Wall clock time and date at job start Sat Apr 11 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47379 * 2 1 4 4 C 1.53004 * 109.47508 * 239.99822 * 2 1 3 5 5 C 1.50702 * 109.47190 * 119.99809 * 2 1 3 6 6 O 1.20783 * 119.99794 * 0.02562 * 5 2 1 7 7 C 1.49088 * 120.00038 * 179.97438 * 5 2 1 8 8 O 1.21362 * 120.00056 * 5.46713 * 7 5 2 9 9 N 1.34774 * 119.99669 * 185.46194 * 7 5 2 10 10 C 1.47751 * 121.65274 * 5.02529 * 9 7 5 11 11 C 1.53018 * 108.78303 * 271.26006 * 10 9 7 12 12 C 1.50704 * 109.44216 * 304.75642 * 11 10 9 13 13 O 1.21272 * 120.24048 * 296.12977 * 12 11 10 14 14 N 1.35502 * 119.51359 * 116.10990 * 12 11 10 15 15 C 1.47125 * 118.10436 * 180.30409 * 14 12 11 16 16 C 1.53009 * 109.10290 * 99.92128 * 15 14 12 17 17 N 1.47768 * 108.78947 * 301.48505 * 16 15 14 18 18 C 1.36944 * 121.64204 * 276.62789 * 17 16 15 19 19 H 1.08000 * 119.99905 * 32.26218 * 18 17 16 20 20 C 1.38810 * 119.99874 * 212.26937 * 18 17 16 21 21 N 1.31618 * 120.00312 * 359.52561 * 20 18 17 22 22 Si 1.86797 * 119.99755 * 179.53526 * 20 18 17 23 23 H 1.48500 * 109.47613 * 59.99459 * 22 20 18 24 24 H 1.48502 * 109.47100 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47079 * 299.99367 * 22 20 18 26 26 C 1.47740 * 116.71520 * 96.90014 * 17 16 15 27 27 C 1.47770 * 121.64825 * 185.04600 * 9 7 5 28 28 H 1.08996 * 109.46875 * 300.00329 * 1 2 3 29 29 H 1.09001 * 109.46523 * 60.00276 * 1 2 3 30 30 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47728 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46991 * 300.00173 * 3 2 1 33 33 H 1.08998 * 109.46913 * 59.99768 * 3 2 1 34 34 H 1.08996 * 109.47101 * 300.00508 * 4 2 1 35 35 H 1.09000 * 109.46708 * 59.99921 * 4 2 1 36 36 H 1.08998 * 109.47265 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.58491 * 151.46842 * 10 9 7 38 38 H 1.08997 * 109.70220 * 31.11740 * 10 9 7 39 39 H 1.09001 * 109.47377 * 184.77163 * 11 10 9 40 40 H 1.08994 * 109.48321 * 64.75815 * 11 10 9 41 41 H 0.96997 * 120.95063 * 0.31500 * 14 12 11 42 42 H 1.09000 * 109.53399 * 340.03253 * 15 14 12 43 43 H 1.09002 * 109.59604 * 219.85013 * 15 14 12 44 44 H 1.08995 * 109.58561 * 181.68440 * 16 15 14 45 45 H 1.09002 * 109.69537 * 61.34186 * 16 15 14 46 46 H 0.96998 * 119.99908 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.57459 * 345.18465 * 26 17 16 48 48 H 1.08997 * 109.57711 * 105.57852 * 26 17 16 49 49 H 1.09007 * 109.58769 * 170.34749 * 27 9 7 50 50 H 1.09002 * 109.58384 * 290.62094 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2474 -1.1698 2.0253 7 6 3.4981 -0.8471 1.4661 8 8 4.2859 -0.3019 0.7211 9 7 3.9482 -1.5760 2.5066 10 6 3.0283 -2.3437 3.3710 11 6 2.5527 -1.4394 4.5101 12 6 3.7475 -0.8828 5.2409 13 8 4.5012 -1.6253 5.8336 14 7 3.9735 0.4532 5.2305 15 6 5.1526 0.9622 5.9482 16 6 6.2753 1.2266 4.9428 17 7 6.5840 -0.0318 4.2323 18 6 7.4254 -0.9708 4.7668 19 1 7.4743 -1.1051 5.8373 20 6 8.2155 -1.7497 3.9326 21 7 8.1491 -1.5924 2.6276 22 14 9.3728 -3.0216 4.6623 23 1 8.5901 -4.0127 5.4436 24 1 10.0984 -3.7159 3.5684 25 1 10.3496 -2.3476 5.5550 26 6 5.9450 -0.2242 2.9142 27 6 5.3862 -1.6466 2.8394 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7209 -1.2494 37 1 3.5498 -3.2073 3.7835 38 1 2.1704 -2.6791 2.7883 39 1 1.9407 -2.0180 5.2021 40 1 1.9624 -0.6195 4.1011 41 1 3.3749 1.0567 4.7633 42 1 5.4830 0.2224 6.6773 43 1 4.8964 1.8895 6.4607 44 1 7.1630 1.5759 5.4700 45 1 5.9555 1.9823 4.2253 46 1 8.7009 -2.1370 2.0447 47 1 5.1338 0.4937 2.7933 48 1 6.6836 -0.0800 2.1258 49 1 5.5146 -2.1407 3.8025 50 1 5.9127 -2.2081 2.0677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070948679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:22 Heat of formation + Delta-G solvation = -59.479792 kcal Electronic energy + Delta-G solvation = -33587.435916 eV Core-core repulsion = 29423.779987 eV Total energy + Delta-G solvation = -4163.655928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89437 -39.22671 -38.13608 -36.39071 -35.82892 -34.93102 -33.69374 -31.33797 -30.42948 -29.26516 -27.58772 -27.36106 -26.90096 -25.55138 -24.09328 -23.60944 -22.36427 -20.27644 -20.01322 -19.75195 -18.26681 -16.95292 -16.65915 -16.51879 -16.15512 -15.81406 -15.19525 -14.99440 -14.87885 -14.47861 -14.22600 -13.96714 -13.60762 -13.41425 -13.31220 -13.15389 -13.00130 -12.81960 -12.64306 -12.36029 -12.29032 -12.18352 -12.08948 -11.69931 -11.66488 -11.34675 -11.30092 -11.15118 -11.07441 -10.99960 -10.78526 -10.61829 -10.50523 -10.18029 -9.95927 -9.86765 -9.64348 -9.08228 -8.81945 -8.63608 -8.32612 -8.09901 -6.48433 -5.60313 -3.16444 1.16915 3.01541 3.29865 3.35725 3.46252 3.50267 3.53130 3.88451 4.13717 4.52860 4.57966 4.77113 4.78933 5.12377 5.21618 5.27581 5.44894 5.45673 5.50590 5.53472 5.53951 5.67110 5.72170 5.72986 5.81178 5.85691 5.85979 5.95451 6.02880 6.04543 6.13525 6.21266 6.21541 6.26894 6.44417 6.58389 6.59975 6.77200 6.95890 6.96657 7.08308 7.16236 7.54633 7.72922 7.95129 8.08024 8.11704 8.37310 8.53195 8.94919 9.32373 9.89458 10.52628 11.39250 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.004739 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.680564 B = 5906.549613 C = 6544.987044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.142 4.142 5 C 0.357 3.643 6 O -0.423 6.423 7 C 0.469 3.531 8 O -0.501 6.501 9 N -0.588 5.588 10 C 0.113 3.887 11 C -0.150 4.150 12 C 0.518 3.482 13 O -0.517 6.517 14 N -0.725 5.725 15 C 0.088 3.912 16 C 0.128 3.872 17 N -0.590 5.590 18 C -0.225 4.225 19 H 0.063 0.937 20 C 0.004 3.996 21 N -0.905 5.905 22 Si 0.898 3.102 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.284 1.284 26 C 0.179 3.821 27 C 0.112 3.888 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.389 0.611 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.039 0.961 46 H 0.252 0.748 47 H 0.016 0.984 48 H 0.067 0.933 49 H 0.105 0.895 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.376 4.696 -3.664 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.201 4.201 4 C -0.200 4.200 5 C 0.228 3.772 6 O -0.293 6.293 7 C 0.253 3.747 8 O -0.377 6.377 9 N -0.323 5.323 10 C -0.011 4.011 11 C -0.192 4.192 12 C 0.303 3.697 13 O -0.391 6.391 14 N -0.376 5.376 15 C -0.039 4.039 16 C 0.000 4.000 17 N -0.313 5.313 18 C -0.355 4.355 19 H 0.081 0.919 20 C -0.194 4.194 21 N -0.550 5.550 22 Si 0.728 3.272 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.211 1.211 26 C 0.054 3.946 27 C -0.008 4.008 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.222 0.778 42 H 0.104 0.896 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.035 0.965 48 H 0.085 0.915 49 H 0.123 0.877 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.679 4.082 -3.331 16.540 hybrid contribution 0.259 -0.513 0.155 0.595 sum -15.419 3.569 -3.176 16.142 Atomic orbital electron populations 1.21763 0.92592 1.02529 1.02220 1.20944 0.96927 0.97617 0.94220 1.21912 1.03944 0.92247 1.01961 1.21878 1.03467 0.99459 0.95157 1.25176 0.89640 0.75979 0.86441 1.90317 1.59257 1.36022 1.43727 1.20527 0.89915 0.81922 0.82372 1.90734 1.56590 1.45810 1.44549 1.49407 1.10734 1.44963 1.27179 1.21977 0.94210 0.93912 0.90997 1.22082 0.97024 1.01381 0.98681 1.20437 0.86106 0.82573 0.80573 1.90730 1.47403 1.57493 1.43518 1.46054 1.28453 1.07389 1.55735 1.22322 0.87055 0.98059 0.96462 1.21453 0.95183 0.89308 0.94073 1.44465 1.51968 1.16069 1.18803 1.18872 1.12983 1.12171 0.91468 0.91943 1.25220 0.98062 1.00618 0.95484 1.69938 1.41619 1.41853 1.01590 0.86431 0.81369 0.81472 0.77919 1.21121 1.21832 1.21088 1.21235 0.93516 0.91091 0.88750 1.22942 0.73476 1.01713 1.02664 0.92126 0.91784 0.92171 0.89533 0.91591 0.92809 0.92747 0.91428 0.90064 0.89655 0.88688 0.88332 0.90455 0.77807 0.89648 0.92894 0.92953 0.94272 0.93756 0.96547 0.91486 0.87717 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 7.76 37.16 0.29 -0.95 16 2 C -0.10 -1.07 0.76 -155.66 -0.12 -1.19 16 3 C -0.14 -1.55 8.29 37.16 0.31 -1.24 16 4 C -0.14 -1.53 8.29 37.16 0.31 -1.23 16 5 C 0.36 4.89 5.89 -29.80 -0.18 4.72 16 6 O -0.42 -5.75 11.48 5.98 0.07 -5.69 16 7 C 0.47 8.05 6.64 -11.76 -0.08 7.98 16 8 O -0.50 -9.77 12.12 5.49 0.07 -9.71 16 9 N -0.59 -10.74 2.44 -172.29 -0.42 -11.16 16 10 C 0.11 1.76 5.17 -3.35 -0.02 1.75 16 11 C -0.15 -2.19 5.85 -27.87 -0.16 -2.35 16 12 C 0.52 9.34 4.72 -10.66 -0.05 9.29 16 13 O -0.52 -11.58 14.88 5.56 0.08 -11.49 16 14 N -0.72 -11.73 4.71 -59.67 -0.28 -12.01 16 15 C 0.09 1.50 6.57 -3.70 -0.02 1.48 16 16 C 0.13 2.54 6.08 -3.34 -0.02 2.52 16 17 N -0.59 -14.22 2.27 -171.20 -0.39 -14.61 16 18 C -0.22 -6.06 8.33 -15.06 -0.13 -6.18 16 19 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 20 C 0.00 0.11 4.85 -17.43 -0.08 0.02 16 21 N -0.90 -25.62 9.35 55.49 0.52 -25.10 16 22 Si 0.90 22.21 29.55 -169.99 -5.02 17.19 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 26 C 0.18 4.25 3.60 -3.36 -0.01 4.24 16 27 C 0.11 2.55 3.79 -3.35 -0.01 2.54 16 28 H 0.06 0.57 8.10 -51.93 -0.42 0.14 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.09 1.15 6.26 -51.93 -0.32 0.82 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.06 6.61 -51.93 -0.34 0.72 16 37 H 0.09 1.41 7.83 -51.93 -0.41 1.00 16 38 H 0.10 1.32 5.80 -51.93 -0.30 1.02 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.03 6.54 -51.93 -0.34 0.69 16 41 H 0.39 5.32 8.70 -40.82 -0.36 4.96 16 42 H 0.09 1.71 7.02 -51.93 -0.36 1.35 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 45 H 0.04 0.73 7.77 -51.93 -0.40 0.33 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.02 0.37 6.11 -51.93 -0.32 0.05 16 48 H 0.07 1.88 6.68 -51.93 -0.35 1.54 16 49 H 0.10 2.67 4.61 -51.93 -0.24 2.43 16 50 H 0.07 1.83 7.28 -51.93 -0.38 1.45 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -31.02 373.42 -7.62 -38.64 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.89 Total: 6.92 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: 0.02 Total: 21.38 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.57 Total: -62.88 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: 0.22 Total: -26.89 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.02 -7.62 -38.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070948679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.838 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds