Wall clock time and date at job start Sat Apr 11 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46506 * 119.99773 * 2 1 4 4 C 1.52994 * 109.47028 * 269.99608 * 3 2 1 5 5 H 1.09008 * 109.47368 * 60.00661 * 4 3 2 6 6 O 1.42892 * 109.47559 * 300.00232 * 4 3 2 7 7 C 1.53008 * 109.47187 * 179.97438 * 4 3 2 8 8 N 1.46892 * 109.47069 * 185.00143 * 7 4 3 9 9 C 1.46907 * 111.00087 * 179.97438 * 8 7 4 10 10 C 1.50692 * 109.47664 * 179.97438 * 9 8 7 11 11 O 1.21295 * 119.99840 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00253 * 179.97438 * 10 9 8 13 13 C 1.37100 * 120.00096 * 180.02562 * 12 10 9 14 14 H 1.08003 * 119.99923 * 0.02562 * 13 12 10 15 15 C 1.38950 * 119.99793 * 180.02562 * 13 12 10 16 16 N 1.31409 * 120.00405 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99679 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47316 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46949 * 119.99950 * 17 15 13 20 20 H 1.48498 * 109.46885 * 239.99868 * 17 15 13 21 21 C 1.34770 * 120.00243 * 179.97438 * 2 1 3 22 22 O 1.21281 * 120.00182 * 184.97064 * 21 2 1 23 23 C 1.50706 * 119.99881 * 4.97224 * 21 2 1 24 24 C 1.52996 * 110.34280 * 299.72793 * 23 21 2 25 25 C 1.51098 * 110.38774 * 62.01906 * 23 21 2 26 26 C 1.30524 * 111.10973 * 135.36189 * 25 23 21 27 27 C 1.51105 * 111.09983 * 359.97438 * 26 25 23 28 28 C 1.54642 * 104.82654 * 343.50652 * 27 26 25 29 29 H 1.08990 * 109.47089 * 272.21699 * 1 2 3 30 30 H 1.09003 * 109.47209 * 32.22008 * 1 2 3 31 31 H 1.08994 * 109.46935 * 152.21440 * 1 2 3 32 32 H 1.09001 * 109.47094 * 30.00137 * 3 2 1 33 33 H 1.08997 * 109.47222 * 149.99695 * 3 2 1 34 34 H 0.96700 * 114.00004 * 299.99948 * 6 4 3 35 35 H 1.09002 * 109.46635 * 305.00412 * 7 4 3 36 36 H 1.09000 * 109.46830 * 65.00069 * 7 4 3 37 37 H 1.00891 * 111.00341 * 303.95463 * 8 7 4 38 38 H 1.09001 * 109.46812 * 300.00525 * 9 8 7 39 39 H 1.09003 * 109.46683 * 59.99969 * 9 8 7 40 40 H 0.96999 * 119.99993 * 0.02562 * 12 10 9 41 41 H 0.96996 * 119.99663 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.47060 * 180.83338 * 24 23 21 43 43 H 1.08992 * 109.47429 * 300.83423 * 24 23 21 44 44 H 1.09000 * 109.47030 * 60.83900 * 24 23 21 45 45 H 1.08003 * 124.44526 * 315.38343 * 25 23 21 46 46 H 1.07997 * 124.45352 * 180.02562 * 26 25 23 47 47 H 1.08993 * 110.38705 * 102.37104 * 27 26 25 48 48 H 1.09004 * 110.38906 * 224.63893 * 27 26 25 49 49 H 1.08990 * 111.03740 * 142.72396 * 28 27 26 50 50 H 1.09003 * 111.03151 * 266.66152 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 1.5001 1.8408 -1.9564 6 8 3.2248 0.7146 -2.1161 7 6 3.2170 3.0358 -1.4425 8 7 3.3572 3.5201 -2.8222 9 6 4.0875 4.7943 -2.8612 10 6 4.2120 5.2584 -4.2895 11 8 3.7386 4.5935 -5.1867 12 7 4.8484 6.4128 -4.5699 13 6 4.9612 6.8353 -5.8692 14 1 4.5397 6.2433 -6.6681 15 6 5.6179 8.0253 -6.1583 16 7 6.1313 8.7454 -5.1864 17 14 5.7710 8.6013 -7.9287 18 1 5.1143 7.6185 -8.8276 19 1 5.1139 9.9247 -8.0772 20 1 7.2069 8.7183 -8.2887 21 6 2.1389 -1.1671 0.0005 22 8 3.3483 -1.1690 0.0915 23 6 1.3897 -2.4699 -0.1120 24 6 0.4168 -2.6268 1.0583 25 6 0.6475 -2.5384 -1.4264 26 6 0.7984 -3.7054 -1.9912 27 6 1.6671 -4.6096 -1.1479 28 6 2.3796 -3.6611 -0.1559 29 1 -0.3633 0.0398 1.0268 30 1 -0.3634 0.8694 -0.5479 31 1 -0.3633 -0.9091 -0.4790 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1385 0.5139 34 1 4.0873 0.5461 -1.7125 35 1 2.6691 3.7712 -0.8532 36 1 4.2052 2.8853 -1.0080 37 1 3.8050 2.8285 -3.4044 38 1 3.5453 5.5416 -2.2818 39 1 5.0818 4.6563 -2.4364 40 1 5.2267 6.9447 -3.8523 41 1 6.5893 9.5762 -5.3882 42 1 -0.1061 -3.5791 0.9710 43 1 0.9704 -2.6010 1.9969 44 1 -0.3069 -1.8119 1.0409 45 1 0.0683 -1.7280 -1.8438 46 1 0.3607 -3.9874 -2.9373 47 1 1.0532 -5.3311 -0.6089 48 1 2.3974 -5.1246 -1.7720 49 1 2.4797 -4.1248 0.8254 50 1 3.3508 -3.3502 -0.5409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734527797.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:33 Heat of formation + Delta-G solvation = -117.223827 kcal Electronic energy + Delta-G solvation = -29676.860661 eV Core-core repulsion = 25510.700763 eV Total energy + Delta-G solvation = -4166.159898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.81686 -40.22754 -39.39649 -38.29365 -36.57260 -36.14838 -35.55753 -33.29314 -32.63615 -31.22030 -29.96508 -28.74604 -27.82483 -26.78496 -26.00887 -24.72367 -22.80022 -21.89857 -21.10158 -20.52202 -19.93659 -19.82376 -18.22897 -17.77195 -17.43614 -17.24617 -17.01625 -16.74133 -16.33730 -16.21321 -15.97907 -15.88440 -15.43967 -15.12113 -14.82966 -14.41121 -14.35737 -14.23330 -14.03376 -13.66247 -13.48969 -13.38092 -13.32360 -13.23644 -13.03812 -12.81269 -12.67536 -12.62182 -12.44675 -12.42758 -12.19151 -12.12738 -12.05612 -12.02376 -11.60980 -11.53682 -11.27375 -10.70223 -10.37518 -10.03790 -9.86711 -9.54407 -9.36809 -8.48748 -5.97670 1.21166 1.35361 1.40605 1.55182 1.74068 2.02361 2.03878 2.28153 2.88464 3.18159 3.39661 3.44462 3.51937 3.58318 3.83625 3.92370 4.03310 4.09267 4.12425 4.23967 4.30096 4.36551 4.38619 4.41930 4.47586 4.52663 4.60724 4.63586 4.70001 4.73785 4.74074 4.75781 4.90517 4.96121 5.01409 5.11446 5.17937 5.20762 5.32520 5.39234 5.50530 5.56172 5.85828 5.90784 6.07729 6.32353 6.40894 6.58017 6.72760 7.10570 7.21676 7.53531 8.09317 8.68858 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.001801 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.264806 B =15542.231834 C =15997.131930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.605 5.605 3 C 0.087 3.913 4 C 0.100 3.900 5 H 0.098 0.902 6 O -0.570 6.570 7 C 0.033 3.967 8 N -0.680 5.680 9 C 0.065 3.935 10 C 0.435 3.565 11 O -0.625 6.625 12 N -0.572 5.572 13 C -0.335 4.335 14 H 0.077 0.923 15 C -0.014 4.014 16 N -0.919 5.919 17 Si 0.994 3.006 18 H -0.274 1.274 19 H -0.269 1.269 20 H -0.270 1.270 21 C 0.528 3.472 22 O -0.579 6.579 23 C -0.055 4.055 24 C -0.142 4.142 25 C -0.174 4.174 26 C -0.150 4.150 27 C -0.101 4.101 28 C -0.109 4.109 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.376 0.624 35 H 0.101 0.899 36 H 0.041 0.959 37 H 0.343 0.657 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.137 0.863 46 H 0.141 0.859 47 H 0.096 0.904 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.571 -22.196 18.567 31.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.336 5.336 3 C -0.036 4.036 4 C 0.040 3.960 5 H 0.115 0.885 6 O -0.375 6.375 7 C -0.096 4.096 8 N -0.312 5.312 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.209 5.209 13 C -0.464 4.464 14 H 0.095 0.905 15 C -0.213 4.213 16 N -0.560 5.560 17 Si 0.818 3.182 18 H -0.199 1.199 19 H -0.194 1.194 20 H -0.195 1.195 21 C 0.317 3.683 22 O -0.458 6.458 23 C -0.058 4.058 24 C -0.199 4.199 25 C -0.192 4.192 26 C -0.168 4.168 27 C -0.138 4.138 28 C -0.147 4.147 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.134 0.866 33 H 0.095 0.905 34 H 0.224 0.776 35 H 0.119 0.881 36 H 0.059 0.941 37 H 0.162 0.838 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.154 0.846 46 H 0.159 0.841 47 H 0.115 0.885 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.307 -22.156 17.655 31.738 hybrid contribution 1.946 0.715 -0.194 2.082 sum -12.361 -21.441 17.461 30.289 Atomic orbital electron populations 1.22546 0.77754 1.05051 1.03473 1.47672 1.08062 1.05075 1.72835 1.22139 0.99015 0.86227 0.96252 1.22348 0.94997 0.85640 0.93039 0.88463 1.86584 1.33615 1.59954 1.57382 1.22680 0.99977 0.97597 0.89374 1.60030 1.55846 1.04776 1.10584 1.21558 0.98492 0.94014 0.92667 1.20917 0.82234 0.82534 0.92018 1.90500 1.53166 1.57639 1.49846 1.41928 1.50080 1.20352 1.08589 1.19704 1.35488 1.06011 0.85232 0.90467 1.26062 0.95727 0.95653 1.03885 1.69674 1.37318 1.15412 1.33628 0.84854 0.78312 0.78107 0.76946 1.19912 1.19400 1.19539 1.20866 0.87330 0.86065 0.74043 1.90607 1.16037 1.87710 1.51483 1.20723 0.96106 0.92026 0.96987 1.22082 0.98377 1.04705 0.94758 1.23156 1.01739 0.98972 0.95305 1.23582 0.98323 0.95623 0.99281 1.21437 0.98031 0.97684 0.96604 1.22526 0.97546 0.93959 1.00693 0.90231 0.90146 0.88732 0.86572 0.90453 0.77645 0.88084 0.94111 0.83799 0.87267 0.91831 0.76900 0.91238 0.90092 0.92344 0.89408 0.84585 0.84131 0.88534 0.90699 0.89687 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 8.56 127.77 1.09 1.60 16 2 N -0.61 -10.06 2.83 -846.77 -2.39 -12.45 16 3 C 0.09 1.45 5.18 86.38 0.45 1.90 16 4 C 0.10 2.17 3.47 30.59 0.11 2.28 16 5 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 6 O -0.57 -15.75 11.78 -147.19 -1.73 -17.48 16 7 C 0.03 0.76 5.36 86.31 0.46 1.22 16 8 N -0.68 -22.52 6.13 -517.92 -3.17 -25.69 16 9 C 0.07 2.29 6.17 85.55 0.53 2.82 16 10 C 0.44 21.49 7.82 87.66 0.69 22.18 16 11 O -0.62 -36.25 15.78 -3.08 -0.05 -36.30 16 12 N -0.57 -30.10 5.29 -306.99 -1.62 -31.73 16 13 C -0.33 -19.48 9.68 84.04 0.81 -18.66 16 14 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 15 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 16 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 17 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 C 0.53 11.34 5.96 87.66 0.52 11.86 16 22 O -0.58 -16.75 14.21 -1.24 -0.02 -16.77 16 23 C -0.06 -0.89 0.56 -52.88 -0.03 -0.92 16 24 C -0.14 -1.43 8.14 71.98 0.59 -0.84 16 25 C -0.17 -2.63 8.09 26.26 0.21 -2.42 16 26 C -0.15 -2.09 10.78 26.27 0.28 -1.81 16 27 C -0.10 -1.30 6.80 30.54 0.21 -1.09 16 28 C -0.11 -1.87 6.01 31.82 0.19 -1.67 16 29 H 0.08 0.45 7.38 -2.39 -0.02 0.43 16 30 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 31 H 0.09 0.81 3.30 -2.39 -0.01 0.80 16 32 H 0.12 1.23 8.07 -2.39 -0.02 1.21 16 33 H 0.08 1.48 7.36 -2.39 -0.02 1.46 16 34 H 0.38 9.70 8.62 -74.06 -0.64 9.06 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.34 12.88 7.99 -89.70 -0.72 12.16 16 38 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 41 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 0.61 4.49 -2.39 -0.01 0.60 16 45 H 0.14 1.90 6.39 -2.91 -0.02 1.88 16 46 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 47 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.08 1.22 7.91 -2.39 -0.02 1.20 16 50 H 0.06 1.37 7.05 -2.39 -0.02 1.35 16 Total: -1.00 -77.19 399.36 -1.20 -78.39 By element: Atomic # 1 Polarization: 51.15 SS G_CDS: -1.10 Total: 50.05 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 6.58 Total: 16.17 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -6.91 Total: -119.72 kcal Atomic # 8 Polarization: -68.76 SS G_CDS: -1.80 Total: -70.56 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -77.19 -1.20 -78.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734527797.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.830 kcal (2) G-P(sol) polarization free energy of solvation -77.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds