Wall clock time and date at job start Sat Apr 11 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48494 * 109.47166 * 269.99662 * 3 2 1 5 5 H 1.48501 * 109.46982 * 29.99539 * 3 2 1 6 6 H 1.48496 * 109.46958 * 149.99165 * 3 2 1 7 7 C 1.38814 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47503 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00370 * 179.97438 * 13 12 11 15 15 C 1.53038 * 109.46154 * 270.02686 * 14 13 12 16 16 C 1.53188 * 109.31305 * 178.59906 * 15 14 13 17 17 N 1.46933 * 108.76394 * 54.65579 * 16 15 14 18 18 C 1.34775 * 120.62798 * 126.40472 * 17 16 15 19 19 O 1.21279 * 119.99648 * 179.97438 * 18 17 16 20 20 C 1.50694 * 120.00331 * 359.97438 * 18 17 16 21 21 H 1.09004 * 110.21753 * 39.52098 * 20 18 17 22 22 C 1.54477 * 110.24702 * 277.50137 * 20 18 17 23 23 C 1.54629 * 101.76790 * 266.41552 * 22 20 18 24 24 C 1.51283 * 104.19099 * 335.20184 * 23 22 20 25 25 O 1.21284 * 124.93812 * 196.27417 * 24 23 22 26 26 N 1.34416 * 110.11945 * 16.25038 * 24 23 22 27 27 C 1.46925 * 118.73727 * 306.38382 * 17 16 15 28 28 C 1.53046 * 109.45959 * 149.96821 * 14 13 12 29 29 H 0.96996 * 119.99724 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 32 32 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 33 33 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 34 34 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 35 35 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 36 36 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 37 37 H 1.08998 * 109.45707 * 29.99868 * 14 13 12 38 38 H 1.09005 * 109.49648 * 298.56526 * 15 14 13 39 39 H 1.09000 * 109.49718 * 58.66294 * 15 14 13 40 40 H 1.08998 * 109.60192 * 294.86683 * 16 15 14 41 41 H 1.08998 * 109.58848 * 174.43431 * 16 15 14 42 42 H 1.09002 * 110.96659 * 24.53124 * 22 20 18 43 43 H 1.09004 * 110.97432 * 148.29330 * 22 20 18 44 44 H 1.08991 * 110.48855 * 216.52067 * 23 22 20 45 45 H 1.08999 * 110.59937 * 93.92896 * 23 22 20 46 46 H 0.96998 * 124.34823 * 180.43174 * 26 24 23 47 47 H 1.09004 * 109.58236 * 293.81863 * 27 17 16 48 48 H 1.09004 * 109.58146 * 173.39847 * 27 17 16 49 49 H 1.08999 * 109.49996 * 301.33717 * 28 14 13 50 50 H 1.08997 * 109.49595 * 61.43595 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.6164 -2.1912 0.0011 12 6 6.3815 -3.5162 0.0004 13 8 7.7864 -3.2551 0.0010 14 6 8.5964 -4.4324 0.0011 15 6 8.8843 -4.8532 1.4440 16 6 9.7233 -6.1348 1.4402 17 7 10.9256 -5.9103 0.6261 18 6 12.1517 -6.1521 1.1308 19 8 13.1364 -5.9632 0.4485 20 6 12.2991 -6.6572 2.5429 21 1 11.5196 -7.3859 2.7656 22 6 12.2340 -5.4801 3.5412 23 6 13.7306 -5.1349 3.7197 24 6 14.4508 -6.4225 3.3850 25 8 15.6053 -6.6659 3.6656 26 7 13.6248 -7.2579 2.7317 27 6 10.7658 -5.4176 -0.7488 28 6 9.9149 -4.1441 -0.7206 29 1 -0.4849 0.8400 -0.0004 30 1 3.8647 -0.3620 0.0014 31 1 3.8492 -3.0422 -0.8892 32 1 3.8485 -3.0427 0.8907 33 1 5.8798 -1.6196 -0.8889 34 1 5.8797 -1.6197 0.8911 35 1 6.1182 -4.0882 0.8902 36 1 6.1181 -4.0874 -0.8897 37 1 8.0691 -5.2359 -0.5132 38 1 9.4335 -4.0601 1.9516 39 1 7.9440 -5.0357 1.9643 40 1 9.1409 -6.9518 1.0143 41 1 10.0143 -6.3841 2.4606 42 1 11.6875 -4.6381 3.1164 43 1 11.7907 -5.7941 4.4862 44 1 13.9341 -4.8405 4.7492 45 1 14.0262 -4.3427 3.0318 46 1 13.8729 -8.1440 2.4249 47 1 10.2685 -6.1761 -1.3533 48 1 11.7448 -5.1936 -1.1727 49 1 9.7082 -3.8219 -1.7411 50 1 10.4542 -3.3578 -0.1925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734089441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:15 Heat of formation + Delta-G solvation = -103.257209 kcal Electronic energy + Delta-G solvation = -29268.336238 eV Core-core repulsion = 25102.781978 eV Total energy + Delta-G solvation = -4165.554260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.62221 -40.05522 -38.79325 -37.05725 -36.58186 -35.38882 -33.03156 -32.13349 -31.81912 -31.66809 -30.14301 -28.74499 -25.89642 -24.87934 -24.02065 -23.09023 -22.18677 -21.62221 -21.13222 -20.93758 -19.66684 -18.38076 -17.88487 -17.56418 -16.96710 -16.67998 -16.11267 -15.80208 -15.56308 -15.46076 -15.03686 -14.62479 -14.55849 -14.33008 -14.15715 -14.04300 -13.95900 -13.68454 -13.39061 -13.15554 -13.06603 -12.86598 -12.72777 -12.44351 -12.14733 -11.94431 -11.81439 -11.71005 -11.60987 -11.16635 -11.00539 -10.86358 -10.78248 -10.70820 -10.67819 -10.37194 -10.16235 -9.68488 -9.62717 -9.55701 -9.30141 -8.93129 -7.27502 -5.80102 -3.16205 1.90121 2.01002 2.32863 2.82079 3.35746 3.36744 3.39366 3.44045 3.66163 3.72096 3.79739 4.07215 4.17305 4.33504 4.43404 4.45512 4.56740 4.63949 4.69016 4.71497 4.88411 4.91866 4.98141 5.04769 5.09956 5.14319 5.16163 5.24613 5.28239 5.33848 5.39890 5.47867 5.49782 5.63873 5.69124 5.80656 5.89237 5.91391 5.93885 6.15752 6.16712 6.43893 6.64952 6.69359 6.72758 7.09696 7.51353 7.73398 7.95461 8.38833 9.17696 9.90135 10.09784 11.38107 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.001650 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.274114 B =16965.368795 C =17307.457642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.161 3.839 11 C -0.129 4.129 12 C 0.068 3.932 13 O -0.380 6.380 14 C 0.090 3.910 15 C -0.159 4.159 16 C 0.105 3.895 17 N -0.609 5.609 18 C 0.502 3.498 19 O -0.525 6.525 20 C 0.113 3.887 21 H 0.115 0.885 22 C -0.122 4.122 23 C -0.157 4.157 24 C 0.529 3.471 25 O -0.529 6.529 26 N -0.711 5.711 27 C 0.114 3.886 28 C -0.132 4.132 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.414 0.586 47 H 0.072 0.928 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.738 -16.947 5.477 31.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.033 3.967 11 C -0.167 4.167 12 C -0.009 4.009 13 O -0.299 6.299 14 C 0.032 3.968 15 C -0.198 4.198 16 C -0.018 4.018 17 N -0.344 5.344 18 C 0.288 3.712 19 O -0.401 6.401 20 C 0.003 3.997 21 H 0.132 0.868 22 C -0.160 4.160 23 C -0.197 4.197 24 C 0.315 3.685 25 O -0.405 6.405 26 N -0.366 5.366 27 C -0.008 4.008 28 C -0.170 4.170 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.253 0.747 47 H 0.090 0.910 48 H 0.117 0.883 49 H 0.104 0.896 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 26.712 -16.761 5.307 31.979 hybrid contribution 0.172 0.587 -0.261 0.665 sum 26.884 -16.174 5.046 31.778 Atomic orbital electron populations 1.69705 1.05107 1.25894 1.57427 1.24684 0.95268 0.97286 1.01897 0.86527 0.79221 0.84827 0.77851 1.21008 1.21657 1.20276 1.19057 0.80562 0.94798 1.43286 0.89202 1.42683 1.04085 1.02201 1.91227 1.20485 0.87940 0.89575 0.98669 1.21719 0.95566 0.96191 1.03198 1.22515 0.79973 0.98289 1.00116 1.87945 1.16998 1.30024 1.94980 1.21983 0.91777 0.88453 0.94572 1.22464 1.01004 0.97621 0.98665 1.21860 0.85936 0.98052 0.95938 1.48191 1.05765 1.65735 1.14696 1.21007 0.82944 0.78103 0.89155 1.90748 1.37303 1.51350 1.60663 1.21623 0.87331 0.97875 0.92913 0.86759 1.22636 0.97195 0.96981 0.99185 1.22364 0.94675 0.97260 1.05429 1.20821 0.85499 0.85906 0.76248 1.90776 1.16095 1.78536 1.55054 1.45902 1.12545 1.19144 1.59042 1.21642 1.01797 0.95255 0.82125 1.21992 0.94803 0.97953 1.02237 0.93015 0.80557 0.95476 0.95520 0.91222 0.91237 0.93213 0.93142 0.91910 0.90300 0.89806 0.90513 0.89204 0.88459 0.88150 0.87307 0.87355 0.74654 0.90962 0.88339 0.89633 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 21.99 27.74 -169.99 -4.71 17.28 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.10 16 7 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 N -0.76 -17.91 5.41 -59.91 -0.32 -18.24 16 10 C 0.16 2.97 6.26 -4.04 -0.03 2.94 16 11 C -0.13 -1.89 5.70 -26.73 -0.15 -2.04 16 12 C 0.07 0.76 5.75 37.16 0.21 0.98 16 13 O -0.38 -4.18 9.99 -35.23 -0.35 -4.53 16 14 C 0.09 0.67 2.57 -26.69 -0.07 0.60 16 15 C -0.16 -0.83 5.69 -26.61 -0.15 -0.98 16 16 C 0.10 0.33 6.21 -3.71 -0.02 0.31 16 17 N -0.61 -3.35 2.97 -172.77 -0.51 -3.87 16 18 C 0.50 3.56 6.86 -10.99 -0.08 3.48 16 19 O -0.53 -6.02 15.99 5.56 0.09 -5.93 16 20 C 0.11 0.48 2.94 -68.17 -0.20 0.27 16 21 H 0.11 0.14 6.81 -51.93 -0.35 -0.21 16 22 C -0.12 -0.36 6.15 -25.10 -0.15 -0.52 16 23 C -0.16 -0.87 6.85 -26.74 -0.18 -1.05 16 24 C 0.53 4.79 8.43 -10.86 -0.09 4.70 16 25 O -0.53 -7.13 18.03 5.55 0.10 -7.03 16 26 N -0.71 -4.63 5.47 -53.88 -0.29 -4.93 16 27 C 0.11 0.70 6.43 -3.71 -0.02 0.68 16 28 C -0.13 -0.91 5.73 -26.61 -0.15 -1.06 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.36 8.37 5.53 -40.82 -0.23 8.15 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.50 7.84 -51.93 -0.41 0.09 16 36 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.42 7.84 -51.93 -0.41 0.01 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.09 0.08 5.32 -51.93 -0.28 -0.19 16 42 H 0.10 0.26 7.89 -51.93 -0.41 -0.15 16 43 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.41 2.33 8.96 -40.82 -0.37 1.97 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.10 0.76 7.01 -51.93 -0.36 0.39 16 49 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -37.87 398.99 -8.86 -46.73 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.30 Total: 1.69 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.34 Total: 1.20 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.36 Total: -55.42 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.16 Total: -17.49 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.87 -8.86 -46.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734089441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.528 kcal (2) G-P(sol) polarization free energy of solvation -37.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds