Wall clock time and date at job start Sat Apr 11 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50693 * 109.47196 * 2 1 4 4 C 1.32997 * 120.00085 * 183.76715 * 3 2 1 5 5 C 1.50703 * 120.00083 * 184.34682 * 4 3 2 6 6 C 1.47097 * 120.00063 * 4.34415 * 4 3 2 7 7 O 1.21618 * 119.99912 * 353.94784 * 6 4 3 8 8 N 1.34775 * 120.00517 * 173.94006 * 6 4 3 9 9 C 1.46496 * 120.00558 * 179.72868 * 8 6 4 10 10 H 1.09005 * 109.51857 * 34.87209 * 9 8 6 11 11 C 1.53123 * 109.52275 * 274.68634 * 9 8 6 12 12 C 1.53040 * 109.27996 * 182.43842 * 11 9 8 13 13 N 1.46850 * 109.52055 * 59.17635 * 12 11 9 14 14 C 1.46904 * 110.99515 * 174.16037 * 13 12 11 15 15 C 1.50695 * 109.47232 * 294.21385 * 14 13 12 16 16 O 1.21302 * 120.00231 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00192 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00077 * 179.97438 * 17 15 14 19 19 H 1.07990 * 120.00191 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99635 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00280 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99834 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47050 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46987 * 120.00150 * 22 20 18 25 25 H 1.48498 * 109.47342 * 240.00383 * 22 20 18 26 26 C 1.46845 * 111.19789 * 298.25801 * 13 12 11 27 27 C 1.53036 * 109.52448 * 61.74403 * 26 13 12 28 28 H 1.09006 * 109.50427 * 60.76107 * 27 26 13 29 29 O 1.42900 * 109.53448 * 180.85633 * 27 26 13 30 30 H 1.09008 * 109.46824 * 60.00086 * 1 2 3 31 31 H 1.09001 * 109.47389 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47808 * 300.00463 * 1 2 3 33 33 H 1.08999 * 109.47332 * 239.99399 * 2 1 3 34 34 H 1.09008 * 109.46824 * 119.99914 * 2 1 3 35 35 H 1.08001 * 120.00171 * 3.77071 * 3 2 1 36 36 H 1.08995 * 109.47076 * 270.00035 * 5 4 3 37 37 H 1.08998 * 109.47308 * 30.00061 * 5 4 3 38 38 H 1.09002 * 109.47260 * 150.00235 * 5 4 3 39 39 H 0.97001 * 119.99596 * 0.02562 * 8 6 4 40 40 H 1.09004 * 109.50159 * 302.37980 * 11 9 8 41 41 H 1.09001 * 109.50090 * 62.49628 * 11 9 8 42 42 H 1.09001 * 109.45872 * 299.16172 * 12 11 9 43 43 H 1.08993 * 109.45391 * 179.18916 * 12 11 9 44 44 H 1.08995 * 109.47028 * 54.21062 * 14 13 12 45 45 H 1.08999 * 109.46873 * 174.21070 * 14 13 12 46 46 H 0.96997 * 119.99712 * 359.97438 * 17 15 14 47 47 H 0.96998 * 120.00540 * 179.97438 * 21 20 18 48 48 H 1.08989 * 109.46261 * 301.72552 * 26 13 12 49 49 H 1.09001 * 109.44969 * 181.75391 * 26 13 12 50 50 H 0.96703 * 113.99819 * 299.81910 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 3.3375 1.6646 -0.0757 5 6 3.8467 3.0796 0.0229 6 6 4.2842 0.5532 -0.2555 7 8 3.8861 -0.5956 -0.2248 8 7 5.5926 0.8078 -0.4546 9 6 6.5363 -0.2992 -0.6277 10 1 6.0487 -1.1128 -1.1648 11 6 7.0001 -0.7957 0.7445 12 6 8.0313 -1.9108 0.5564 13 7 9.1739 -1.3982 -0.2105 14 6 10.2452 -2.4001 -0.2919 15 6 10.8101 -2.6444 1.0836 16 8 10.3645 -2.0427 2.0380 17 7 11.8112 -3.5308 1.2534 18 6 12.3255 -3.7526 2.5047 19 1 11.9282 -3.2175 3.3544 20 6 13.3572 -4.6668 2.6797 21 7 13.8402 -5.3183 1.6458 22 14 14.0575 -4.9697 4.3848 23 1 13.3453 -4.1178 5.3709 24 1 13.8795 -6.3990 4.7463 25 1 15.5039 -4.6334 4.3928 26 6 8.7607 -0.9594 -1.5496 27 6 7.7514 0.1840 -1.4243 28 1 8.2152 1.0239 -0.9069 29 8 7.3341 0.5978 -2.7269 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3635 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 1.3324 2.2410 0.0615 36 1 3.8918 3.5197 -0.9732 37 1 3.1733 3.6653 0.6487 38 1 4.8432 3.0772 0.4645 39 1 5.9101 1.7241 -0.4788 40 1 7.4521 0.0287 1.2961 41 1 6.1450 -1.1806 1.3002 42 1 7.5745 -2.7405 0.0169 43 1 8.3741 -2.2565 1.5316 44 1 9.8421 -3.3314 -0.6898 45 1 11.0344 -2.0355 -0.9494 46 1 12.1677 -4.0117 0.4902 47 1 14.5607 -5.9562 1.7678 48 1 8.3007 -1.7936 -2.0792 49 1 9.6336 -0.6143 -2.1038 50 1 8.0543 0.9170 -3.2877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099720654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:13 Heat of formation + Delta-G solvation = -108.164003 kcal Electronic energy + Delta-G solvation = -29883.911526 eV Core-core repulsion = 25718.144492 eV Total energy + Delta-G solvation = -4165.767034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.42756 -39.22476 -37.99420 -36.04502 -35.76388 -34.79257 -33.87478 -32.77185 -31.39397 -30.95961 -29.63645 -27.32327 -27.12263 -24.83966 -23.65195 -23.05801 -22.44447 -21.55988 -20.28701 -19.24586 -19.18459 -17.91740 -17.33713 -16.69217 -16.47647 -16.06364 -15.43403 -15.18589 -14.93509 -14.68939 -14.36818 -14.28426 -14.14462 -14.03622 -13.83686 -13.62197 -13.38825 -13.32657 -13.03377 -12.83104 -12.76535 -12.64296 -12.40396 -11.93927 -11.86812 -11.57357 -11.47816 -11.37151 -11.29804 -11.23513 -11.10990 -10.77219 -10.50856 -10.34965 -10.26381 -10.22304 -9.62312 -9.50436 -9.33995 -8.92990 -8.47744 -8.00608 -7.90469 -6.43068 -3.83810 1.22143 3.08106 3.15430 3.18845 3.26240 3.33217 3.70449 3.88303 4.08517 4.24509 4.45694 4.56802 4.65535 4.88233 4.91935 4.99423 5.04035 5.07387 5.08204 5.20232 5.23662 5.26670 5.29037 5.36662 5.45086 5.49407 5.60760 5.61699 5.69765 5.75458 5.82243 5.82663 5.90600 5.94211 5.97074 6.04716 6.17931 6.23783 6.31011 6.39302 6.43657 6.52028 7.18745 7.24310 7.47036 7.47798 7.54375 8.05147 8.18796 8.60084 9.16851 9.52882 10.04304 10.74684 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018550 B = 0.002093 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.072170 B =13372.502011 C =14107.241083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.096 4.096 3 C -0.067 4.067 4 C -0.196 4.196 5 C -0.114 4.114 6 C 0.551 3.449 7 O -0.539 6.539 8 N -0.714 5.714 9 C 0.155 3.845 10 H 0.090 0.910 11 C -0.119 4.119 12 C 0.052 3.948 13 N -0.512 5.512 14 C 0.047 3.953 15 C 0.443 3.557 16 O -0.577 6.577 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.027 3.973 27 C 0.103 3.897 28 H 0.071 0.929 29 O -0.563 6.563 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.027 0.973 43 H 0.111 0.889 44 H 0.049 0.951 45 H 0.089 0.911 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.041 0.959 49 H 0.080 0.920 50 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.547 14.493 -9.220 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.133 4.133 3 C -0.086 4.086 4 C -0.199 4.199 5 C -0.171 4.171 6 C 0.340 3.660 7 O -0.418 6.418 8 N -0.364 5.364 9 C 0.050 3.950 10 H 0.108 0.892 11 C -0.158 4.158 12 C -0.076 4.076 13 N -0.238 5.238 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.461 6.461 17 N -0.200 5.200 18 C -0.427 4.427 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.102 4.102 27 C 0.043 3.957 28 H 0.089 0.911 29 O -0.368 6.368 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.234 0.766 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.129 0.871 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.099 0.901 50 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -19.370 14.171 -8.090 25.327 hybrid contribution 1.220 -0.568 -0.433 1.414 sum -18.150 13.603 -8.523 24.230 Atomic orbital electron populations 1.21909 0.96211 1.01853 1.01370 1.20837 0.94497 0.93502 1.04445 1.23708 0.94488 0.98864 0.91588 1.21473 0.94470 0.95348 1.08613 1.20760 1.01676 0.92323 1.02356 1.18382 0.82169 0.88945 0.76520 1.90782 1.77765 1.22357 1.50892 1.45849 1.07200 1.09941 1.73422 1.21047 0.88072 0.89858 0.95980 0.89171 1.21913 0.98593 0.99650 0.95598 1.22283 0.89513 0.94736 1.01037 1.61501 1.09475 1.39697 1.13114 1.21840 0.94630 0.94049 0.97914 1.19702 0.83846 0.83895 0.89685 1.90489 1.62260 1.51541 1.41810 1.41873 1.31296 1.36548 1.10315 1.19744 1.15094 1.21581 0.86310 0.87825 1.25268 0.97043 0.96398 0.99299 1.69615 1.27573 1.27062 1.30036 0.85803 0.78584 0.78148 0.81825 1.19212 1.20777 1.20763 1.22747 0.98290 0.97704 0.91489 1.22018 0.93590 0.96465 0.83632 0.91117 1.86556 1.38366 1.85997 1.25843 0.92954 0.92504 0.92912 0.89179 0.89553 0.85913 0.91182 0.91223 0.91567 0.76596 0.90460 0.90508 0.95501 0.87126 0.93276 0.89272 0.77494 0.91920 0.94077 0.90142 0.77420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.85 37.16 0.37 -0.81 16 2 C -0.10 -0.96 4.52 -27.89 -0.13 -1.08 16 3 C -0.07 -0.58 9.25 -36.13 -0.33 -0.92 16 4 C -0.20 -1.87 6.00 -102.85 -0.62 -2.49 16 5 C -0.11 -0.75 9.49 36.01 0.34 -0.41 16 6 C 0.55 6.90 7.67 -12.67 -0.10 6.81 16 7 O -0.54 -8.37 12.76 5.26 0.07 -8.30 16 8 N -0.71 -8.05 4.92 -54.87 -0.27 -8.32 16 9 C 0.16 1.99 2.21 -67.81 -0.15 1.84 16 10 H 0.09 1.35 7.57 -51.93 -0.39 0.96 16 11 C -0.12 -1.70 5.67 -26.65 -0.15 -1.85 16 12 C 0.05 0.86 5.11 -3.83 -0.02 0.84 16 13 N -0.51 -8.20 4.40 -236.12 -1.04 -9.24 16 14 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 15 C 0.44 10.22 7.46 -10.99 -0.08 10.14 16 16 O -0.58 -15.12 13.90 5.54 0.08 -15.04 16 17 N -0.56 -14.07 5.29 -10.96 -0.06 -14.12 16 18 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 22 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.03 0.33 5.09 -3.84 -0.02 0.31 16 27 C 0.10 1.15 3.14 -26.65 -0.08 1.06 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 O -0.56 -5.62 13.23 -35.23 -0.47 -6.09 16 30 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 1.07 6.87 -51.93 -0.36 0.72 16 34 H 0.09 0.99 7.55 -51.92 -0.39 0.60 16 35 H 0.12 0.76 7.99 -52.49 -0.42 0.34 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 38 H 0.07 0.41 6.96 -51.93 -0.36 0.05 16 39 H 0.40 3.62 6.86 -40.82 -0.28 3.34 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.11 2.21 5.78 -51.93 -0.30 1.91 16 44 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 45 H 0.09 1.37 7.99 -51.93 -0.41 0.96 16 46 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 47 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.04 0.52 8.14 -51.94 -0.42 0.09 16 49 H 0.08 0.85 8.02 -51.93 -0.42 0.43 16 50 H 0.38 2.18 9.08 45.56 0.41 2.60 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -33.02 402.00 -8.57 -41.59 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -7.40 Total: 14.83 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -1.24 Total: 6.37 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.64 Total: -55.33 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.32 Total: -29.43 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.02 -8.57 -41.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099720654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.577 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds