Wall clock time and date at job start Sat Apr 11 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46728 * 2 1 4 4 C 1.32995 * 120.00479 * 125.43451 * 3 2 1 5 5 C 1.50697 * 120.00216 * 185.66532 * 4 3 2 6 6 C 1.47107 * 119.99322 * 5.66454 * 4 3 2 7 7 O 1.21608 * 119.99634 * 255.47934 * 6 4 3 8 8 N 1.34778 * 119.99862 * 75.48989 * 6 4 3 9 9 C 1.46497 * 119.99629 * 179.97438 * 8 6 4 10 10 H 1.09003 * 109.57824 * 35.15416 * 9 8 6 11 11 C 1.53123 * 109.52453 * 274.99465 * 9 8 6 12 12 C 1.53033 * 109.30907 * 297.77206 * 11 9 8 13 13 N 1.46843 * 109.52494 * 300.79757 * 12 11 9 14 14 C 1.46900 * 111.00071 * 185.84304 * 13 12 11 15 15 C 1.50707 * 109.46658 * 293.95002 * 14 13 12 16 16 O 1.21287 * 120.00086 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99457 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99588 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00087 * 0.02562 * 18 17 15 20 20 C 1.38957 * 119.99589 * 180.02562 * 18 17 15 21 21 N 1.31404 * 119.99867 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99714 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47035 * 89.99602 * 22 20 18 24 24 H 1.48502 * 109.47271 * 209.99744 * 22 20 18 25 25 H 1.48510 * 109.47350 * 329.99971 * 22 20 18 26 26 C 1.46846 * 111.19826 * 61.74393 * 13 12 11 27 27 C 1.53040 * 109.52202 * 298.26134 * 26 13 12 28 28 H 1.09002 * 109.50326 * 299.23348 * 27 26 13 29 29 O 1.42906 * 109.50341 * 179.12047 * 27 26 13 30 30 H 1.09002 * 109.47066 * 60.00608 * 1 2 3 31 31 H 1.09001 * 109.46415 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47055 * 299.99878 * 1 2 3 33 33 H 1.08994 * 109.47522 * 240.00355 * 2 1 3 34 34 H 1.09002 * 109.47066 * 119.99392 * 2 1 3 35 35 H 1.08000 * 119.99779 * 305.42767 * 3 2 1 36 36 H 1.08994 * 109.47202 * 269.99698 * 5 4 3 37 37 H 1.09001 * 109.47378 * 30.00084 * 5 4 3 38 38 H 1.09007 * 109.47069 * 149.99526 * 5 4 3 39 39 H 0.96994 * 119.99988 * 359.97438 * 8 6 4 40 40 H 1.09002 * 109.50394 * 177.80738 * 11 9 8 41 41 H 1.09000 * 109.49871 * 57.73114 * 11 9 8 42 42 H 1.09000 * 109.46421 * 60.81998 * 12 11 9 43 43 H 1.09000 * 109.46040 * 180.79451 * 12 11 9 44 44 H 1.08997 * 109.47193 * 53.95174 * 14 13 12 45 45 H 1.08996 * 109.47032 * 173.95626 * 14 13 12 46 46 H 0.97000 * 119.99973 * 0.02562 * 17 15 14 47 47 H 0.97002 * 119.99817 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.46207 * 58.27324 * 26 13 12 49 49 H 1.09001 * 109.46450 * 178.25301 * 26 13 12 50 50 H 0.96699 * 113.99712 * 59.99574 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8835 1.8254 0.9384 5 6 3.2866 3.2754 1.0156 6 6 3.4314 0.8572 1.9009 7 8 3.0153 0.8338 3.0434 8 7 4.3947 -0.0035 1.5167 9 6 4.9407 -0.9673 2.4754 10 1 4.1511 -1.2992 3.1496 11 6 6.0600 -0.3061 3.2845 12 6 7.1927 0.1035 2.3405 13 7 7.7045 -1.0835 1.6439 14 6 8.8835 -0.7507 0.8332 15 6 8.4788 0.1747 -0.2854 16 8 7.3223 0.5230 -0.3959 17 7 9.4024 0.6160 -1.1622 18 6 9.0344 1.4582 -2.1795 19 1 8.0046 1.7684 -2.2779 20 6 9.9864 1.9128 -3.0838 21 7 11.2395 1.5358 -2.9636 22 14 9.4850 3.0598 -4.4702 23 1 9.6055 4.4683 -4.0155 24 1 10.3725 2.8397 -5.6403 25 1 8.0781 2.7832 -4.8572 26 6 6.6602 -1.7085 0.8223 27 6 5.5115 -2.1722 1.7210 28 1 5.8826 -2.9066 2.4360 29 8 4.4864 -2.7620 0.9189 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5137 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.7010 2.1107 -0.7621 36 1 4.1709 3.4399 0.4001 37 1 2.4699 3.8994 0.6526 38 1 3.5104 3.5357 2.0502 39 1 4.7264 0.0151 0.6054 40 1 6.4396 -1.0111 4.0242 41 1 5.6703 0.5773 3.7903 42 1 6.8156 0.8191 1.6098 43 1 7.9971 0.5618 2.9158 44 1 9.6283 -0.2597 1.4595 45 1 9.3059 -1.6639 0.4143 46 1 10.3273 0.3377 -1.0735 47 1 11.9042 1.8534 -3.5947 48 1 6.2856 -0.9845 0.0986 49 1 7.0777 -2.5663 0.2950 50 1 4.7785 -3.5307 0.4101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099720651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:02 Heat of formation + Delta-G solvation = -132.978481 kcal Electronic energy + Delta-G solvation = -31649.247737 eV Core-core repulsion = 27482.404666 eV Total energy + Delta-G solvation = -4166.843071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.70517 -40.58801 -39.23031 -37.05846 -36.77145 -35.96736 -35.32611 -33.31652 -33.22036 -32.28822 -30.65514 -28.76670 -27.91376 -26.51936 -24.81727 -24.03053 -23.64817 -22.96994 -21.13875 -20.55345 -20.14039 -19.75425 -18.25676 -17.86389 -17.59444 -16.97098 -16.65658 -16.60331 -16.39153 -16.30375 -15.75542 -15.67627 -15.47838 -15.29874 -14.89393 -14.67109 -14.21876 -14.12900 -13.94106 -13.79042 -13.66510 -13.54994 -13.44729 -13.34296 -13.17982 -12.94562 -12.92941 -12.52130 -12.41643 -12.19400 -12.15542 -12.11904 -12.03612 -11.93755 -11.52340 -11.32948 -10.99763 -10.91282 -10.83583 -10.07491 -9.96540 -9.92402 -8.99558 -8.45181 -5.94038 0.75336 1.35810 1.41119 1.52204 1.60560 2.03702 2.28515 2.30700 2.84330 3.20520 3.22038 3.28722 3.65027 3.72439 3.89058 3.91424 4.08033 4.11155 4.18483 4.36637 4.37342 4.41844 4.43959 4.46436 4.52813 4.56928 4.65239 4.69247 4.69291 4.73086 4.84916 4.88696 4.94075 5.01368 5.03409 5.13524 5.18027 5.25217 5.28812 5.42753 5.43050 5.49041 5.62025 5.87005 6.02953 6.04485 6.47933 6.60108 6.84912 7.12997 7.16651 7.57639 8.11339 8.70159 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010092 B = 0.003817 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.903074 B = 7333.167515 C = 8811.865371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.101 4.101 4 C -0.193 4.193 5 C -0.099 4.099 6 C 0.560 3.440 7 O -0.587 6.587 8 N -0.695 5.695 9 C 0.150 3.850 10 H 0.079 0.921 11 C -0.113 4.113 12 C 0.043 3.957 13 N -0.494 5.494 14 C 0.048 3.952 15 C 0.409 3.591 16 O -0.613 6.613 17 N -0.570 5.570 18 C -0.327 4.327 19 H 0.081 0.919 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.986 3.014 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.272 1.272 26 C 0.002 3.998 27 C 0.116 3.884 28 H 0.093 0.907 29 O -0.572 6.572 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.149 0.851 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.406 0.594 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.395 0.605 47 H 0.276 0.724 48 H 0.062 0.938 49 H 0.081 0.919 50 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.132 -6.390 6.480 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C -0.120 4.120 4 C -0.196 4.196 5 C -0.156 4.156 6 C 0.348 3.652 7 O -0.469 6.469 8 N -0.344 5.344 9 C 0.045 3.955 10 H 0.097 0.903 11 C -0.152 4.152 12 C -0.085 4.085 13 N -0.217 5.217 14 C -0.083 4.083 15 C 0.196 3.804 16 O -0.500 6.500 17 N -0.207 5.207 18 C -0.457 4.457 19 H 0.099 0.901 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.811 3.189 23 H -0.200 1.200 24 H -0.199 1.199 25 H -0.196 1.196 26 C -0.126 4.126 27 C 0.057 3.943 28 H 0.111 0.889 29 O -0.380 6.380 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.167 0.833 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.243 0.757 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.126 0.874 45 H 0.131 0.869 46 H 0.228 0.772 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.100 0.900 50 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.214 -6.048 7.723 15.666 hybrid contribution 0.997 0.755 -1.934 2.303 sum -11.217 -5.293 5.790 13.688 Atomic orbital electron populations 1.21638 0.93023 1.02514 1.02381 1.20759 0.97824 0.93454 1.02151 1.23658 0.94816 0.98311 0.95197 1.21647 1.02771 0.96983 0.98186 1.20643 1.02616 0.90070 1.02314 1.18774 0.78527 0.80493 0.87446 1.90722 1.62031 1.72638 1.21526 1.46078 1.38206 1.34807 1.15349 1.21073 0.95780 0.87873 0.90780 0.90255 1.21843 0.94133 1.01405 0.97813 1.22188 0.97438 0.92314 0.96585 1.62472 1.06162 1.26165 1.26915 1.22151 0.94664 0.99022 0.92510 1.22058 0.86134 0.86012 0.86156 1.90370 1.19780 1.63048 1.76834 1.42127 1.10623 1.42329 1.25578 1.19632 0.95806 1.24221 1.06063 0.90136 1.25966 0.94808 0.99507 1.00883 1.69665 1.01888 1.45705 1.38839 0.85016 0.78138 0.78210 0.77550 1.19961 1.19881 1.19650 1.23090 0.93011 1.00125 0.96418 1.21901 0.86438 0.93712 0.92286 0.88904 1.86504 1.37602 1.50198 1.63651 0.90786 0.91643 0.93331 0.89885 0.93639 0.83346 0.91502 0.88792 0.92452 0.75745 0.88160 0.91887 0.94313 0.90614 0.87388 0.86930 0.77173 0.91435 0.92030 0.90049 0.75393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.89 71.98 0.71 -1.87 16 2 C -0.10 -2.46 6.19 29.85 0.18 -2.28 16 3 C -0.10 -2.45 9.20 24.52 0.23 -2.23 16 4 C -0.19 -5.60 5.74 -18.70 -0.11 -5.70 16 5 C -0.10 -2.55 10.03 71.23 0.71 -1.84 16 6 C 0.56 18.86 5.23 86.57 0.45 19.32 16 7 O -0.59 -23.13 16.77 -4.05 -0.07 -23.20 16 8 N -0.69 -21.85 4.12 -445.63 -1.84 -23.69 16 9 C 0.15 4.23 2.52 45.10 0.11 4.34 16 10 H 0.08 2.41 7.59 -2.39 -0.02 2.39 16 11 C -0.11 -3.05 5.76 30.65 0.18 -2.87 16 12 C 0.04 1.29 4.95 86.33 0.43 1.72 16 13 N -0.49 -13.89 4.86 -900.93 -4.38 -18.27 16 14 C 0.05 1.47 5.86 85.56 0.50 1.97 16 15 C 0.41 17.12 7.20 87.66 0.63 17.75 16 16 O -0.61 -28.47 11.20 -3.05 -0.03 -28.50 16 17 N -0.57 -26.95 5.29 -306.98 -1.62 -28.58 16 18 C -0.33 -17.43 9.68 84.04 0.81 -16.62 16 19 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 21 N -0.92 -48.02 13.05 21.66 0.28 -47.74 16 22 Si 0.99 41.40 29.55 68.60 2.03 43.43 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 C 0.00 0.06 4.44 86.33 0.38 0.44 16 27 C 0.12 2.78 3.36 30.67 0.10 2.88 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 O -0.57 -13.09 13.15 -148.98 -1.96 -15.05 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.31 6.32 -2.39 -0.02 1.29 16 35 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.09 1.88 8.07 -2.39 -0.02 1.86 16 38 H 0.06 1.55 8.11 -2.38 -0.02 1.53 16 39 H 0.41 13.78 7.00 -92.71 -0.65 13.13 16 40 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 1.46 5.55 -2.39 -0.01 1.45 16 43 H 0.08 2.15 8.06 -2.39 -0.02 2.13 16 44 H 0.11 2.97 8.06 -2.39 -0.02 2.95 16 45 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 46 H 0.39 18.04 7.90 -92.71 -0.73 17.31 16 47 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 48 H 0.06 2.19 3.86 -2.38 -0.01 2.18 16 49 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 50 H 0.40 5.64 9.08 -74.06 -0.67 4.97 16 Total: -1.00 -66.42 399.36 -2.86 -69.28 By element: Atomic # 1 Polarization: 58.51 SS G_CDS: -1.07 Total: 57.43 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 5.80 Total: 14.87 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -7.55 Total: -118.27 kcal Atomic # 8 Polarization: -64.69 SS G_CDS: -2.06 Total: -66.75 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -66.42 -2.86 -69.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099720651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.694 kcal (2) G-P(sol) polarization free energy of solvation -66.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds