Wall clock time and date at job start Sat Apr 11 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50701 * 110.56328 * 2 1 4 4 O 1.21280 * 119.99756 * 239.80208 * 3 2 1 5 5 N 1.34778 * 120.00195 * 59.80102 * 3 2 1 6 6 C 1.47759 * 121.66177 * 357.81418 * 5 3 2 7 7 C 1.52995 * 108.78656 * 272.66472 * 6 5 3 8 8 C 1.50697 * 109.49075 * 302.42478 * 7 6 5 9 9 O 1.21290 * 120.45198 * 292.36200 * 8 7 6 10 10 N 1.36104 * 119.09722 * 112.38119 * 8 7 6 11 11 C 1.47664 * 116.59866 * 179.54045 * 10 8 7 12 12 C 1.52997 * 108.86081 * 104.09765 * 11 10 8 13 13 N 1.47737 * 108.83423 * 303.84503 * 12 11 10 14 14 C 1.36938 * 121.64231 * 273.15910 * 13 12 11 15 15 H 1.08002 * 120.00158 * 31.74973 * 14 13 12 16 16 C 1.38812 * 119.99886 * 211.75655 * 14 13 12 17 17 N 1.31612 * 120.00019 * 10.50945 * 16 14 13 18 18 Si 1.86803 * 120.00075 * 190.50839 * 16 14 13 19 19 H 1.48502 * 109.46817 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46917 * 119.99789 * 18 16 14 21 21 H 1.48495 * 109.47256 * 240.00324 * 18 16 14 22 22 C 1.47771 * 116.71840 * 93.17562 * 13 12 11 23 23 C 1.47744 * 121.66355 * 177.53419 * 5 3 2 24 24 C 1.54798 * 110.60332 * 237.20458 * 2 1 3 25 25 C 1.54483 * 104.08628 * 241.37772 * 24 2 1 26 26 O 1.44421 * 104.80356 * 336.02856 * 25 24 2 27 27 C 1.44425 * 105.27498 * 40.51693 * 26 25 24 28 28 H 1.08997 * 109.47069 * 274.68937 * 1 2 3 29 29 H 1.09001 * 109.46587 * 34.69311 * 1 2 3 30 30 H 1.09003 * 109.46782 * 154.68860 * 1 2 3 31 31 H 1.09004 * 109.58613 * 32.45172 * 6 5 3 32 32 H 1.08997 * 109.58735 * 152.87046 * 6 5 3 33 33 H 1.08998 * 109.46824 * 62.43176 * 7 6 5 34 34 H 1.09007 * 109.46865 * 182.41894 * 7 6 5 35 35 H 0.96996 * 121.70265 * 359.56504 * 10 8 7 36 36 H 1.08995 * 109.57520 * 223.91254 * 11 10 8 37 37 H 1.08999 * 109.56942 * 344.29022 * 11 10 8 38 38 H 1.08998 * 109.57212 * 63.65265 * 12 11 10 39 39 H 1.09003 * 109.57091 * 184.04273 * 12 11 10 40 40 H 0.97005 * 120.00266 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.57969 * 343.36887 * 22 13 12 42 42 H 1.08997 * 109.57950 * 103.63359 * 22 13 12 43 43 H 1.08995 * 109.58611 * 172.51868 * 23 5 3 44 44 H 1.09008 * 109.58091 * 292.93797 * 23 5 3 45 45 H 1.08999 * 110.48801 * 122.72287 * 24 2 1 46 46 H 1.09003 * 110.62219 * 0.08483 * 24 2 1 47 47 H 1.09008 * 110.36716 * 217.20090 * 25 24 2 48 48 H 1.08992 * 110.37480 * 94.86578 * 25 24 2 49 49 H 1.08993 * 110.37291 * 78.32198 * 27 26 25 50 50 H 1.09005 * 110.37505 * 200.54539 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0594 1.4110 0.0000 4 8 2.7670 1.7931 -0.9078 5 7 1.7464 2.2482 1.0088 6 6 0.8493 1.8365 2.1083 7 6 -0.5969 2.1173 1.6955 8 6 -0.7508 3.5798 1.3659 9 8 -0.6565 4.4193 2.2363 10 7 -0.9975 3.9457 0.0784 11 6 -1.1489 5.3915 -0.1806 12 6 0.1275 5.9113 -0.8448 13 7 1.2804 5.5921 0.0222 14 6 1.6716 6.4280 1.0338 15 1 0.9375 7.0223 1.5577 16 6 3.0117 6.5116 1.3860 17 7 3.9284 5.9541 0.6237 18 14 3.5140 7.4154 2.9418 19 1 2.3036 7.9480 3.6174 20 1 4.2171 6.4778 3.8537 21 1 4.4203 8.5382 2.5912 22 6 1.9908 4.3267 -0.2562 23 6 2.2881 3.6212 1.0735 24 6 2.0748 -0.7848 -1.2180 25 6 2.8790 -1.9443 -0.5891 26 8 3.2410 -1.4713 0.7265 27 6 2.0713 -0.7812 1.2179 28 1 -0.3633 0.0840 1.0242 29 1 -0.3632 0.8450 -0.5849 30 1 -0.3633 -0.9291 -0.4394 31 1 0.9736 0.7711 2.3019 32 1 1.0893 2.4038 3.0076 33 1 -0.8473 1.5192 0.8194 34 1 -1.2659 1.8575 2.5160 35 1 -1.0706 3.2901 -0.6327 36 1 -1.9986 5.5569 -0.8429 37 1 -1.3101 5.9162 0.7611 38 1 0.2560 5.4310 -1.8148 39 1 0.0572 6.9911 -0.9761 40 1 4.8649 6.0122 0.8700 41 1 1.3662 3.6865 -0.8792 42 1 2.9263 4.5392 -0.7736 43 1 1.8091 4.1650 1.8877 44 1 3.3645 3.5818 1.2413 45 1 2.7257 -0.1510 -1.8202 46 1 1.2550 -1.1726 -1.8227 47 1 3.7732 -2.1490 -1.1781 48 1 2.2602 -2.8383 -0.5140 49 1 1.3286 -1.4969 1.5703 50 1 2.3445 -0.0939 2.0186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071011659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:26 Heat of formation + Delta-G solvation = -48.978242 kcal Electronic energy + Delta-G solvation = -33935.659663 eV Core-core repulsion = 29772.459116 eV Total energy + Delta-G solvation = -4163.200547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93568 -39.19960 -38.05415 -35.90360 -35.64927 -34.07060 -33.33257 -31.37535 -30.55059 -29.96714 -28.94722 -26.92027 -26.42112 -24.75124 -23.67736 -23.11899 -22.57568 -20.94831 -20.21526 -19.80005 -18.39885 -16.96128 -16.87668 -16.53192 -16.24234 -15.89225 -15.48270 -15.24462 -14.99270 -14.78829 -14.45007 -14.07023 -13.68969 -13.52929 -13.34696 -13.21337 -13.12005 -13.01609 -12.67017 -12.62335 -12.34207 -12.15847 -11.71956 -11.60311 -11.53465 -11.42841 -11.09745 -11.06631 -10.84612 -10.79322 -10.61997 -10.45828 -10.28075 -10.01529 -9.94078 -9.81340 -9.65983 -9.12055 -9.08140 -8.68825 -8.30563 -8.08660 -6.45766 -5.57961 -3.15095 2.97762 3.20563 3.40194 3.43566 3.51968 3.55837 3.80777 3.86665 4.24093 4.43397 4.58794 4.75272 4.86898 4.94558 5.01287 5.05756 5.09397 5.25762 5.26834 5.35563 5.41728 5.47641 5.53975 5.57652 5.60834 5.64009 5.68545 5.76624 5.78431 5.92637 6.04415 6.15271 6.16393 6.22015 6.51011 6.60107 6.60571 6.66285 6.79216 6.95125 7.01078 7.10687 7.51685 7.78597 7.96709 8.08592 8.11880 8.50159 8.65813 8.87811 9.32177 9.91361 10.55022 11.40761 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.005069 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.232925 B = 5521.902630 C = 6310.376612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.526 3.474 4 O -0.523 6.523 5 N -0.612 5.612 6 C 0.108 3.892 7 C -0.191 4.191 8 C 0.523 3.477 9 O -0.521 6.521 10 N -0.724 5.724 11 C 0.086 3.914 12 C 0.127 3.873 13 N -0.587 5.587 14 C -0.230 4.230 15 H 0.062 0.938 16 C 0.003 3.997 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.177 3.823 23 C 0.118 3.882 24 C -0.143 4.143 25 C 0.046 3.954 26 O -0.370 6.370 27 C 0.053 3.947 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.392 0.608 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.251 0.749 41 H 0.023 0.977 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 -16.368 -1.844 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C 0.313 3.687 4 O -0.399 6.399 5 N -0.346 5.346 6 C -0.016 4.016 7 C -0.232 4.232 8 C 0.309 3.691 9 O -0.396 6.396 10 N -0.377 5.377 11 C -0.041 4.041 12 C -0.001 4.001 13 N -0.310 5.310 14 C -0.360 4.360 15 H 0.080 0.920 16 C -0.195 4.195 17 N -0.542 5.542 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.219 1.219 22 C 0.052 3.948 23 C -0.003 4.003 24 C -0.181 4.181 25 C -0.031 4.031 26 O -0.288 6.288 27 C -0.024 4.024 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.225 0.775 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.119 0.881 46 H 0.098 0.902 47 H 0.110 0.890 48 H 0.076 0.924 49 H 0.087 0.913 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.037 -15.542 -1.575 18.568 hybrid contribution 0.110 0.137 0.495 0.525 sum -9.927 -15.405 -1.080 18.358 Atomic orbital electron populations 1.22482 0.92184 1.02711 1.03256 1.22196 0.97367 0.94780 0.97701 1.19842 0.80827 0.85905 0.82170 1.90705 1.37379 1.76561 1.35212 1.49075 1.47107 1.15732 1.22679 1.21938 0.87614 1.00713 0.91332 1.22967 0.99289 0.96090 1.04844 1.20431 0.75707 0.90106 0.82880 1.90724 1.48645 1.53180 1.47025 1.46291 1.74123 1.08613 1.08665 1.22461 0.98495 0.81117 1.02013 1.21423 0.88107 0.98157 0.92403 1.44460 1.31829 1.19455 1.35293 1.18935 0.90277 1.18635 1.08152 0.92004 1.25152 0.96015 0.99731 0.98629 1.70014 0.99883 1.47600 1.36693 0.86330 0.78257 0.79429 0.83569 1.20242 1.21813 1.21875 1.21218 0.96181 0.84380 0.93013 1.22696 0.98324 0.76677 1.02563 1.23136 1.00940 0.96972 0.97015 1.23429 0.99646 0.95872 0.84110 1.89173 1.34966 1.73447 1.31214 1.23707 0.88409 0.94679 0.95603 0.90087 0.91337 0.91374 0.90005 0.89116 0.88020 0.88307 0.77457 0.93050 0.89383 0.94541 0.92809 0.93909 0.95865 0.92264 0.88351 0.92020 0.88077 0.90159 0.88995 0.92426 0.91272 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 6.59 37.16 0.24 -1.01 16 2 C -0.12 -1.39 0.69 -153.93 -0.11 -1.49 16 3 C 0.53 8.94 5.76 -10.98 -0.06 8.88 16 4 O -0.52 -11.19 13.83 5.56 0.08 -11.11 16 5 N -0.61 -10.56 2.37 -171.39 -0.41 -10.97 16 6 C 0.11 1.44 4.76 -3.35 -0.02 1.42 16 7 C -0.19 -2.27 5.10 -27.89 -0.14 -2.41 16 8 C 0.52 8.73 4.84 -10.38 -0.05 8.68 16 9 O -0.52 -11.15 15.58 5.55 0.09 -11.06 16 10 N -0.72 -11.12 4.26 -59.15 -0.25 -11.37 16 11 C 0.09 1.44 6.64 -3.41 -0.02 1.42 16 12 C 0.13 2.55 6.08 -3.37 -0.02 2.53 16 13 N -0.59 -14.27 2.37 -170.94 -0.40 -14.68 16 14 C -0.23 -6.25 8.52 -15.06 -0.13 -6.38 16 15 H 0.06 1.75 7.85 -52.49 -0.41 1.33 16 16 C 0.00 0.10 4.47 -17.43 -0.08 0.02 16 17 N -0.90 -26.15 10.17 55.49 0.56 -25.59 16 18 Si 0.89 22.43 29.57 -169.99 -5.03 17.40 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 C 0.18 4.26 3.44 -3.12 -0.01 4.25 16 23 C 0.12 2.68 3.87 -3.13 -0.01 2.67 16 24 C -0.14 -1.62 6.28 -25.01 -0.16 -1.77 16 25 C 0.05 0.49 7.63 37.94 0.29 0.78 16 26 O -0.37 -5.05 11.65 -35.23 -0.41 -5.46 16 27 C 0.05 0.60 5.39 37.93 0.20 0.80 16 28 H 0.08 0.57 4.58 -51.93 -0.24 0.33 16 29 H 0.07 0.62 6.81 -51.93 -0.35 0.27 16 30 H 0.07 0.43 7.61 -51.93 -0.39 0.04 16 31 H 0.08 0.82 3.82 -51.93 -0.20 0.62 16 32 H 0.09 1.35 7.77 -51.93 -0.40 0.94 16 33 H 0.10 0.96 3.27 -51.93 -0.17 0.79 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.39 5.03 8.74 -40.82 -0.36 4.67 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.74 6.83 -51.93 -0.35 1.39 16 38 H 0.04 0.70 7.87 -51.93 -0.41 0.29 16 39 H 0.05 1.09 8.11 -51.93 -0.42 0.67 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.02 0.52 5.84 -51.93 -0.30 0.22 16 42 H 0.06 1.72 6.80 -51.93 -0.35 1.37 16 43 H 0.10 2.47 5.07 -51.93 -0.26 2.20 16 44 H 0.06 1.61 7.58 -51.92 -0.39 1.22 16 45 H 0.10 1.45 6.51 -51.93 -0.34 1.11 16 46 H 0.08 0.70 7.47 -51.93 -0.39 0.31 16 47 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 50 H 0.10 1.18 5.89 -51.93 -0.31 0.87 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -34.75 358.34 -7.73 -42.48 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.29 Total: 6.56 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: -0.07 Total: 18.39 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.50 Total: -62.60 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.25 Total: -27.64 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.75 -7.73 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071011659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.498 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds