Wall clock time and date at job start Sat Apr 11 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50709 * 109.47022 * 2 1 4 4 C 1.32990 * 119.99867 * 124.09490 * 3 2 1 5 5 C 1.50698 * 120.00221 * 6.25192 * 4 3 2 6 6 C 1.47106 * 119.99701 * 186.24940 * 4 3 2 7 7 O 1.21620 * 119.99794 * 359.97438 * 6 4 3 8 8 N 1.34772 * 120.00197 * 180.02562 * 6 4 3 9 9 C 1.46494 * 120.00512 * 180.02562 * 8 6 4 10 10 H 1.09006 * 109.57527 * 35.14666 * 9 8 6 11 11 C 1.53129 * 109.51779 * 274.99565 * 9 8 6 12 12 C 1.53029 * 109.27736 * 297.74333 * 11 9 8 13 13 N 1.46848 * 109.51794 * 300.82813 * 12 11 9 14 14 C 1.46896 * 110.99952 * 185.83230 * 13 12 11 15 15 C 1.50700 * 109.47259 * 66.04532 * 14 13 12 16 16 O 1.21286 * 119.99948 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00136 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00291 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99622 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00453 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00252 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99758 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47439 * 89.99719 * 22 20 18 24 24 H 1.48501 * 109.46774 * 209.99740 * 22 20 18 25 25 H 1.48501 * 109.47148 * 329.99257 * 22 20 18 26 26 C 1.46823 * 111.20728 * 61.74797 * 13 12 11 27 27 C 1.53042 * 109.51848 * 298.24986 * 26 13 12 28 28 H 1.09000 * 109.53105 * 299.22255 * 27 26 13 29 29 O 1.42900 * 109.50480 * 179.12304 * 27 26 13 30 30 H 1.09000 * 109.47201 * 60.00197 * 1 2 3 31 31 H 1.09004 * 109.46582 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47463 * 299.99691 * 1 2 3 33 33 H 1.08997 * 109.47463 * 240.00309 * 2 1 3 34 34 H 1.08995 * 109.47507 * 119.99420 * 2 1 3 35 35 H 1.08004 * 119.99686 * 304.10121 * 3 2 1 36 36 H 1.09003 * 109.46665 * 268.04678 * 5 4 3 37 37 H 1.08994 * 109.47048 * 28.04067 * 5 4 3 38 38 H 1.08998 * 109.46869 * 148.04813 * 5 4 3 39 39 H 0.97002 * 119.99925 * 359.97438 * 8 6 4 40 40 H 1.08999 * 109.50245 * 177.80570 * 11 9 8 41 41 H 1.08996 * 109.53370 * 57.70835 * 11 9 8 42 42 H 1.09003 * 109.45935 * 60.83893 * 12 11 9 43 43 H 1.08998 * 109.46643 * 180.81450 * 12 11 9 44 44 H 1.09002 * 109.47213 * 186.04925 * 14 13 12 45 45 H 1.08998 * 109.47466 * 306.04615 * 14 13 12 46 46 H 0.96999 * 120.00170 * 0.02562 * 17 15 14 47 47 H 0.97001 * 120.00137 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.46582 * 178.23763 * 26 13 12 49 49 H 1.09001 * 109.46247 * 58.25878 * 26 13 12 50 50 H 0.96698 * 114.00093 * 60.19209 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8627 1.8326 0.9538 5 6 3.4124 0.8462 1.9517 6 6 3.2445 3.2509 1.0346 7 8 2.8012 4.0469 0.2289 8 7 4.0864 3.6682 2.0008 9 6 4.4662 5.0807 2.0817 10 1 3.6206 5.7036 1.7898 11 6 5.6464 5.3477 1.1432 12 6 6.8491 4.5161 1.5947 13 7 7.2051 4.8765 2.9730 14 6 8.4392 4.1990 3.3922 15 6 9.5970 4.7140 2.5766 16 8 9.4123 5.5623 1.7297 17 7 10.8378 4.2326 2.7888 18 6 11.8912 4.7014 2.0472 19 1 11.7268 5.4569 1.2930 20 6 13.1704 4.2048 2.2656 21 7 14.1800 4.6539 1.5543 22 14 13.4547 2.8977 3.5695 23 1 13.3045 1.5512 2.9617 24 1 14.8252 3.0408 4.1232 25 1 12.4605 3.0621 4.6603 26 6 6.1042 4.5846 3.8996 27 6 4.8792 5.4183 3.5169 28 1 5.1238 6.4783 3.5855 29 8 3.8015 5.1189 4.4064 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.7179 2.1048 -0.7745 36 1 2.7629 0.8142 2.8265 37 1 3.4583 -0.1433 1.4969 38 1 4.4135 1.1543 2.2534 39 1 4.4402 3.0333 2.6432 40 1 5.9037 6.4064 1.1743 41 1 5.3729 5.0694 0.1255 42 1 6.5955 3.4569 1.5502 43 1 7.6954 4.7148 0.9372 44 1 8.6220 4.3975 4.4483 45 1 8.3348 3.1251 3.2373 46 1 10.9856 3.5544 3.4664 47 1 15.0729 4.3069 1.7066 48 1 6.4094 4.8330 4.9161 49 1 5.8541 3.5251 3.8441 50 1 3.9936 5.3085 5.3349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099720653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:10 Heat of formation + Delta-G solvation = -98.625676 kcal Electronic energy + Delta-G solvation = -30318.133401 eV Core-core repulsion = 26152.779980 eV Total energy + Delta-G solvation = -4165.353421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.60752 -39.17500 -38.15770 -36.38090 -36.13214 -34.68605 -33.90999 -32.48609 -31.72132 -31.01079 -29.72979 -27.60411 -27.26198 -24.95332 -24.32524 -23.17371 -22.63743 -21.70552 -19.43044 -19.25578 -18.90077 -18.37425 -17.39884 -17.37071 -16.29071 -16.10417 -15.66715 -15.37643 -15.12326 -15.01332 -14.73472 -14.54676 -14.22024 -14.16474 -13.89643 -13.61773 -13.35037 -13.20443 -12.97221 -12.85101 -12.77123 -12.58931 -12.51597 -12.30361 -12.10978 -12.06267 -11.65058 -11.52319 -11.34566 -11.26591 -11.16969 -10.88078 -10.63103 -10.54668 -10.22993 -10.00315 -9.91165 -9.57453 -9.33192 -9.06688 -8.60438 -8.22071 -8.05388 -6.34056 -3.85638 1.17071 2.98802 3.03135 3.07200 3.11982 3.19097 3.61826 3.68956 4.02756 4.07101 4.40387 4.56744 4.58223 4.67260 4.71323 4.73481 4.82999 4.92489 4.96664 5.15371 5.17274 5.18183 5.25618 5.28107 5.33529 5.38792 5.47893 5.51562 5.56523 5.59743 5.61036 5.66417 5.68442 5.78669 5.84449 5.88502 5.91837 6.19108 6.21849 6.25086 6.39946 6.46947 7.04458 7.14296 7.40825 7.43478 7.54803 8.11146 8.16271 8.56517 8.92017 9.38883 9.79183 10.78963 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.002479 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.821675 B =11291.689924 C =12118.266015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.072 4.072 4 C -0.187 4.187 5 C -0.119 4.119 6 C 0.555 3.445 7 O -0.547 6.547 8 N -0.709 5.709 9 C 0.154 3.846 10 H 0.094 0.906 11 C -0.122 4.122 12 C 0.052 3.948 13 N -0.510 5.510 14 C 0.045 3.955 15 C 0.451 3.549 16 O -0.557 6.557 17 N -0.590 5.590 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.880 5.880 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.270 1.270 26 C 0.024 3.976 27 C 0.101 3.899 28 H 0.083 0.917 29 O -0.562 6.562 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.398 0.602 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.024 0.976 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.080 0.920 49 H 0.034 0.966 50 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.847 -9.959 6.221 26.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.091 4.091 4 C -0.190 4.190 5 C -0.176 4.176 6 C 0.343 3.657 7 O -0.426 6.426 8 N -0.361 5.361 9 C 0.049 3.951 10 H 0.112 0.888 11 C -0.161 4.161 12 C -0.076 4.076 13 N -0.236 5.236 14 C -0.087 4.087 15 C 0.237 3.763 16 O -0.439 6.439 17 N -0.230 5.230 18 C -0.433 4.433 19 H 0.138 0.862 20 C -0.162 4.162 21 N -0.520 5.520 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.105 4.105 27 C 0.041 3.959 28 H 0.101 0.899 29 O -0.367 6.367 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.234 0.766 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.202 0.798 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.052 0.948 50 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -24.247 -8.468 4.493 26.073 hybrid contribution 0.936 -2.032 1.965 2.978 sum -23.311 -10.500 6.458 26.370 Atomic orbital electron populations 1.21684 0.94366 1.01942 1.02404 1.20880 0.96618 0.93713 1.03392 1.23575 0.92550 0.97250 0.95745 1.21424 1.03053 0.93654 1.00849 1.20852 1.00623 0.98078 0.98002 1.18353 0.78178 0.88378 0.80790 1.90777 1.55075 1.55794 1.40964 1.45876 1.47718 1.10082 1.32411 1.21043 0.98331 0.82490 0.93214 0.88815 1.21932 0.93100 1.02252 0.98801 1.22286 0.99368 0.95871 0.90026 1.61450 1.01464 1.58576 1.02063 1.21876 0.90337 0.96281 1.00194 1.19592 0.83334 0.86148 0.87225 1.90537 1.83660 1.33710 1.35972 1.42210 1.07355 1.38003 1.35407 1.19421 0.84711 1.22266 1.16897 0.86234 1.25044 0.95307 0.98068 0.97781 1.69619 1.00044 1.42624 1.39733 0.86674 0.78744 0.82297 0.81668 1.19683 1.20161 1.19529 1.22804 0.92147 0.97919 0.97631 1.22064 0.85410 0.99313 0.89071 0.89943 1.86555 1.39835 1.89503 1.20783 0.92329 0.92181 0.92455 0.90251 0.90377 0.85580 0.91053 0.90654 0.91844 0.76553 0.89457 0.90331 0.95795 0.87380 0.89179 0.93351 0.79766 0.91592 0.90191 0.94830 0.77402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.11 -0.71 6.03 -27.88 -0.17 -0.87 16 3 C -0.07 -0.66 9.08 -36.12 -0.33 -0.99 16 4 C -0.19 -1.90 5.99 -102.85 -0.62 -2.52 16 5 C -0.12 -0.87 8.73 36.00 0.31 -0.56 16 6 C 0.55 7.31 7.72 -12.66 -0.10 7.21 16 7 O -0.55 -9.07 15.90 5.26 0.08 -8.99 16 8 N -0.71 -8.25 4.12 -54.87 -0.23 -8.48 16 9 C 0.15 1.91 2.51 -67.81 -0.17 1.74 16 10 H 0.09 1.29 7.59 -51.93 -0.39 0.90 16 11 C -0.12 -1.70 5.76 -26.65 -0.15 -1.85 16 12 C 0.05 0.79 4.96 -3.84 -0.02 0.77 16 13 N -0.51 -7.47 4.39 -236.14 -1.04 -8.51 16 14 C 0.04 0.70 5.45 -4.98 -0.03 0.67 16 15 C 0.45 9.83 7.46 -10.99 -0.08 9.75 16 16 O -0.56 -14.32 13.92 5.55 0.08 -14.24 16 17 N -0.59 -13.63 5.09 -10.96 -0.06 -13.68 16 18 C -0.30 -8.43 10.16 -14.94 -0.15 -8.58 16 19 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 20 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 21 N -0.88 -25.43 13.96 55.50 0.77 -24.65 16 22 Si 0.88 18.97 27.74 -169.99 -4.71 14.26 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 26 C 0.02 0.26 4.92 -3.84 -0.02 0.24 16 27 C 0.10 1.06 3.36 -26.65 -0.09 0.97 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 O -0.56 -5.24 13.14 -35.23 -0.46 -5.70 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.44 5.61 -51.93 -0.29 0.15 16 35 H 0.13 1.32 7.51 -52.48 -0.39 0.93 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.46 6.27 -51.93 -0.33 0.13 16 38 H 0.06 0.46 6.80 -51.93 -0.35 0.10 16 39 H 0.40 4.00 5.16 -40.82 -0.21 3.79 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.02 0.34 7.69 -51.93 -0.40 -0.06 16 43 H 0.11 2.07 5.80 -51.93 -0.30 1.77 16 44 H 0.09 1.21 7.98 -51.93 -0.41 0.80 16 45 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 46 H 0.37 7.47 5.76 -40.82 -0.24 7.23 16 47 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.08 0.73 8.01 -51.93 -0.42 0.31 16 49 H 0.03 0.33 6.64 -51.93 -0.34 -0.01 16 50 H 0.38 1.93 9.08 45.56 0.41 2.35 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -34.60 395.35 -7.96 -42.56 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -7.02 Total: 14.97 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.34 Total: 6.50 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.54 Total: -55.32 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.30 Total: -28.93 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.60 -7.96 -42.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099720653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.061 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds