Wall clock time and date at job start Sat Apr 11 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38043 * 126.29006 * 2 1 4 4 C 1.47423 * 126.41804 * 359.97438 * 3 2 1 5 5 O 1.21609 * 119.99761 * 355.29345 * 4 3 2 6 6 N 1.34773 * 120.00391 * 175.28638 * 4 3 2 7 7 C 1.46499 * 119.99789 * 5.51485 * 6 4 3 8 8 C 1.46496 * 120.00165 * 185.50555 * 6 4 3 9 9 H 1.09003 * 109.47088 * 4.74993 * 8 6 4 10 10 C 1.52994 * 109.47644 * 244.74363 * 8 6 4 11 11 O 1.42901 * 109.47172 * 295.00481 * 10 8 6 12 12 C 1.53009 * 109.46778 * 124.74536 * 8 6 4 13 13 O 1.42893 * 109.46831 * 65.71349 * 12 8 6 14 14 C 1.42902 * 113.99631 * 180.02562 * 13 12 8 15 15 C 1.53005 * 109.47440 * 149.99672 * 14 13 12 16 16 C 1.53001 * 109.47136 * 269.99441 * 14 13 12 17 17 C 1.41296 * 107.16976 * 179.97438 * 3 2 1 18 18 N 1.30458 * 108.02188 * 359.71585 * 17 3 2 19 19 N 1.34262 * 126.29144 * 179.97438 * 2 1 3 20 20 C 1.46497 * 125.75495 * 0.02562 * 19 2 1 21 21 C 1.50699 * 109.47521 * 89.99231 * 20 19 2 22 22 H 1.07998 * 119.99724 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00175 * 179.72285 * 21 20 19 24 24 N 1.31511 * 120.00399 * 180.27678 * 23 21 20 25 25 Si 1.86800 * 119.99878 * 0.27902 * 23 21 20 26 26 H 1.48501 * 109.47212 * 89.99711 * 25 23 21 27 27 H 1.48497 * 109.47131 * 209.99861 * 25 23 21 28 28 H 1.48506 * 109.47210 * 329.99893 * 25 23 21 29 29 H 1.09001 * 109.46872 * 269.97565 * 1 2 3 30 30 H 1.08998 * 109.46843 * 29.98058 * 1 2 3 31 31 H 1.09005 * 109.46881 * 149.98198 * 1 2 3 32 32 H 1.09001 * 109.47101 * 55.48706 * 7 6 4 33 33 H 1.09001 * 109.47041 * 175.49091 * 7 6 4 34 34 H 1.08998 * 109.46981 * 295.48956 * 7 6 4 35 35 H 1.09006 * 109.46989 * 55.00129 * 10 8 6 36 36 H 1.09000 * 109.47562 * 175.00247 * 10 8 6 37 37 H 0.96705 * 113.99854 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.46578 * 185.71142 * 12 8 6 39 39 H 1.08996 * 109.47134 * 305.70797 * 12 8 6 40 40 H 1.08995 * 109.47340 * 29.99758 * 14 13 12 41 41 H 1.09004 * 109.46593 * 59.99909 * 15 14 13 42 42 H 1.08992 * 109.47676 * 179.97438 * 15 14 13 43 43 H 1.08996 * 109.46892 * 300.00375 * 15 14 13 44 44 H 1.09000 * 109.47335 * 179.97438 * 16 14 13 45 45 H 1.08995 * 109.47265 * 300.00363 * 16 14 13 46 46 H 1.09005 * 109.46887 * 60.00158 * 16 14 13 47 47 H 1.07994 * 125.98920 * 179.97438 * 17 3 2 48 48 H 1.08997 * 109.47151 * 329.99316 * 20 19 2 49 49 H 1.09001 * 109.47047 * 209.99615 * 20 19 2 50 50 H 0.97002 * 120.00378 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.7030 2.7888 -0.0874 6 7 2.7961 3.5095 0.0954 7 6 4.2264 3.1930 0.0785 8 6 2.3553 4.9013 0.2165 9 1 1.2686 4.9327 0.2959 10 6 2.7993 5.6863 -1.0194 11 8 4.2265 5.7439 -1.0598 12 6 2.9763 5.5260 1.4676 13 8 4.3938 5.6061 1.3064 14 6 5.0746 6.1776 2.4254 15 6 6.4795 5.5801 2.5273 16 6 5.1771 7.6929 2.2405 17 6 3.6591 0.6498 0.0006 18 7 3.6341 -0.6545 0.0071 19 7 2.3017 -1.0822 0.0005 20 6 1.8501 -2.4758 0.0006 21 6 1.6956 -2.9540 -1.4202 22 1 1.9125 -2.2866 -2.2411 23 6 1.2833 -4.2453 -1.6720 24 7 1.1537 -4.6643 -2.9118 25 14 0.9088 -5.3998 -0.2520 26 1 -0.5240 -5.2791 0.1195 27 1 1.1979 -6.7977 -0.6611 28 1 1.7546 -5.0404 0.9145 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8899 -0.5141 32 1 4.4620 2.6239 -0.8208 33 1 4.8033 4.1178 0.0849 34 1 4.4780 2.6017 0.9589 35 1 2.4301 5.1900 -1.9170 36 1 2.3960 6.6979 -0.9717 37 1 4.5793 6.2276 -1.8192 38 1 2.5700 6.5268 1.6138 39 1 2.7435 4.9090 2.3355 40 1 4.5201 5.9596 3.3381 41 1 7.0340 5.7981 1.6145 42 1 6.9989 6.0162 3.3804 43 1 6.4065 4.5006 2.6589 44 1 5.6959 8.1289 3.0942 45 1 5.7316 7.9109 1.3278 46 1 4.1762 8.1186 2.1680 47 1 4.5449 1.2676 0.0004 48 1 0.8914 -2.5470 0.5142 49 1 2.5846 -3.0957 0.5147 50 1 0.8632 -5.5728 -3.0889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897571649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:51 Heat of formation + Delta-G solvation = -39.420729 kcal Electronic energy + Delta-G solvation = -30962.981560 eV Core-core repulsion = 26800.195457 eV Total energy + Delta-G solvation = -4162.786102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91599 -39.60849 -38.23073 -36.85610 -35.07341 -33.89629 -32.95325 -32.10390 -31.39242 -30.55130 -27.71818 -27.45703 -27.00214 -26.25308 -25.84537 -23.30510 -22.13593 -21.48405 -20.66853 -19.63206 -18.40788 -17.68626 -17.18575 -16.88233 -16.42572 -16.19793 -15.76151 -15.26914 -15.00549 -14.79577 -14.60256 -14.32260 -13.98264 -13.66529 -13.42728 -13.27764 -12.98942 -12.74758 -12.72869 -12.59229 -12.57282 -12.51081 -12.40953 -12.17826 -12.09067 -11.82559 -11.64392 -11.55279 -11.27930 -11.15304 -11.00468 -10.82050 -10.67970 -10.36204 -10.16898 -9.95003 -9.76440 -9.61371 -9.21730 -8.82975 -8.61787 -8.41200 -7.87728 -6.30684 -4.35118 2.17590 2.82985 3.07640 3.12693 3.19913 3.21092 3.39661 3.52107 3.88860 4.17710 4.23233 4.58183 4.70394 4.83487 4.95276 4.96232 5.04361 5.13500 5.15881 5.20417 5.23917 5.29019 5.35921 5.43167 5.50753 5.55529 5.62656 5.65578 5.69213 5.70883 5.77590 5.84951 5.92409 5.95260 6.00085 6.05100 6.30395 6.41353 6.49230 6.55886 6.66562 6.79156 7.12310 7.17352 7.21732 7.59181 7.64026 7.73154 8.23185 8.36670 8.61478 8.73380 9.23413 10.81564 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022112 B = 0.002536 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.977475 B =11038.614596 C =11439.441816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.166 3.834 3 C -0.325 4.325 4 C 0.601 3.399 5 O -0.563 6.563 6 N -0.603 5.603 7 C 0.070 3.930 8 C 0.149 3.851 9 H 0.121 0.879 10 C 0.072 3.928 11 O -0.540 6.540 12 C 0.057 3.943 13 O -0.343 6.343 14 C 0.075 3.925 15 C -0.147 4.147 16 C -0.170 4.170 17 C 0.043 3.957 18 N -0.297 5.297 19 N -0.315 5.315 20 C 0.225 3.775 21 C -0.544 4.544 22 H 0.082 0.918 23 C 0.081 3.919 24 N -0.883 5.883 25 Si 0.873 3.127 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.263 1.263 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.121 0.879 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.365 0.635 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.198 0.802 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 24.297 9.934 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.029 3.971 3 C -0.340 4.340 4 C 0.394 3.606 5 O -0.443 6.443 6 N -0.335 5.335 7 C -0.072 4.072 8 C 0.044 3.956 9 H 0.139 0.861 10 C -0.007 4.007 11 O -0.344 6.344 12 C -0.021 4.021 13 O -0.261 6.261 14 C 0.017 3.983 15 C -0.205 4.205 16 C -0.227 4.227 17 C -0.143 4.143 18 N -0.117 5.117 19 N -0.091 5.091 20 C 0.106 3.894 21 C -0.583 4.583 22 H 0.100 0.900 23 C -0.124 4.124 24 N -0.520 5.520 25 Si 0.698 3.302 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.188 1.188 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.211 0.789 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.214 0.786 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.210 22.578 10.165 25.528 hybrid contribution -0.697 0.353 0.234 0.816 sum 5.513 22.931 10.398 25.775 Atomic orbital electron populations 1.20643 0.86891 1.05209 1.03049 1.21441 0.94862 0.86431 0.94336 1.19613 0.93177 0.92434 1.28786 1.17429 0.84682 0.84120 0.74364 1.90656 1.16986 1.84238 1.52436 1.47442 1.07240 1.04759 1.74107 1.22529 0.80803 1.03987 0.99839 1.21235 1.00027 0.81233 0.93068 0.86145 1.22419 0.82734 0.98048 0.97533 1.86723 1.19023 1.78594 1.50077 1.22794 0.82989 0.98947 0.97363 1.88196 1.17118 1.81918 1.38909 1.22056 0.94065 0.92584 0.89597 1.21827 0.95034 1.01451 1.02150 1.22249 1.01876 0.96341 1.02254 1.24945 0.97577 0.92419 0.99409 1.77177 0.97920 1.12752 1.23857 1.48915 1.02967 1.07416 1.49843 1.20122 0.95643 0.73527 1.00128 1.21110 1.48002 0.99067 0.90074 0.90034 1.24796 0.94344 0.97393 0.95857 1.69865 1.45338 1.18105 1.18672 0.86902 0.79497 0.81012 0.82747 1.19526 1.20387 1.18786 0.90689 0.88297 0.89883 0.92451 0.86158 0.92987 0.93429 0.93424 0.78912 0.92910 0.93146 0.92990 0.91704 0.91868 0.91973 0.92343 0.91748 0.92963 0.78606 0.93545 0.92779 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.39 36.01 0.34 -1.48 16 2 C 0.17 3.46 7.00 -81.60 -0.57 2.89 16 3 C -0.32 -6.24 6.05 -105.07 -0.64 -6.88 16 4 C 0.60 10.49 7.66 -12.52 -0.10 10.39 16 5 O -0.56 -10.77 14.17 5.27 0.07 -10.70 16 6 N -0.60 -8.27 2.76 -175.20 -0.48 -8.75 16 7 C 0.07 0.86 7.17 59.85 0.43 1.29 16 8 C 0.15 1.65 3.13 -67.93 -0.21 1.43 16 9 H 0.12 1.42 6.94 -51.93 -0.36 1.06 16 10 C 0.07 0.66 6.83 37.15 0.25 0.92 16 11 O -0.54 -4.71 9.00 -58.66 -0.53 -5.24 16 12 C 0.06 0.54 5.44 37.16 0.20 0.74 16 13 O -0.34 -3.23 4.95 -58.66 -0.29 -3.52 16 14 C 0.07 0.58 3.34 -26.73 -0.09 0.50 16 15 C -0.15 -1.05 9.56 37.16 0.36 -0.70 16 16 C -0.17 -1.13 9.53 37.16 0.35 -0.77 16 17 C 0.04 0.79 9.92 -16.97 -0.17 0.62 16 18 N -0.30 -6.56 12.50 30.86 0.39 -6.17 16 19 N -0.32 -7.20 3.56 -57.78 -0.21 -7.40 16 20 C 0.22 5.36 4.85 -5.20 -0.03 5.33 16 21 C -0.54 -15.17 9.94 -34.44 -0.34 -15.51 16 22 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 23 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 24 N -0.88 -26.13 13.96 55.43 0.77 -25.36 16 25 Si 0.87 20.02 27.47 -169.99 -4.67 15.35 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.10 1.80 6.41 -51.93 -0.33 1.47 16 31 H 0.08 1.57 7.70 -51.93 -0.40 1.17 16 32 H 0.06 0.73 6.37 -51.93 -0.33 0.40 16 33 H 0.12 1.37 3.75 -51.93 -0.19 1.18 16 34 H 0.05 0.63 6.60 -51.93 -0.34 0.28 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.37 1.90 9.12 45.56 0.42 2.31 16 38 H 0.05 0.41 7.87 -51.93 -0.41 0.00 16 39 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 40 H 0.05 0.40 7.79 -51.93 -0.40 -0.01 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 0.35 7.87 -51.93 -0.41 -0.06 16 47 H 0.20 2.87 4.15 -52.49 -0.22 2.65 16 48 H 0.05 1.02 7.05 -51.93 -0.37 0.65 16 49 H 0.05 1.29 7.19 -51.93 -0.37 0.92 16 50 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -33.36 392.82 -6.45 -39.81 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.12 Total: 5.14 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.31 Total: 0.91 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.47 Total: -47.68 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.74 Total: -19.45 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.36 -6.45 -39.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897571649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.391 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds