Wall clock time and date at job start Sat Apr 11 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47148 * 2 1 4 4 C 1.32992 * 119.99629 * 124.09555 * 3 2 1 5 5 C 1.50696 * 120.00179 * 6.24783 * 4 3 2 6 6 C 1.47105 * 119.99643 * 186.24570 * 4 3 2 7 7 O 1.21603 * 120.00109 * 0.02562 * 6 4 3 8 8 N 1.34776 * 119.99630 * 180.02562 * 6 4 3 9 9 C 1.46502 * 119.99577 * 180.02562 * 8 6 4 10 10 H 1.08998 * 109.57469 * 34.84283 * 9 8 6 11 11 C 1.53122 * 109.52254 * 274.68269 * 9 8 6 12 12 C 1.53040 * 109.27811 * 182.44336 * 11 9 8 13 13 N 1.46849 * 109.52375 * 59.18052 * 12 11 9 14 14 C 1.46902 * 110.99954 * 174.16496 * 13 12 11 15 15 C 1.50704 * 109.46648 * 294.20664 * 14 13 12 16 16 O 1.21292 * 120.00046 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99516 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99610 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99906 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00068 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00460 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99619 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46920 * 90.00576 * 22 20 18 24 24 H 1.48503 * 109.46876 * 210.00518 * 22 20 18 25 25 H 1.48496 * 109.47443 * 330.00259 * 22 20 18 26 26 C 1.46851 * 111.19612 * 298.25793 * 13 12 11 27 27 C 1.53040 * 109.52404 * 61.74321 * 26 13 12 28 28 H 1.09000 * 109.49987 * 60.76183 * 27 26 13 29 29 O 1.42899 * 109.50142 * 180.83883 * 27 26 13 30 30 H 1.08999 * 109.47232 * 299.99912 * 1 2 3 31 31 H 1.08999 * 109.47069 * 59.99712 * 1 2 3 32 32 H 1.09005 * 109.46991 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46817 * 239.99746 * 2 1 3 34 34 H 1.08999 * 109.47069 * 120.00287 * 2 1 3 35 35 H 1.07990 * 119.99928 * 304.09867 * 3 2 1 36 36 H 1.09004 * 109.47170 * 268.03839 * 5 4 3 37 37 H 1.08994 * 109.47302 * 28.04572 * 5 4 3 38 38 H 1.09002 * 109.47142 * 148.04510 * 5 4 3 39 39 H 0.97000 * 120.00523 * 359.97438 * 8 6 4 40 40 H 1.08997 * 109.50533 * 62.50190 * 11 9 8 41 41 H 1.08999 * 109.53599 * 302.40015 * 11 9 8 42 42 H 1.08997 * 109.45795 * 299.16470 * 12 11 9 43 43 H 1.08997 * 109.45580 * 179.19150 * 12 11 9 44 44 H 1.09001 * 109.47010 * 54.20570 * 14 13 12 45 45 H 1.08994 * 109.46944 * 174.20834 * 14 13 12 46 46 H 0.96997 * 120.00279 * 359.97438 * 17 15 14 47 47 H 0.96996 * 120.00747 * 179.97438 * 21 20 18 48 48 H 1.09005 * 109.46555 * 301.72675 * 26 13 12 49 49 H 1.08999 * 109.45284 * 181.75390 * 26 13 12 50 50 H 0.96696 * 114.00232 * 299.92168 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8628 1.8325 0.9538 5 6 3.4124 0.8460 1.9517 6 6 3.2447 3.2508 1.0346 7 8 2.8008 4.0468 0.2296 8 7 4.0866 3.6678 2.0009 9 6 4.4666 5.0804 2.0817 10 1 3.6227 5.7031 1.7847 11 6 5.6517 5.3457 1.1491 12 6 6.0828 6.8080 1.2834 13 7 6.4615 7.0822 2.6755 14 6 7.0118 8.4371 2.8143 15 6 8.3121 8.5309 2.0582 16 8 8.7386 7.5640 1.4629 17 7 9.0016 9.6889 2.0445 18 6 10.1843 9.7743 1.3563 19 1 10.5636 8.9137 0.8255 20 6 10.8954 10.9680 1.3426 21 7 12.0287 11.0502 0.6826 22 14 10.2396 12.4564 2.2613 23 1 10.7617 12.4495 3.6516 24 1 10.6802 13.6965 1.5732 25 1 8.7558 12.4065 2.2895 26 6 5.3258 6.8799 3.5843 27 6 4.8721 5.4197 3.5188 28 1 5.6906 4.7701 3.8290 29 8 3.7547 5.2279 4.3886 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.7180 2.1047 -0.7744 36 1 2.7630 0.8142 2.8266 37 1 3.4583 -0.1435 1.4970 38 1 4.4135 1.1540 2.2534 39 1 4.4404 3.0329 2.6433 40 1 5.3559 5.1466 0.1191 41 1 6.4826 4.6949 1.4215 42 1 5.2561 7.4580 0.9971 43 1 6.9356 6.9964 0.6313 44 1 6.3034 9.1602 2.4099 45 1 7.1881 8.6514 3.8683 46 1 8.6607 10.4620 2.5210 47 1 12.5250 11.8835 0.6727 48 1 4.5026 7.5297 3.2872 49 1 5.6290 7.1206 4.6032 50 1 3.9400 5.4264 5.3166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099720652.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:06 Heat of formation + Delta-G solvation = -101.345253 kcal Electronic energy + Delta-G solvation = -29693.245299 eV Core-core repulsion = 25527.773948 eV Total energy + Delta-G solvation = -4165.471351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.41971 -39.25101 -38.13022 -36.41128 -36.12610 -34.86449 -33.92230 -32.48381 -31.71379 -31.07403 -29.70525 -27.47863 -27.24732 -25.03567 -24.10897 -23.22404 -22.57573 -21.09059 -20.25650 -19.39725 -18.65898 -18.35554 -17.40379 -17.36915 -16.55941 -16.14846 -15.55182 -15.34192 -14.99885 -14.90239 -14.65182 -14.50928 -14.26090 -14.06943 -13.93044 -13.63962 -13.37282 -13.23446 -12.98130 -12.96716 -12.70600 -12.60621 -12.53202 -12.18489 -12.10226 -11.99371 -11.67557 -11.51714 -11.33575 -11.21917 -11.18247 -10.85753 -10.61183 -10.58510 -10.31792 -9.99188 -9.89476 -9.55935 -9.34981 -9.06606 -8.60187 -8.19942 -8.03355 -6.32350 -3.83833 1.14739 3.01386 3.02608 3.05525 3.14072 3.16791 3.62485 3.71470 4.04408 4.09229 4.37902 4.55667 4.57954 4.69179 4.75130 4.80720 4.82625 4.90499 4.95829 5.12697 5.19790 5.20158 5.24610 5.30096 5.31706 5.40389 5.49477 5.53801 5.57518 5.58956 5.60777 5.64799 5.73141 5.77225 5.81396 5.89872 5.98212 6.16870 6.22678 6.24596 6.38989 6.46444 7.06981 7.16083 7.41761 7.42163 7.56766 8.13014 8.14421 8.58530 8.93795 9.40920 9.81305 10.80686 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025097 B = 0.001987 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.422292 B =14090.341850 C =14640.100043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.072 4.072 4 C -0.187 4.187 5 C -0.119 4.119 6 C 0.554 3.446 7 O -0.546 6.546 8 N -0.712 5.712 9 C 0.154 3.846 10 H 0.090 0.910 11 C -0.119 4.119 12 C 0.051 3.949 13 N -0.512 5.512 14 C 0.044 3.956 15 C 0.452 3.548 16 O -0.558 6.558 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.027 3.973 27 C 0.103 3.897 28 H 0.072 0.928 29 O -0.563 6.563 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.400 0.600 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.028 0.972 43 H 0.112 0.888 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.042 0.958 49 H 0.081 0.919 50 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.187 -17.765 7.319 28.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.092 4.092 4 C -0.190 4.190 5 C -0.176 4.176 6 C 0.343 3.657 7 O -0.425 6.425 8 N -0.362 5.362 9 C 0.050 3.950 10 H 0.108 0.892 11 C -0.158 4.158 12 C -0.077 4.077 13 N -0.238 5.238 14 C -0.087 4.087 15 C 0.238 3.762 16 O -0.440 6.440 17 N -0.230 5.230 18 C -0.433 4.433 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.102 4.102 27 C 0.043 3.957 28 H 0.090 0.910 29 O -0.367 6.367 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.235 0.765 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.046 0.954 43 H 0.130 0.870 44 H 0.069 0.931 45 H 0.109 0.891 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.099 0.901 50 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -20.943 -18.226 5.856 28.374 hybrid contribution -0.453 1.963 1.375 2.439 sum -21.396 -16.263 7.231 27.831 Atomic orbital electron populations 1.21688 0.94373 1.01946 1.02433 1.20877 0.96621 0.93687 1.03369 1.23583 0.92535 0.97270 0.95796 1.21425 1.03074 0.93598 1.00856 1.20860 1.00782 0.97993 0.97956 1.18368 0.78189 0.88405 0.80774 1.90784 1.54918 1.55801 1.40967 1.45835 1.47916 1.09974 1.32523 1.21064 0.98419 0.82280 0.93287 0.89161 1.21915 0.96853 0.97516 0.99537 1.22302 1.00880 0.94679 0.89805 1.61496 1.29739 1.26070 1.06481 1.21876 0.96119 0.89348 1.01395 1.19600 0.86564 0.84060 0.86010 1.90530 1.69939 1.36413 1.47123 1.42209 1.22055 1.10887 1.47812 1.19426 0.95756 1.00413 1.27740 0.86236 1.25035 0.95837 0.97776 0.97475 1.69614 1.14104 1.27349 1.41000 0.86678 0.78955 0.83236 0.80543 1.19619 1.20187 1.19540 1.22758 0.92942 0.96237 0.98288 1.22018 0.88163 0.95709 0.89815 0.91003 1.86558 1.37562 1.91047 1.21565 0.92446 0.92327 0.92173 0.90268 0.90357 0.85606 0.91059 0.90707 0.91564 0.76466 0.90397 0.90316 0.95379 0.87043 0.93149 0.89125 0.79724 0.91603 0.94020 0.90090 0.77403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.90 37.16 0.37 -0.44 16 2 C -0.11 -0.65 6.03 -27.88 -0.17 -0.81 16 3 C -0.07 -0.64 9.08 -36.13 -0.33 -0.97 16 4 C -0.19 -1.79 5.99 -102.85 -0.62 -2.41 16 5 C -0.12 -0.76 8.73 36.00 0.31 -0.45 16 6 C 0.55 7.15 7.72 -12.66 -0.10 7.05 16 7 O -0.55 -9.12 15.89 5.27 0.08 -9.03 16 8 N -0.71 -8.03 4.94 -54.87 -0.27 -8.30 16 9 C 0.15 1.96 2.20 -67.80 -0.15 1.81 16 10 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 11 C -0.12 -1.69 5.67 -26.65 -0.15 -1.84 16 12 C 0.05 0.82 5.11 -3.83 -0.02 0.80 16 13 N -0.51 -7.84 4.40 -236.10 -1.04 -8.88 16 14 C 0.04 0.71 5.45 -4.97 -0.03 0.69 16 15 C 0.45 10.00 7.46 -10.98 -0.08 9.92 16 16 O -0.56 -14.46 13.90 5.55 0.08 -14.38 16 17 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 18 C -0.30 -8.51 10.16 -14.93 -0.15 -8.67 16 19 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.58 13.96 55.50 0.77 -24.80 16 22 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 26 C 0.03 0.31 5.08 -3.83 -0.02 0.29 16 27 C 0.10 1.10 3.13 -26.65 -0.08 1.02 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 O -0.56 -5.38 13.24 -35.23 -0.47 -5.85 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.39 5.61 -51.93 -0.29 0.10 16 35 H 0.13 1.29 7.51 -52.49 -0.39 0.89 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.38 6.27 -51.93 -0.33 0.06 16 38 H 0.07 0.39 6.80 -51.93 -0.35 0.03 16 39 H 0.40 3.54 6.75 -40.82 -0.28 3.27 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.11 2.18 5.78 -51.93 -0.30 1.88 16 44 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 45 H 0.09 1.25 7.99 -51.93 -0.41 0.84 16 46 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.78 8.01 -51.93 -0.42 0.37 16 50 H 0.38 2.00 9.08 45.56 0.41 2.41 16 LS Contribution 399.47 15.07 6.02 6.02 Total: -1.00 -35.15 399.47 -8.09 -43.24 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -7.19 Total: 14.33 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.31 Total: 7.04 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.59 Total: -55.85 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.31 Total: -29.26 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.15 -8.09 -43.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099720652.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.106 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds