Wall clock time and date at job start Sat Apr 11 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46728 * 2 1 4 4 C 1.32995 * 120.00479 * 125.43451 * 3 2 1 5 5 C 1.50697 * 120.00216 * 185.66532 * 4 3 2 6 6 C 1.47107 * 119.99322 * 5.66454 * 4 3 2 7 7 O 1.21608 * 119.99634 * 255.47934 * 6 4 3 8 8 N 1.34778 * 119.99862 * 75.48989 * 6 4 3 9 9 C 1.46497 * 119.99629 * 179.97438 * 8 6 4 10 10 H 1.09003 * 109.57824 * 35.15416 * 9 8 6 11 11 C 1.53123 * 109.52453 * 274.99465 * 9 8 6 12 12 C 1.53033 * 109.30907 * 297.77206 * 11 9 8 13 13 N 1.46843 * 109.52494 * 300.79757 * 12 11 9 14 14 C 1.46900 * 111.00071 * 185.84304 * 13 12 11 15 15 C 1.50707 * 109.46658 * 293.95002 * 14 13 12 16 16 O 1.21287 * 120.00086 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99457 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99588 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00087 * 0.02562 * 18 17 15 20 20 C 1.38957 * 119.99589 * 180.02562 * 18 17 15 21 21 N 1.31404 * 119.99867 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99714 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47035 * 89.99602 * 22 20 18 24 24 H 1.48502 * 109.47271 * 209.99744 * 22 20 18 25 25 H 1.48510 * 109.47350 * 329.99971 * 22 20 18 26 26 C 1.46846 * 111.19826 * 61.74393 * 13 12 11 27 27 C 1.53040 * 109.52202 * 298.26134 * 26 13 12 28 28 H 1.09002 * 109.50326 * 299.23348 * 27 26 13 29 29 O 1.42906 * 109.50341 * 179.12047 * 27 26 13 30 30 H 1.09002 * 109.47066 * 60.00608 * 1 2 3 31 31 H 1.09001 * 109.46415 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47055 * 299.99878 * 1 2 3 33 33 H 1.08994 * 109.47522 * 240.00355 * 2 1 3 34 34 H 1.09002 * 109.47066 * 119.99392 * 2 1 3 35 35 H 1.08000 * 119.99779 * 305.42767 * 3 2 1 36 36 H 1.08994 * 109.47202 * 269.99698 * 5 4 3 37 37 H 1.09001 * 109.47378 * 30.00084 * 5 4 3 38 38 H 1.09007 * 109.47069 * 149.99526 * 5 4 3 39 39 H 0.96994 * 119.99988 * 359.97438 * 8 6 4 40 40 H 1.09002 * 109.50394 * 177.80738 * 11 9 8 41 41 H 1.09000 * 109.49871 * 57.73114 * 11 9 8 42 42 H 1.09000 * 109.46421 * 60.81998 * 12 11 9 43 43 H 1.09000 * 109.46040 * 180.79451 * 12 11 9 44 44 H 1.08997 * 109.47193 * 53.95174 * 14 13 12 45 45 H 1.08996 * 109.47032 * 173.95626 * 14 13 12 46 46 H 0.97000 * 119.99973 * 0.02562 * 17 15 14 47 47 H 0.97002 * 119.99817 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.46207 * 58.27324 * 26 13 12 49 49 H 1.09001 * 109.46450 * 178.25301 * 26 13 12 50 50 H 0.96699 * 113.99712 * 59.99574 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8835 1.8254 0.9384 5 6 3.2866 3.2754 1.0156 6 6 3.4314 0.8572 1.9009 7 8 3.0153 0.8338 3.0434 8 7 4.3947 -0.0035 1.5167 9 6 4.9407 -0.9673 2.4754 10 1 4.1511 -1.2992 3.1496 11 6 6.0600 -0.3061 3.2845 12 6 7.1927 0.1035 2.3405 13 7 7.7045 -1.0835 1.6439 14 6 8.8835 -0.7507 0.8332 15 6 8.4788 0.1747 -0.2854 16 8 7.3223 0.5230 -0.3959 17 7 9.4024 0.6160 -1.1622 18 6 9.0344 1.4582 -2.1795 19 1 8.0046 1.7684 -2.2779 20 6 9.9864 1.9128 -3.0838 21 7 11.2395 1.5358 -2.9636 22 14 9.4850 3.0598 -4.4702 23 1 9.6055 4.4683 -4.0155 24 1 10.3725 2.8397 -5.6403 25 1 8.0781 2.7832 -4.8572 26 6 6.6602 -1.7085 0.8223 27 6 5.5115 -2.1722 1.7210 28 1 5.8826 -2.9066 2.4360 29 8 4.4864 -2.7620 0.9189 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5137 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.7010 2.1107 -0.7621 36 1 4.1709 3.4399 0.4001 37 1 2.4699 3.8994 0.6526 38 1 3.5104 3.5357 2.0502 39 1 4.7264 0.0151 0.6054 40 1 6.4396 -1.0111 4.0242 41 1 5.6703 0.5773 3.7903 42 1 6.8156 0.8191 1.6098 43 1 7.9971 0.5618 2.9158 44 1 9.6283 -0.2597 1.4595 45 1 9.3059 -1.6639 0.4143 46 1 10.3273 0.3377 -1.0735 47 1 11.9042 1.8534 -3.5947 48 1 6.2856 -0.9845 0.0986 49 1 7.0777 -2.5663 0.2950 50 1 4.7785 -3.5307 0.4101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099720651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:02 Heat of formation + Delta-G solvation = -109.128941 kcal Electronic energy + Delta-G solvation = -31648.213543 eV Core-core repulsion = 27482.404666 eV Total energy + Delta-G solvation = -4165.808877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.44791 -39.15886 -37.83386 -35.87726 -35.66027 -34.43374 -33.78612 -32.24232 -31.46641 -31.01901 -29.48532 -27.35073 -26.91186 -24.81628 -23.58389 -22.89815 -22.40055 -21.92013 -19.57618 -19.30275 -18.83145 -17.96630 -17.21253 -16.44820 -16.26284 -15.61943 -15.44243 -15.34000 -15.14779 -14.69822 -14.56665 -14.12158 -14.00363 -13.89913 -13.78182 -13.32488 -13.09541 -13.01873 -12.88405 -12.72529 -12.46818 -12.25538 -12.16975 -11.99618 -11.95943 -11.63988 -11.28611 -11.25357 -11.08224 -11.00689 -10.93624 -10.81619 -10.50213 -10.36099 -10.28371 -9.91073 -9.64722 -9.54644 -9.32081 -8.86315 -8.81044 -8.09649 -7.51719 -6.54445 -3.96012 1.82063 2.85932 3.07428 3.18206 3.22772 3.47932 3.71792 3.98810 4.06682 4.33242 4.70939 4.82514 4.87687 4.96352 5.08337 5.09108 5.14151 5.23531 5.27229 5.35739 5.43323 5.44602 5.46005 5.66767 5.69362 5.72469 5.73474 5.79832 5.84297 5.94270 5.94898 6.00672 6.06587 6.09192 6.11842 6.15641 6.22957 6.43643 6.46206 6.59774 6.62173 6.73277 7.19875 7.28120 7.42304 7.65087 7.76190 7.91274 8.42465 8.45987 9.03447 9.39218 9.88749 10.61894 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010092 B = 0.003817 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.903074 B = 7333.167515 C = 8811.865371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.117 4.117 4 C -0.161 4.161 5 C -0.105 4.105 6 C 0.562 3.438 7 O -0.553 6.553 8 N -0.700 5.700 9 C 0.157 3.843 10 H 0.088 0.912 11 C -0.123 4.123 12 C 0.039 3.961 13 N -0.509 5.509 14 C 0.041 3.959 15 C 0.405 3.595 16 O -0.595 6.595 17 N -0.553 5.553 18 C -0.303 4.303 19 H 0.103 0.897 20 C 0.026 3.974 21 N -0.897 5.897 22 Si 0.929 3.071 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.269 1.269 26 C 0.000 4.000 27 C 0.103 3.897 28 H 0.070 0.930 29 O -0.562 6.562 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.411 0.589 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.393 0.607 47 H 0.273 0.727 48 H 0.094 0.906 49 H 0.067 0.933 50 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 -5.477 6.751 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C -0.136 4.136 4 C -0.164 4.164 5 C -0.162 4.162 6 C 0.349 3.651 7 O -0.432 6.432 8 N -0.351 5.351 9 C 0.052 3.948 10 H 0.106 0.894 11 C -0.162 4.162 12 C -0.089 4.089 13 N -0.233 5.233 14 C -0.091 4.091 15 C 0.191 3.809 16 O -0.483 6.483 17 N -0.188 5.188 18 C -0.433 4.433 19 H 0.121 0.879 20 C -0.177 4.177 21 N -0.537 5.537 22 Si 0.756 3.244 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.194 1.194 26 C -0.129 4.129 27 C 0.043 3.957 28 H 0.088 0.912 29 O -0.366 6.366 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.141 0.859 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.249 0.751 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.226 0.774 47 H 0.083 0.917 48 H 0.112 0.888 49 H 0.085 0.915 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -11.855 -5.103 7.992 15.180 hybrid contribution 0.979 0.559 -2.060 2.348 sum -10.876 -4.543 5.932 13.196 Atomic orbital electron populations 1.21664 0.94849 1.01701 1.01823 1.20736 0.96284 0.93909 1.03183 1.23333 0.96642 0.97759 0.95899 1.21528 1.01034 0.96595 0.97218 1.20669 1.02077 0.90478 1.02988 1.18400 0.78783 0.80386 0.87551 1.90760 1.60823 1.71579 1.20025 1.46049 1.38630 1.34899 1.15567 1.20931 0.95910 0.87280 0.90723 0.89361 1.21931 0.94956 1.01369 0.97916 1.22254 0.96791 0.92776 0.97043 1.62394 1.06320 1.26972 1.27614 1.22046 0.93803 0.99186 0.94033 1.21032 0.86829 0.86847 0.86196 1.90343 1.18803 1.62725 1.76429 1.42057 1.10148 1.41511 1.25060 1.19701 0.96518 1.22703 1.04389 0.87912 1.25291 0.94856 0.98391 0.99160 1.69603 1.01342 1.44763 1.37997 0.85875 0.78629 0.79979 0.79927 1.20318 1.20823 1.19402 1.23112 0.92560 1.00581 0.96624 1.22052 0.87303 0.93977 0.92387 0.91206 1.86531 1.37597 1.49145 1.63325 0.92628 0.92494 0.92667 0.90474 0.91092 0.85919 0.90576 0.91281 0.91443 0.75118 0.90532 0.90625 0.90902 0.91412 0.89226 0.89305 0.77374 0.91684 0.88812 0.91490 0.77557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.10 -1.26 6.19 -27.88 -0.17 -1.43 16 3 C -0.12 -1.47 9.20 -36.13 -0.33 -1.81 16 4 C -0.16 -2.30 5.74 -102.85 -0.59 -2.90 16 5 C -0.11 -1.34 10.03 36.00 0.36 -0.98 16 6 C 0.56 9.18 5.23 -12.66 -0.07 9.11 16 7 O -0.55 -10.51 16.77 5.27 0.09 -10.42 16 8 N -0.70 -10.76 4.12 -54.83 -0.23 -10.98 16 9 C 0.16 2.24 2.52 -67.77 -0.17 2.07 16 10 H 0.09 1.34 7.59 -51.93 -0.39 0.95 16 11 C -0.12 -1.70 5.76 -26.65 -0.15 -1.85 16 12 C 0.04 0.61 4.95 -3.84 -0.02 0.59 16 13 N -0.51 -7.64 4.86 -236.11 -1.15 -8.79 16 14 C 0.04 0.66 5.86 -4.97 -0.03 0.64 16 15 C 0.41 8.50 7.20 -10.98 -0.08 8.42 16 16 O -0.60 -13.61 11.20 5.55 0.06 -13.55 16 17 N -0.55 -12.96 5.29 -10.96 -0.06 -13.02 16 18 C -0.30 -7.93 9.68 -14.93 -0.14 -8.08 16 19 H 0.10 2.82 7.16 -52.49 -0.38 2.44 16 20 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -23.38 13.05 55.50 0.72 -22.66 16 22 Si 0.93 20.16 29.55 -169.99 -5.02 15.14 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 C 0.00 -0.01 4.44 -3.83 -0.02 -0.02 16 27 C 0.10 1.31 3.36 -26.61 -0.09 1.22 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 O -0.56 -6.86 13.15 -35.23 -0.46 -7.32 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.01 6.32 -51.93 -0.33 0.68 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 38 H 0.07 0.88 8.11 -51.92 -0.42 0.46 16 39 H 0.41 6.78 7.00 -40.82 -0.29 6.49 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.35 5.55 -51.93 -0.29 1.07 16 43 H 0.07 1.00 8.06 -51.93 -0.42 0.59 16 44 H 0.09 1.34 8.06 -51.93 -0.42 0.92 16 45 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.39 8.95 7.90 -40.82 -0.32 8.63 16 47 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 48 H 0.09 1.68 3.86 -51.93 -0.20 1.48 16 49 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 50 H 0.38 3.10 9.08 45.56 0.41 3.52 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -30.10 399.36 -8.50 -38.60 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: -7.24 Total: 22.52 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.23 Total: 4.46 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.71 Total: -55.46 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.31 Total: -31.28 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.10 -8.50 -38.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099720651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.530 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds