723 4.77344 4.79114 4.80181 4.82553 4.89849 4.91335 5.05683 5.07496 5.10227 5.15413 5.24892 5.36391 5.40557 5.63419 5.90990 6.14199 6.27215 6.42763 6.55198 6.59788 7.12171 7.24297 7.55682 8.11449 8.69909 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.001420 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.821786 B =19713.439441 C =19777.567133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.626 6.626 12 C 0.066 3.934 13 N -0.687 5.687 14 C 0.075 3.925 15 C -0.104 4.104 16 C -0.116 4.116 17 C 0.121 3.879 18 N -0.703 5.703 19 C 0.514 3.486 20 O -0.588 6.588 21 C -0.105 4.105 22 C -0.141 4.141 23 C 0.057 3.943 24 O -0.407 6.407 25 C 0.063 3.937 26 C -0.136 4.136 27 C -0.149 4.149 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.341 0.659 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.417 0.583 40 H 0.123 0.877 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.051 0.949 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 -30.672 -8.231 32.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.067 4.067 13 N -0.319 5.319 14 C -0.054 4.054 15 C -0.123 4.123 16 C -0.154 4.154 17 C 0.016 3.984 18 N -0.354 5.354 19 C 0.301 3.699 20 O -0.468 6.468 21 C -0.126 4.126 22 C -0.179 4.179 23 C -0.019 4.019 24 O -0.326 6.326 25 C -0.014 4.014 26 C -0.174 4.174 27 C -0.188 4.188 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.160 0.840 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.255 0.745 40 H 0.141 0.859 41 H 0.079 0.921 42 H 0.125 0.875 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.088 0.912 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.362 -30.695 -7.351 31.863 hybrid contribution -0.311 1.473 -0.808 1.709 sum -4.673 -29.222 -8.159 30.697 Atomic orbital electron populations 1.69671 1.06770 1.29250 1.50315 1.26019 0.96552 1.02336 0.96216 0.84875 0.77969 0.77125 0.78383 1.19970 1.19489 1.19549 1.19707 0.92691 0.84141 1.49994 0.90487 1.41933 1.09340 1.04687 1.65049 1.20979 0.88280 0.86322 0.82131 1.90494 1.16040 1.88013 1.56683 1.21534 0.93998 0.88005 1.03123 1.60074 1.19249 1.01310 1.51311 1.22011 0.95204 0.86653 1.01493 1.22343 0.98828 0.93928 0.97244 1.23265 0.99263 0.93580 0.99316 1.22371 0.98551 0.87404 0.90098 1.45903 1.11686 1.36560 1.41294 1.21153 0.86166 0.80899 0.81658 1.90699 1.18093 1.71594 1.66412 1.21434 0.98159 0.95525 0.97513 1.22194 0.98934 0.97695 0.99042 1.22778 0.88052 0.94909 0.96191 1.87929 1.34879 1.35843 1.73960 1.22676 0.92266 0.93092 0.93323 1.21989 0.97373 0.98070 1.00014 1.23610 1.01678 0.95947 0.97578 0.91264 0.76900 0.91492 0.87684 0.84050 0.93648 0.89961 0.89623 0.87017 0.89818 0.89239 0.74527 0.85889 0.92124 0.87535 0.91009 0.87266 0.91195 0.88042 0.90830 0.92644 0.93058 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.36 13.05 21.66 0.28 -49.07 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 0.99 43.05 29.55 68.60 2.03 45.07 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.34 -19.24 9.68 84.04 0.81 -18.42 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -29.48 5.29 -306.99 -1.62 -31.11 16 10 C 0.44 20.86 7.82 87.66 0.69 21.55 16 11 O -0.63 -35.35 15.78 -3.07 -0.05 -35.40 16 12 C 0.07 2.21 6.17 85.56 0.53 2.73 16 13 N -0.69 -21.23 6.12 -517.94 -3.17 -24.41 16 14 C 0.07 1.53 5.52 86.30 0.48 2.00 16 15 C -0.10 -1.89 3.91 -10.18 -0.04 -1.93 16 16 C -0.12 -1.37 7.39 31.12 0.23 -1.14 16 17 C 0.12 1.96 4.21 45.52 0.19 2.15 16 18 N -0.70 -8.71 5.27 -440.03 -2.32 -11.02 16 19 C 0.51 9.04 7.16 87.66 0.63 9.67 16 20 O -0.59 -16.50 15.58 -3.00 -0.05 -16.55 16 21 C -0.11 -1.14 2.61 -11.42 -0.03 -1.17 16 22 C -0.14 -1.02 5.30 30.68 0.16 -0.86 16 23 C 0.06 0.40 6.84 72.01 0.49 0.89 16 24 O -0.41 -5.50 10.76 -148.98 -1.60 -7.11 16 25 C 0.06 0.67 6.84 72.01 0.49 1.16 16 26 C -0.14 -1.91 4.74 30.69 0.15 -1.77 16 27 C -0.15 -2.73 7.45 31.21 0.23 -2.50 16 28 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.11 3.14 8.14 -2.39 -0.02 3.13 16 32 H 0.34 11.40 8.43 -89.70 -0.76 10.65 16 33 H 0.05 0.78 7.85 -2.39 -0.02 0.76 16 34 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.11 0.79 8.07 -2.39 -0.02 0.77 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.94 7.50 -2.39 -0.02 1.92 16 39 H 0.42 2.17 8.23 -92.71 -0.76 1.41 16 40 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.11 0.18 7.70 -2.39 -0.02 0.16 16 43 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.05 1.05 8.02 -2.39 -0.02 1.03 16 49 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.09 1.50 7.90 -2.39 -0.02 1.48 16 Total: -1.00 -77.71 406.78 -2.31 -80.03 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: -1.29 Total: 37.34 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.48 Total: 12.22 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -6.83 Total: -115.61 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -1.70 Total: -59.05 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -77.71 -2.31 -80.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733941817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.861 kcal (2) G-P(sol) polarization free energy of solvation -77.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds