Wall clock time and date at job start Sat Apr 11 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48494 * 109.47166 * 269.99662 * 3 2 1 5 5 H 1.48501 * 109.46982 * 29.99539 * 3 2 1 6 6 H 1.48496 * 109.46958 * 149.99165 * 3 2 1 7 7 C 1.38814 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47503 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00370 * 179.97438 * 13 12 11 15 15 C 1.53038 * 109.46154 * 270.02686 * 14 13 12 16 16 C 1.53188 * 109.31305 * 178.59906 * 15 14 13 17 17 N 1.46933 * 108.76394 * 54.65579 * 16 15 14 18 18 C 1.34775 * 120.62798 * 126.40472 * 17 16 15 19 19 O 1.21279 * 119.99648 * 179.97438 * 18 17 16 20 20 C 1.50694 * 120.00331 * 359.97438 * 18 17 16 21 21 H 1.09004 * 110.21753 * 39.52098 * 20 18 17 22 22 C 1.54477 * 110.24702 * 277.50137 * 20 18 17 23 23 C 1.54629 * 101.76790 * 266.41552 * 22 20 18 24 24 C 1.51283 * 104.19099 * 335.20184 * 23 22 20 25 25 O 1.21284 * 124.93812 * 196.27417 * 24 23 22 26 26 N 1.34416 * 110.11945 * 16.25038 * 24 23 22 27 27 C 1.46925 * 118.73727 * 306.38382 * 17 16 15 28 28 C 1.53046 * 109.45959 * 149.96821 * 14 13 12 29 29 H 0.96996 * 119.99724 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 32 32 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 33 33 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 34 34 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 35 35 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 36 36 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 37 37 H 1.08998 * 109.45707 * 29.99868 * 14 13 12 38 38 H 1.09005 * 109.49648 * 298.56526 * 15 14 13 39 39 H 1.09000 * 109.49718 * 58.66294 * 15 14 13 40 40 H 1.08998 * 109.60192 * 294.86683 * 16 15 14 41 41 H 1.08998 * 109.58848 * 174.43431 * 16 15 14 42 42 H 1.09002 * 110.96659 * 24.53124 * 22 20 18 43 43 H 1.09004 * 110.97432 * 148.29330 * 22 20 18 44 44 H 1.08991 * 110.48855 * 216.52067 * 23 22 20 45 45 H 1.08999 * 110.59937 * 93.92896 * 23 22 20 46 46 H 0.96998 * 124.34823 * 180.43174 * 26 24 23 47 47 H 1.09004 * 109.58236 * 293.81863 * 27 17 16 48 48 H 1.09004 * 109.58146 * 173.39847 * 27 17 16 49 49 H 1.08999 * 109.49996 * 301.33717 * 28 14 13 50 50 H 1.08997 * 109.49595 * 61.43595 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.6164 -2.1912 0.0011 12 6 6.3815 -3.5162 0.0004 13 8 7.7864 -3.2551 0.0010 14 6 8.5964 -4.4324 0.0011 15 6 8.8843 -4.8532 1.4440 16 6 9.7233 -6.1348 1.4402 17 7 10.9256 -5.9103 0.6261 18 6 12.1517 -6.1521 1.1308 19 8 13.1364 -5.9632 0.4485 20 6 12.2991 -6.6572 2.5429 21 1 11.5196 -7.3859 2.7656 22 6 12.2340 -5.4801 3.5412 23 6 13.7306 -5.1349 3.7197 24 6 14.4508 -6.4225 3.3850 25 8 15.6053 -6.6659 3.6656 26 7 13.6248 -7.2579 2.7317 27 6 10.7658 -5.4176 -0.7488 28 6 9.9149 -4.1441 -0.7206 29 1 -0.4849 0.8400 -0.0004 30 1 3.8647 -0.3620 0.0014 31 1 3.8492 -3.0422 -0.8892 32 1 3.8485 -3.0427 0.8907 33 1 5.8798 -1.6196 -0.8889 34 1 5.8797 -1.6197 0.8911 35 1 6.1182 -4.0882 0.8902 36 1 6.1181 -4.0874 -0.8897 37 1 8.0691 -5.2359 -0.5132 38 1 9.4335 -4.0601 1.9516 39 1 7.9440 -5.0357 1.9643 40 1 9.1409 -6.9518 1.0143 41 1 10.0143 -6.3841 2.4606 42 1 11.6875 -4.6381 3.1164 43 1 11.7907 -5.7941 4.4862 44 1 13.9341 -4.8405 4.7492 45 1 14.0262 -4.3427 3.0318 46 1 13.8729 -8.1440 2.4249 47 1 10.2685 -6.1761 -1.3533 48 1 11.7448 -5.1936 -1.1727 49 1 9.7082 -3.8219 -1.7411 50 1 10.4542 -3.3578 -0.1925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734089441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:11 Heat of formation + Delta-G solvation = -132.751467 kcal Electronic energy + Delta-G solvation = -29269.615205 eV Core-core repulsion = 25102.781978 eV Total energy + Delta-G solvation = -4166.833227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.12065 -40.62872 -39.49886 -37.83065 -37.25497 -36.90470 -34.33740 -33.25920 -32.37019 -32.14497 -31.63858 -29.25276 -27.11413 -25.70954 -24.45876 -23.93319 -23.38676 -22.55960 -22.01254 -21.55367 -20.16188 -19.60227 -18.83462 -18.43247 -17.68199 -17.31733 -16.86956 -16.61619 -16.42363 -16.11608 -15.96874 -15.72089 -15.47186 -15.36618 -14.95433 -14.78276 -14.73114 -14.64855 -14.35161 -14.07457 -13.76688 -13.68403 -13.57528 -13.27690 -12.93833 -12.92185 -12.50269 -12.46790 -12.44184 -12.31375 -12.18915 -12.05683 -11.92424 -11.80585 -11.74769 -11.42966 -11.38275 -11.06475 -10.97369 -10.37688 -10.10818 -9.77711 -9.30724 -8.03249 -5.37297 1.36820 1.39301 1.42196 1.43887 1.49758 1.85087 2.36098 2.48655 2.62163 3.25178 3.28375 3.34903 3.44989 3.68432 3.76401 3.85937 3.88100 4.04733 4.10512 4.12865 4.18698 4.29458 4.31605 4.38743 4.39300 4.47183 4.56661 4.69840 4.73884 4.75497 4.79466 4.80252 4.84621 4.85728 4.88803 4.97450 5.02804 5.17063 5.29120 5.33349 5.35633 5.46775 5.67256 5.75066 5.87911 6.20725 6.29528 6.37827 7.01234 7.07436 7.13583 7.83896 8.02023 9.17923 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.001650 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.274114 B =16965.368795 C =17307.457642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.064 4.064 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.251 1.251 7 C -0.239 4.239 8 H 0.059 0.941 9 N -0.762 5.762 10 C 0.156 3.844 11 C -0.118 4.118 12 C 0.076 3.924 13 O -0.401 6.401 14 C 0.083 3.917 15 C -0.155 4.155 16 C 0.104 3.896 17 N -0.604 5.604 18 C 0.499 3.501 19 O -0.580 6.580 20 C 0.113 3.887 21 H 0.158 0.842 22 C -0.112 4.112 23 C -0.157 4.157 24 C 0.516 3.484 25 O -0.587 6.587 26 N -0.706 5.706 27 C 0.117 3.883 28 C -0.125 4.125 29 H 0.258 0.742 30 H 0.366 0.634 31 H 0.029 0.971 32 H 0.032 0.968 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.135 0.865 44 H 0.123 0.877 45 H 0.097 0.903 46 H 0.416 0.584 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.998 -17.637 6.637 32.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.176 1.176 7 C -0.370 4.370 8 H 0.077 0.923 9 N -0.408 5.408 10 C 0.030 3.970 11 C -0.156 4.156 12 C -0.001 4.001 13 O -0.321 6.321 14 C 0.026 3.974 15 C -0.193 4.193 16 C -0.018 4.018 17 N -0.337 5.337 18 C 0.286 3.714 19 O -0.459 6.459 20 C 0.005 3.995 21 H 0.175 0.825 22 C -0.150 4.150 23 C -0.197 4.197 24 C 0.304 3.696 25 O -0.467 6.467 26 N -0.359 5.359 27 C -0.006 4.006 28 C -0.164 4.164 29 H 0.067 0.933 30 H 0.199 0.801 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.139 0.861 42 H 0.123 0.877 43 H 0.153 0.847 44 H 0.141 0.859 45 H 0.116 0.884 46 H 0.255 0.745 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 26.952 -17.493 6.464 32.775 hybrid contribution 0.050 0.698 -0.697 0.988 sum 27.002 -16.795 5.767 32.318 Atomic orbital electron populations 1.69884 1.07111 1.26761 1.59518 1.25534 0.96162 1.01352 1.02491 0.85396 0.78677 0.79507 0.78137 1.20463 1.22101 1.17590 1.19069 0.82694 0.93637 1.41603 0.92286 1.42745 1.02600 1.04368 1.91085 1.20665 0.90110 0.87456 0.98729 1.21534 0.93107 0.98191 1.02782 1.22335 0.80139 0.96202 1.01402 1.87901 1.16800 1.32107 1.95263 1.22223 0.91127 0.87643 0.96428 1.22426 1.01755 0.98316 0.96850 1.22114 0.84716 0.97521 0.97405 1.48272 1.06258 1.64636 1.14511 1.21557 0.82560 0.77333 0.89952 1.90737 1.39105 1.53806 1.62235 1.21946 0.87031 0.99319 0.91253 0.82452 1.22760 0.95231 0.96648 1.00319 1.22399 0.96308 0.95034 1.05942 1.21492 0.85051 0.87222 0.75853 1.90732 1.18558 1.79859 1.57540 1.46003 1.13310 1.18974 1.57640 1.21547 1.00644 0.95393 0.83010 1.21909 0.94808 0.97817 1.01824 0.93280 0.80107 0.95340 0.95006 0.91821 0.91480 0.91503 0.92297 0.90630 0.90958 0.88810 0.88659 0.86096 0.87691 0.84724 0.85866 0.88426 0.74489 0.89405 0.90428 0.90099 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.44 13.97 21.65 0.30 -62.14 16 2 C -0.06 -3.73 5.50 84.86 0.47 -3.27 16 3 Si 0.96 44.98 27.74 68.60 1.90 46.88 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 7 C -0.24 -13.55 10.47 84.03 0.88 -12.67 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 9 N -0.76 -35.05 5.41 -343.46 -1.86 -36.91 16 10 C 0.16 5.50 6.26 86.38 0.54 6.04 16 11 C -0.12 -3.18 5.70 30.59 0.17 -3.00 16 12 C 0.08 1.48 5.75 71.98 0.41 1.89 16 13 O -0.40 -7.76 9.99 -148.98 -1.49 -9.25 16 14 C 0.08 0.99 2.57 30.62 0.08 1.06 16 15 C -0.16 -1.00 5.69 30.67 0.17 -0.83 16 16 C 0.10 0.18 6.21 86.36 0.54 0.72 16 17 N -0.60 -5.04 2.97 -818.92 -2.43 -7.48 16 18 C 0.50 6.15 6.86 87.66 0.60 6.75 16 19 O -0.58 -13.36 15.99 -3.03 -0.05 -13.41 16 20 C 0.11 0.60 2.94 44.69 0.13 0.73 16 21 H 0.16 -0.47 6.81 -2.38 -0.02 -0.49 16 22 C -0.11 -0.26 6.15 31.65 0.19 -0.07 16 23 C -0.16 -1.54 6.85 30.59 0.21 -1.33 16 24 C 0.52 9.30 8.43 87.90 0.74 10.05 16 25 O -0.59 -16.62 18.03 -3.04 -0.05 -16.67 16 26 N -0.71 -8.36 5.47 -442.98 -2.42 -10.78 16 27 C 0.12 1.28 6.43 86.36 0.56 1.84 16 28 C -0.13 -1.56 5.73 30.67 0.18 -1.39 16 29 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.37 16.10 5.53 -92.70 -0.51 15.59 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.08 7.84 -2.39 -0.02 1.06 16 36 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 37 H 0.08 0.72 7.79 -2.39 -0.02 0.70 16 38 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.09 0.49 7.84 -2.39 -0.02 0.47 16 40 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.12 -0.51 5.32 -2.39 -0.01 -0.52 16 42 H 0.10 0.17 7.89 -2.39 -0.02 0.15 16 43 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.42 4.40 8.96 -92.71 -0.83 3.57 16 47 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.08 1.21 7.01 -2.39 -0.02 1.20 16 49 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -86.48 398.99 -0.67 -87.15 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.45 Total: 16.06 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 5.88 Total: 6.53 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -6.41 Total: -117.30 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -1.59 Total: -39.33 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.88 kcal Total: -86.48 -0.67 -87.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734089441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.597 kcal (2) G-P(sol) polarization free energy of solvation -86.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds