Wall clock time and date at job start Sat Apr 11 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50709 * 109.47022 * 2 1 4 4 C 1.32990 * 119.99867 * 124.09490 * 3 2 1 5 5 C 1.50698 * 120.00221 * 6.25192 * 4 3 2 6 6 C 1.47106 * 119.99701 * 186.24940 * 4 3 2 7 7 O 1.21620 * 119.99794 * 359.97438 * 6 4 3 8 8 N 1.34772 * 120.00197 * 180.02562 * 6 4 3 9 9 C 1.46494 * 120.00512 * 180.02562 * 8 6 4 10 10 H 1.09006 * 109.57527 * 35.14666 * 9 8 6 11 11 C 1.53129 * 109.51779 * 274.99565 * 9 8 6 12 12 C 1.53029 * 109.27736 * 297.74333 * 11 9 8 13 13 N 1.46848 * 109.51794 * 300.82813 * 12 11 9 14 14 C 1.46896 * 110.99952 * 185.83230 * 13 12 11 15 15 C 1.50700 * 109.47259 * 66.04532 * 14 13 12 16 16 O 1.21286 * 119.99948 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00136 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00291 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99622 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00453 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00252 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99758 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47439 * 89.99719 * 22 20 18 24 24 H 1.48501 * 109.46774 * 209.99740 * 22 20 18 25 25 H 1.48501 * 109.47148 * 329.99257 * 22 20 18 26 26 C 1.46823 * 111.20728 * 61.74797 * 13 12 11 27 27 C 1.53042 * 109.51848 * 298.24986 * 26 13 12 28 28 H 1.09000 * 109.53105 * 299.22255 * 27 26 13 29 29 O 1.42900 * 109.50480 * 179.12304 * 27 26 13 30 30 H 1.09000 * 109.47201 * 60.00197 * 1 2 3 31 31 H 1.09004 * 109.46582 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47463 * 299.99691 * 1 2 3 33 33 H 1.08997 * 109.47463 * 240.00309 * 2 1 3 34 34 H 1.08995 * 109.47507 * 119.99420 * 2 1 3 35 35 H 1.08004 * 119.99686 * 304.10121 * 3 2 1 36 36 H 1.09003 * 109.46665 * 268.04678 * 5 4 3 37 37 H 1.08994 * 109.47048 * 28.04067 * 5 4 3 38 38 H 1.08998 * 109.46869 * 148.04813 * 5 4 3 39 39 H 0.97002 * 119.99925 * 359.97438 * 8 6 4 40 40 H 1.08999 * 109.50245 * 177.80570 * 11 9 8 41 41 H 1.08996 * 109.53370 * 57.70835 * 11 9 8 42 42 H 1.09003 * 109.45935 * 60.83893 * 12 11 9 43 43 H 1.08998 * 109.46643 * 180.81450 * 12 11 9 44 44 H 1.09002 * 109.47213 * 186.04925 * 14 13 12 45 45 H 1.08998 * 109.47466 * 306.04615 * 14 13 12 46 46 H 0.96999 * 120.00170 * 0.02562 * 17 15 14 47 47 H 0.97001 * 120.00137 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.46582 * 178.23763 * 26 13 12 49 49 H 1.09001 * 109.46247 * 58.25878 * 26 13 12 50 50 H 0.96698 * 114.00093 * 60.19209 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8627 1.8326 0.9538 5 6 3.4124 0.8462 1.9517 6 6 3.2445 3.2509 1.0346 7 8 2.8012 4.0469 0.2289 8 7 4.0864 3.6682 2.0008 9 6 4.4662 5.0807 2.0817 10 1 3.6206 5.7036 1.7898 11 6 5.6464 5.3477 1.1432 12 6 6.8491 4.5161 1.5947 13 7 7.2051 4.8765 2.9730 14 6 8.4392 4.1990 3.3922 15 6 9.5970 4.7140 2.5766 16 8 9.4123 5.5623 1.7297 17 7 10.8378 4.2326 2.7888 18 6 11.8912 4.7014 2.0472 19 1 11.7268 5.4569 1.2930 20 6 13.1704 4.2048 2.2656 21 7 14.1800 4.6539 1.5543 22 14 13.4547 2.8977 3.5695 23 1 13.3045 1.5512 2.9617 24 1 14.8252 3.0408 4.1232 25 1 12.4605 3.0621 4.6603 26 6 6.1042 4.5846 3.8996 27 6 4.8792 5.4183 3.5169 28 1 5.1238 6.4783 3.5855 29 8 3.8015 5.1189 4.4064 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.7179 2.1048 -0.7745 36 1 2.7629 0.8142 2.8265 37 1 3.4583 -0.1433 1.4969 38 1 4.4135 1.1543 2.2534 39 1 4.4402 3.0333 2.6432 40 1 5.9037 6.4064 1.1743 41 1 5.3729 5.0694 0.1255 42 1 6.5955 3.4569 1.5502 43 1 7.6954 4.7148 0.9372 44 1 8.6220 4.3975 4.4483 45 1 8.3348 3.1251 3.2373 46 1 10.9856 3.5544 3.4664 47 1 15.0729 4.3069 1.7066 48 1 6.4094 4.8330 4.9161 49 1 5.8541 3.5251 3.8441 50 1 3.9936 5.3085 5.3349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099720653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:08 Heat of formation + Delta-G solvation = -128.054667 kcal Electronic energy + Delta-G solvation = -30319.409538 eV Core-core repulsion = 26152.779980 eV Total energy + Delta-G solvation = -4166.629558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.63866 -40.49532 -39.52086 -37.14185 -37.08837 -36.00148 -35.60044 -33.75931 -33.25783 -31.93994 -30.70560 -28.95816 -27.88278 -26.45647 -25.31622 -24.17680 -23.83398 -22.52335 -21.25766 -20.34180 -20.17264 -19.71840 -18.24347 -18.18861 -17.77738 -17.16222 -16.85871 -16.63055 -16.33454 -16.33212 -15.81087 -15.45071 -15.40901 -15.12903 -15.02237 -14.88854 -14.59765 -14.30134 -14.06029 -13.91370 -13.85821 -13.67914 -13.50818 -13.37454 -13.02152 -12.96709 -12.71384 -12.61325 -12.48945 -12.40770 -12.22807 -12.15007 -11.96966 -11.69262 -11.49504 -11.43759 -11.10384 -10.89741 -10.38275 -10.24139 -10.17097 -9.88469 -9.24501 -8.39497 -6.00255 0.36068 1.30795 1.36844 1.45795 1.98589 2.14372 2.24481 2.24701 2.51069 3.07634 3.16611 3.23733 3.64363 3.70740 3.76828 3.93175 3.99717 4.12297 4.15156 4.18575 4.25644 4.26818 4.35326 4.43511 4.44693 4.52486 4.56463 4.65733 4.72268 4.73637 4.78342 4.82931 4.92063 5.02205 5.04668 5.05714 5.12397 5.15482 5.32842 5.42900 5.54136 5.54610 5.59381 5.87074 5.99436 6.12162 6.51428 6.61660 6.87289 6.91024 7.19706 7.42344 8.00421 8.78229 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.002479 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.821675 B =11291.689924 C =12118.266015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.068 4.068 4 C -0.201 4.201 5 C -0.114 4.114 6 C 0.544 3.456 7 O -0.593 6.593 8 N -0.697 5.697 9 C 0.157 3.843 10 H 0.075 0.925 11 C -0.114 4.114 12 C 0.062 3.938 13 N -0.529 5.529 14 C 0.056 3.944 15 C 0.449 3.551 16 O -0.605 6.605 17 N -0.592 5.592 18 C -0.325 4.325 19 H 0.053 0.947 20 C -0.019 4.019 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.258 1.258 24 H -0.278 1.278 25 H -0.227 1.227 26 C 0.028 3.972 27 C 0.114 3.886 28 H 0.080 0.920 29 O -0.567 6.567 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.409 0.591 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.061 0.939 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.390 0.610 47 H 0.278 0.722 48 H 0.110 0.890 49 H 0.052 0.948 50 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.333 -13.587 10.406 30.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C -0.088 4.088 4 C -0.204 4.204 5 C -0.171 4.171 6 C 0.335 3.665 7 O -0.476 6.476 8 N -0.349 5.349 9 C 0.051 3.949 10 H 0.093 0.907 11 C -0.153 4.153 12 C -0.066 4.066 13 N -0.255 5.255 14 C -0.074 4.074 15 C 0.237 3.763 16 O -0.489 6.489 17 N -0.234 5.234 18 C -0.454 4.454 19 H 0.071 0.929 20 C -0.217 4.217 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.183 1.183 24 H -0.203 1.203 25 H -0.150 1.150 26 C -0.100 4.100 27 C 0.053 3.947 28 H 0.098 0.902 29 O -0.375 6.375 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.248 0.752 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.146 0.854 45 H 0.098 0.902 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.128 0.872 49 H 0.071 0.929 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -25.760 -12.111 8.739 29.777 hybrid contribution 1.290 -0.762 0.523 1.587 sum -24.471 -12.874 9.261 29.160 Atomic orbital electron populations 1.21694 0.93900 1.02877 1.01922 1.20935 0.96893 0.91654 1.04635 1.23760 0.91775 0.98584 0.94644 1.21531 1.03957 0.92487 1.02433 1.20890 1.00760 0.97768 0.97635 1.18985 0.77761 0.89546 0.80243 1.90750 1.56842 1.57298 1.42689 1.45769 1.47080 1.09863 1.32178 1.20885 0.96607 0.82859 0.94535 0.90715 1.21782 0.93657 1.01386 0.98519 1.22015 0.97649 0.96641 0.90284 1.61327 1.02656 1.59400 1.02147 1.21828 0.87589 0.97589 1.00434 1.20942 0.84377 0.84553 0.86406 1.90536 1.84608 1.35718 1.38036 1.42024 1.06762 1.38875 1.35761 1.18970 0.87097 1.22147 1.17206 0.92857 1.26151 0.94053 1.00851 1.00655 1.69814 1.00876 1.44832 1.42240 0.85350 0.79422 0.78029 0.78610 1.18283 1.20276 1.15025 1.22890 0.90357 0.98958 0.97786 1.21786 0.85726 0.99247 0.87893 0.90193 1.86524 1.39167 1.89466 1.22316 0.92879 0.90498 0.92965 0.89212 0.88776 0.87757 0.89711 0.89050 0.91518 0.75216 0.90593 0.92109 0.94473 0.92044 0.85399 0.90158 0.77488 0.91249 0.87195 0.92950 0.74867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 71.98 0.71 -0.74 16 2 C -0.10 -1.12 6.03 29.85 0.18 -0.94 16 3 C -0.07 -1.22 9.08 24.52 0.22 -0.99 16 4 C -0.20 -3.86 5.99 -18.70 -0.11 -3.97 16 5 C -0.11 -1.31 8.73 71.24 0.62 -0.68 16 6 C 0.54 14.35 7.72 86.57 0.67 15.02 16 7 O -0.59 -20.66 15.90 -4.10 -0.07 -20.72 16 8 N -0.70 -15.39 4.12 -445.75 -1.84 -17.22 16 9 C 0.16 3.82 2.51 45.07 0.11 3.94 16 10 H 0.07 2.14 7.59 -2.38 -0.02 2.12 16 11 C -0.11 -3.32 5.76 30.65 0.18 -3.15 16 12 C 0.06 1.90 4.96 86.32 0.43 2.32 16 13 N -0.53 -14.27 4.39 -901.00 -3.96 -18.22 16 14 C 0.06 1.55 5.45 85.56 0.47 2.02 16 15 C 0.45 19.42 7.46 87.66 0.65 20.07 16 16 O -0.61 -32.59 13.92 -3.05 -0.04 -32.63 16 17 N -0.59 -26.94 5.09 -306.99 -1.56 -28.50 16 18 C -0.32 -18.75 10.16 84.04 0.85 -17.90 16 19 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 20 C -0.02 -1.04 5.50 84.93 0.47 -0.57 16 21 N -0.94 -56.31 13.96 21.66 0.30 -56.01 16 22 Si 0.97 37.82 27.74 68.60 1.90 39.73 16 23 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 24 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.23 -7.28 6.52 99.48 0.65 -6.63 16 26 C 0.03 0.47 4.92 86.33 0.43 0.90 16 27 C 0.11 2.10 3.36 30.65 0.10 2.21 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 O -0.57 -8.60 13.14 -148.98 -1.96 -10.56 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.74 5.61 -2.39 -0.01 0.73 16 35 H 0.10 2.30 7.51 -2.91 -0.02 2.28 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.76 6.27 -2.39 -0.01 0.75 16 38 H 0.07 0.72 6.80 -2.39 -0.02 0.70 16 39 H 0.41 7.03 5.16 -92.71 -0.48 6.55 16 40 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.04 1.01 7.69 -2.39 -0.02 1.00 16 43 H 0.06 2.48 5.80 -2.39 -0.01 2.47 16 44 H 0.13 2.67 7.98 -2.39 -0.02 2.65 16 45 H 0.08 1.79 8.12 -2.39 -0.02 1.77 16 46 H 0.39 14.41 5.76 -92.71 -0.53 13.88 16 47 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 48 H 0.11 1.32 8.01 -2.39 -0.02 1.30 16 49 H 0.05 0.74 6.64 -2.39 -0.02 0.73 16 50 H 0.40 2.31 9.08 -74.06 -0.67 1.63 16 Total: -1.00 -84.66 395.35 -2.00 -86.66 By element: Atomic # 1 Polarization: 40.72 SS G_CDS: -0.76 Total: 39.96 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 5.98 Total: 17.53 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -7.05 Total: -119.96 kcal Atomic # 8 Polarization: -61.84 SS G_CDS: -2.07 Total: -63.91 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 1.90 Total: 39.73 kcal Total: -84.66 -2.00 -86.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099720653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.395 kcal (2) G-P(sol) polarization free energy of solvation -84.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds