Wall clock time and date at job start Sat Apr 11 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47148 * 2 1 4 4 C 1.32992 * 119.99629 * 124.09555 * 3 2 1 5 5 C 1.50696 * 120.00179 * 6.24783 * 4 3 2 6 6 C 1.47105 * 119.99643 * 186.24570 * 4 3 2 7 7 O 1.21603 * 120.00109 * 0.02562 * 6 4 3 8 8 N 1.34776 * 119.99630 * 180.02562 * 6 4 3 9 9 C 1.46502 * 119.99577 * 180.02562 * 8 6 4 10 10 H 1.08998 * 109.57469 * 34.84283 * 9 8 6 11 11 C 1.53122 * 109.52254 * 274.68269 * 9 8 6 12 12 C 1.53040 * 109.27811 * 182.44336 * 11 9 8 13 13 N 1.46849 * 109.52375 * 59.18052 * 12 11 9 14 14 C 1.46902 * 110.99954 * 174.16496 * 13 12 11 15 15 C 1.50704 * 109.46648 * 294.20664 * 14 13 12 16 16 O 1.21292 * 120.00046 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99516 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99610 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99906 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00068 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00460 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99619 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46920 * 90.00576 * 22 20 18 24 24 H 1.48503 * 109.46876 * 210.00518 * 22 20 18 25 25 H 1.48496 * 109.47443 * 330.00259 * 22 20 18 26 26 C 1.46851 * 111.19612 * 298.25793 * 13 12 11 27 27 C 1.53040 * 109.52404 * 61.74321 * 26 13 12 28 28 H 1.09000 * 109.49987 * 60.76183 * 27 26 13 29 29 O 1.42899 * 109.50142 * 180.83883 * 27 26 13 30 30 H 1.08999 * 109.47232 * 299.99912 * 1 2 3 31 31 H 1.08999 * 109.47069 * 59.99712 * 1 2 3 32 32 H 1.09005 * 109.46991 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46817 * 239.99746 * 2 1 3 34 34 H 1.08999 * 109.47069 * 120.00287 * 2 1 3 35 35 H 1.07990 * 119.99928 * 304.09867 * 3 2 1 36 36 H 1.09004 * 109.47170 * 268.03839 * 5 4 3 37 37 H 1.08994 * 109.47302 * 28.04572 * 5 4 3 38 38 H 1.09002 * 109.47142 * 148.04510 * 5 4 3 39 39 H 0.97000 * 120.00523 * 359.97438 * 8 6 4 40 40 H 1.08997 * 109.50533 * 62.50190 * 11 9 8 41 41 H 1.08999 * 109.53599 * 302.40015 * 11 9 8 42 42 H 1.08997 * 109.45795 * 299.16470 * 12 11 9 43 43 H 1.08997 * 109.45580 * 179.19150 * 12 11 9 44 44 H 1.09001 * 109.47010 * 54.20570 * 14 13 12 45 45 H 1.08994 * 109.46944 * 174.20834 * 14 13 12 46 46 H 0.96997 * 120.00279 * 359.97438 * 17 15 14 47 47 H 0.96996 * 120.00747 * 179.97438 * 21 20 18 48 48 H 1.09005 * 109.46555 * 301.72675 * 26 13 12 49 49 H 1.08999 * 109.45284 * 181.75390 * 26 13 12 50 50 H 0.96696 * 114.00232 * 299.92168 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8628 1.8325 0.9538 5 6 3.4124 0.8460 1.9517 6 6 3.2447 3.2508 1.0346 7 8 2.8008 4.0468 0.2296 8 7 4.0866 3.6678 2.0009 9 6 4.4666 5.0804 2.0817 10 1 3.6227 5.7031 1.7847 11 6 5.6517 5.3457 1.1491 12 6 6.0828 6.8080 1.2834 13 7 6.4615 7.0822 2.6755 14 6 7.0118 8.4371 2.8143 15 6 8.3121 8.5309 2.0582 16 8 8.7386 7.5640 1.4629 17 7 9.0016 9.6889 2.0445 18 6 10.1843 9.7743 1.3563 19 1 10.5636 8.9137 0.8255 20 6 10.8954 10.9680 1.3426 21 7 12.0287 11.0502 0.6826 22 14 10.2396 12.4564 2.2613 23 1 10.7617 12.4495 3.6516 24 1 10.6802 13.6965 1.5732 25 1 8.7558 12.4065 2.2895 26 6 5.3258 6.8799 3.5843 27 6 4.8721 5.4197 3.5188 28 1 5.6906 4.7701 3.8290 29 8 3.7547 5.2279 4.3886 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.7180 2.1047 -0.7744 36 1 2.7630 0.8142 2.8266 37 1 3.4583 -0.1435 1.4970 38 1 4.4135 1.1540 2.2534 39 1 4.4404 3.0329 2.6433 40 1 5.3559 5.1466 0.1191 41 1 6.4826 4.6949 1.4215 42 1 5.2561 7.4580 0.9971 43 1 6.9356 6.9964 0.6313 44 1 6.3034 9.1602 2.4099 45 1 7.1881 8.6514 3.8683 46 1 8.6607 10.4620 2.5210 47 1 12.5250 11.8835 0.6727 48 1 4.5026 7.5297 3.2872 49 1 5.6290 7.1206 4.6032 50 1 3.9400 5.4264 5.3166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099720652.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:05 Heat of formation + Delta-G solvation = -131.639590 kcal Electronic energy + Delta-G solvation = -29694.558960 eV Core-core repulsion = 25527.773948 eV Total energy + Delta-G solvation = -4166.785012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.46001 -40.57754 -39.53312 -37.19786 -37.08647 -36.01786 -35.78034 -33.77467 -33.25879 -32.02701 -30.72857 -28.83566 -27.86216 -26.47706 -25.22157 -24.25040 -23.68089 -21.97126 -21.34498 -21.23598 -20.22089 -19.48761 -18.28379 -18.17397 -17.72689 -17.58283 -16.83810 -16.52738 -16.45704 -16.01862 -15.74806 -15.58803 -15.21742 -15.15372 -15.06133 -14.83162 -14.69838 -14.33474 -14.05427 -14.00467 -13.90393 -13.66796 -13.49706 -13.30896 -13.00684 -12.95975 -12.71966 -12.62561 -12.50679 -12.40641 -12.22658 -12.14056 -11.97655 -11.70104 -11.60340 -11.45847 -11.14441 -10.89249 -10.37366 -10.25348 -10.18988 -9.88408 -9.31527 -8.40314 -6.00908 0.35812 1.30563 1.35883 1.44645 1.96859 2.11219 2.23465 2.23674 2.47873 3.04843 3.15108 3.23489 3.61646 3.71007 3.88634 3.93771 3.94658 4.05635 4.15556 4.17935 4.24441 4.28105 4.36519 4.41382 4.44138 4.46478 4.59640 4.66634 4.67040 4.74093 4.76252 4.85404 4.90021 4.99744 5.05773 5.07368 5.12711 5.15755 5.33435 5.39915 5.53551 5.54676 5.60724 5.83833 5.97129 6.07960 6.52356 6.60698 6.86668 6.89781 7.19482 7.41165 7.98503 8.77306 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025097 B = 0.001987 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.422292 B =14090.341850 C =14640.100043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.069 4.069 4 C -0.199 4.199 5 C -0.115 4.115 6 C 0.544 3.456 7 O -0.595 6.595 8 N -0.701 5.701 9 C 0.158 3.842 10 H 0.067 0.933 11 C -0.109 4.109 12 C 0.057 3.943 13 N -0.526 5.526 14 C 0.054 3.946 15 C 0.451 3.549 16 O -0.603 6.603 17 N -0.592 5.592 18 C -0.326 4.326 19 H 0.055 0.945 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.232 1.232 26 C 0.029 3.971 27 C 0.116 3.884 28 H 0.082 0.918 29 O -0.568 6.568 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.414 0.586 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.032 0.968 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.130 0.870 46 H 0.389 0.611 47 H 0.278 0.722 48 H 0.045 0.955 49 H 0.114 0.886 50 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.662 -17.890 10.940 31.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C -0.089 4.089 4 C -0.202 4.202 5 C -0.171 4.171 6 C 0.335 3.665 7 O -0.477 6.477 8 N -0.351 5.351 9 C 0.052 3.948 10 H 0.085 0.915 11 C -0.148 4.148 12 C -0.072 4.072 13 N -0.252 5.252 14 C -0.076 4.076 15 C 0.239 3.761 16 O -0.487 6.487 17 N -0.234 5.234 18 C -0.455 4.455 19 H 0.073 0.927 20 C -0.214 4.214 21 N -0.576 5.576 22 Si 0.785 3.215 23 H -0.180 1.180 24 H -0.203 1.203 25 H -0.156 1.156 26 C -0.100 4.100 27 C 0.056 3.944 28 H 0.100 0.900 29 O -0.376 6.376 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.252 0.748 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.148 0.852 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.063 0.937 49 H 0.132 0.868 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -23.436 -18.387 9.541 31.279 hybrid contribution 0.307 1.867 0.155 1.899 sum -23.129 -16.519 9.696 30.031 Atomic orbital electron populations 1.21700 0.94007 1.02883 1.01870 1.20932 0.96799 0.91586 1.04715 1.23765 0.91806 0.98634 0.94690 1.21530 1.03911 0.92326 1.02453 1.20907 1.01023 0.97694 0.97494 1.19034 0.77714 0.89644 0.80156 1.90754 1.56819 1.57384 1.42791 1.45736 1.47251 1.09742 1.32378 1.20876 0.96477 0.82779 0.94624 0.91508 1.21747 0.97425 0.96434 0.99203 1.22081 0.99057 0.95808 0.90235 1.61424 1.31834 1.25741 1.06207 1.21841 0.92702 0.90599 1.02498 1.20863 0.87883 0.82718 0.84684 1.90524 1.71508 1.38039 1.48659 1.42030 1.20970 1.12278 1.48128 1.18992 0.98245 0.99204 1.29098 0.92651 1.26104 0.95629 1.01531 0.98146 1.69801 1.16050 1.28809 1.42952 0.85370 0.80376 0.76883 0.78913 1.17953 1.20274 1.15560 1.22885 0.91581 0.96722 0.98772 1.21759 0.88585 0.95481 0.88569 0.90012 1.86529 1.36905 1.91018 1.23140 0.93030 0.92955 0.90446 0.89126 0.88660 0.87912 0.89808 0.88979 0.91033 0.74797 0.92188 0.90760 0.95011 0.91324 0.90681 0.85173 0.77528 0.91215 0.93709 0.86832 0.74822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.90 71.98 0.71 -0.69 16 2 C -0.10 -1.04 6.03 29.85 0.18 -0.86 16 3 C -0.07 -1.21 9.08 24.52 0.22 -0.98 16 4 C -0.20 -3.70 5.99 -18.70 -0.11 -3.82 16 5 C -0.11 -1.19 8.73 71.23 0.62 -0.57 16 6 C 0.54 14.30 7.72 86.57 0.67 14.96 16 7 O -0.59 -20.98 15.89 -4.04 -0.06 -21.05 16 8 N -0.70 -15.42 4.94 -445.75 -2.20 -17.62 16 9 C 0.16 3.94 2.20 45.07 0.10 4.04 16 10 H 0.07 2.02 7.58 -2.39 -0.02 2.00 16 11 C -0.11 -3.21 5.67 30.65 0.17 -3.03 16 12 C 0.06 1.86 5.11 86.33 0.44 2.30 16 13 N -0.53 -15.17 4.40 -900.90 -3.96 -19.13 16 14 C 0.05 1.61 5.45 85.56 0.47 2.08 16 15 C 0.45 19.97 7.46 87.66 0.65 20.63 16 16 O -0.60 -32.76 13.90 -3.07 -0.04 -32.80 16 17 N -0.59 -27.56 5.09 -306.98 -1.56 -29.12 16 18 C -0.33 -19.02 10.16 84.04 0.85 -18.17 16 19 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 20 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 21 N -0.94 -56.48 13.96 21.66 0.30 -56.18 16 22 Si 0.96 38.60 27.74 68.60 1.90 40.50 16 23 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.23 -7.81 6.52 99.48 0.65 -7.17 16 26 C 0.03 0.56 5.08 86.33 0.44 1.00 16 27 C 0.12 2.18 3.13 30.65 0.10 2.28 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 O -0.57 -8.87 13.24 -148.98 -1.97 -10.84 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.66 5.61 -2.39 -0.01 0.65 16 35 H 0.10 2.25 7.51 -2.92 -0.02 2.23 16 36 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.09 0.65 6.27 -2.39 -0.01 0.64 16 38 H 0.07 0.66 6.80 -2.39 -0.02 0.65 16 39 H 0.41 6.65 6.75 -92.71 -0.63 6.03 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 2.85 5.78 -2.39 -0.01 2.84 16 44 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 45 H 0.13 2.92 7.99 -2.39 -0.02 2.90 16 46 H 0.39 14.92 5.76 -92.71 -0.53 14.38 16 47 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 48 H 0.04 0.89 8.14 -2.38 -0.02 0.88 16 49 H 0.11 1.56 8.01 -2.39 -0.02 1.54 16 50 H 0.40 2.41 9.08 -74.06 -0.67 1.74 16 Total: -1.00 -85.17 399.47 -2.53 -87.70 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -0.91 Total: 39.77 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 5.98 Total: 18.77 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -7.42 Total: -122.05 kcal Atomic # 8 Polarization: -62.61 SS G_CDS: -2.08 Total: -64.69 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.50 kcal Total: -85.17 -2.53 -87.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099720652.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.936 kcal (2) G-P(sol) polarization free energy of solvation -85.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds