Wall clock time and date at job start Sat Apr 11 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50692 * 120.00162 * 2 1 4 4 C 1.53010 * 109.47066 * 124.99842 * 3 2 1 5 5 C 1.52991 * 109.47261 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47525 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99523 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00373 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00134 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.57416 * 34.83426 * 9 8 6 11 11 C 1.53119 * 109.52071 * 274.68102 * 9 8 6 12 12 C 1.53035 * 109.28103 * 182.43721 * 11 9 8 13 13 N 1.46847 * 109.51903 * 59.17885 * 12 11 9 14 14 C 1.46902 * 111.00143 * 174.15963 * 13 12 11 15 15 C 1.50705 * 109.46916 * 66.04576 * 14 13 12 16 16 O 1.21297 * 120.00087 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00128 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00138 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00032 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00289 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00345 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99824 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46753 * 89.99822 * 22 20 18 24 24 H 1.48493 * 109.47029 * 209.99903 * 22 20 18 25 25 H 1.48502 * 109.47047 * 330.00018 * 22 20 18 26 26 C 1.46842 * 111.20286 * 298.25872 * 13 12 11 27 27 C 1.53035 * 109.52108 * 61.73880 * 26 13 12 28 28 H 1.09006 * 109.53347 * 60.78999 * 27 26 13 29 29 O 1.42903 * 109.50396 * 180.87957 * 27 26 13 30 30 H 1.08003 * 120.00495 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.99811 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99811 * 180.02562 * 2 1 3 33 33 H 1.08993 * 109.47461 * 5.00186 * 3 2 1 34 34 H 1.08997 * 109.47287 * 244.99583 * 3 2 1 35 35 H 1.09007 * 109.46638 * 59.99815 * 4 3 2 36 36 H 1.08997 * 109.46856 * 300.00005 * 4 3 2 37 37 H 1.09000 * 109.47267 * 59.99945 * 5 4 3 38 38 H 1.09000 * 109.47287 * 300.00369 * 5 4 3 39 39 H 0.97002 * 119.99939 * 0.02562 * 8 6 5 40 40 H 1.09007 * 109.50568 * 302.38128 * 11 9 8 41 41 H 1.09008 * 109.50416 * 62.49861 * 11 9 8 42 42 H 1.08994 * 109.46726 * 179.19214 * 12 11 9 43 43 H 1.08993 * 109.46542 * 299.17806 * 12 11 9 44 44 H 1.08995 * 109.47536 * 186.04542 * 14 13 12 45 45 H 1.09006 * 109.47127 * 306.05251 * 14 13 12 46 46 H 0.97002 * 119.99511 * 0.02562 * 17 15 14 47 47 H 0.96998 * 120.00287 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.46183 * 301.73186 * 26 13 12 49 49 H 1.08997 * 109.46831 * 181.76203 * 26 13 12 50 50 H 0.96700 * 114.00311 * 299.80985 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.8005 2.6576 1.1814 6 6 4.7579 2.6850 2.3449 7 8 4.8219 1.7379 3.0998 8 7 5.5428 3.7618 2.5466 9 6 6.4739 3.7880 3.6774 10 1 6.8643 2.7855 3.8523 11 6 5.7433 4.2785 4.9305 12 6 6.7346 4.3618 6.0933 13 7 7.8220 5.2856 5.7459 14 6 8.7187 5.4974 6.8900 15 6 9.4318 4.2099 7.2143 16 8 9.2148 3.2141 6.5567 17 7 10.3108 4.1651 8.2351 18 6 10.9599 2.9941 8.5298 19 1 10.7672 2.1076 7.9438 20 6 11.8664 2.9479 9.5818 21 7 12.4890 1.8256 9.8640 22 14 12.2012 4.4818 10.5942 23 1 11.2558 4.5360 11.7380 24 1 13.5949 4.4430 11.1052 25 1 12.0190 5.6856 9.7439 26 6 8.5679 4.8107 4.5735 27 6 7.6313 4.7407 3.3654 28 1 7.2373 5.7343 3.1515 29 8 8.3526 4.2591 2.2297 30 1 -0.5401 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 1.3587 2.1315 0.0896 34 1 2.6213 1.4025 -0.9313 35 1 3.7399 0.5063 1.0921 36 1 2.4772 1.2355 2.1130 37 1 3.0959 3.4845 1.2707 38 1 4.3583 2.7547 0.2500 39 1 5.4913 4.5194 1.9431 40 1 5.3195 5.2650 4.7420 41 1 4.9445 3.5808 5.1825 42 1 6.2207 4.7244 6.9835 43 1 7.1477 3.3726 6.2901 44 1 9.4508 6.2653 6.6406 45 1 8.1361 5.8175 7.7539 46 1 10.4840 4.9614 8.7612 47 1 13.1215 1.7933 10.5986 48 1 8.9722 3.8192 4.7775 49 1 9.3855 5.4992 4.3599 50 1 9.1016 4.8151 1.9747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099976645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:55 Heat of formation + Delta-G solvation = -103.269518 kcal Electronic energy + Delta-G solvation = -29718.150409 eV Core-core repulsion = 25552.595615 eV Total energy + Delta-G solvation = -4165.554793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31076 -39.33747 -37.93046 -36.25759 -35.91045 -34.71226 -33.90205 -32.71657 -31.82970 -31.31568 -29.55113 -27.95976 -26.77520 -24.52824 -23.20667 -22.73124 -21.85530 -20.43440 -20.16866 -19.79931 -19.48162 -18.33995 -17.30107 -17.11630 -16.43325 -16.17229 -16.05807 -15.35263 -15.23394 -15.07859 -14.79696 -14.28833 -14.16675 -13.90813 -13.74639 -13.69915 -13.59446 -13.14398 -12.95811 -12.69372 -12.52164 -12.29651 -12.26888 -11.97803 -11.83093 -11.79500 -11.36610 -11.29495 -11.19277 -11.03289 -10.96473 -10.81818 -10.64436 -10.42863 -10.06803 -10.05732 -9.74969 -9.60436 -9.55044 -9.38433 -9.01859 -8.24739 -7.59558 -6.38439 -3.89992 1.97777 2.66195 2.97056 3.01857 3.10601 3.12592 3.59632 3.92408 4.03670 4.28351 4.46413 4.57932 4.60863 4.69504 4.81788 4.92195 4.98003 5.09349 5.11287 5.18829 5.21264 5.30100 5.33069 5.37714 5.42950 5.48254 5.59365 5.63593 5.64959 5.76394 5.82704 5.85972 5.88652 6.02267 6.09081 6.11180 6.13346 6.32959 6.45957 6.46486 6.49644 6.61330 7.11632 7.20609 7.48468 7.49861 7.62952 8.07732 8.25471 8.49689 8.87030 9.34217 9.71987 10.74243 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.002001 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.746319 B =13991.433971 C =14579.837949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.095 4.095 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.510 3.490 7 O -0.538 6.538 8 N -0.720 5.720 9 C 0.154 3.846 10 H 0.096 0.904 11 C -0.117 4.117 12 C 0.040 3.960 13 N -0.510 5.510 14 C 0.039 3.961 15 C 0.412 3.588 16 O -0.574 6.574 17 N -0.581 5.581 18 C -0.309 4.309 19 H 0.119 0.881 20 C 0.043 3.957 21 N -0.877 5.877 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.002 3.998 27 C 0.107 3.893 28 H 0.060 0.940 29 O -0.562 6.562 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.397 0.603 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.371 0.629 47 H 0.274 0.726 48 H 0.098 0.902 49 H 0.069 0.931 50 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.495 9.916 -17.381 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.133 4.133 4 C -0.139 4.139 5 C -0.180 4.180 6 C 0.296 3.704 7 O -0.414 6.414 8 N -0.370 5.370 9 C 0.049 3.951 10 H 0.114 0.886 11 C -0.156 4.156 12 C -0.089 4.089 13 N -0.234 5.234 14 C -0.093 4.093 15 C 0.198 3.802 16 O -0.459 6.459 17 N -0.219 5.219 18 C -0.438 4.438 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.516 5.516 22 Si 0.707 3.293 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.194 1.194 26 C -0.126 4.126 27 C 0.047 3.953 28 H 0.078 0.922 29 O -0.366 6.366 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.231 0.769 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.204 0.796 47 H 0.085 0.915 48 H 0.116 0.884 49 H 0.088 0.912 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -18.096 8.406 -17.241 26.370 hybrid contribution 1.322 1.269 0.939 2.059 sum -16.774 9.674 -16.302 25.312 Atomic orbital electron populations 1.23842 0.95979 1.01763 1.02001 1.22978 0.96036 0.98676 0.99116 1.20803 0.98178 0.95441 0.98830 1.21289 0.97708 0.96355 0.98517 1.21686 0.98176 1.00551 0.97550 1.20700 0.81133 0.82194 0.86373 1.90739 1.67982 1.35229 1.47453 1.45977 1.40710 1.19698 1.30635 1.21004 0.87488 1.01133 0.85428 0.88566 1.21876 0.98277 1.01466 0.93951 1.22251 0.91828 0.97939 0.96842 1.62436 1.10614 1.46331 1.04056 1.22086 0.96257 0.96260 0.94666 1.21030 0.84288 0.91115 0.83786 1.90459 1.66962 1.36841 1.51610 1.42395 1.38418 1.11887 1.29246 1.19461 1.19591 0.89731 1.14970 0.86299 1.25085 0.96514 0.97204 0.97289 1.69624 1.26954 1.25394 1.29614 0.86660 0.79118 0.82552 0.81002 1.19538 1.20102 1.19421 1.23090 0.95714 1.04016 0.89807 1.21966 0.91470 0.95907 0.85910 0.92230 1.86552 1.47396 1.55114 1.47570 0.88610 0.88689 0.87318 0.91521 0.90926 0.90931 0.91016 0.89082 0.88953 0.76898 0.91388 0.90632 0.90924 0.90805 0.89095 0.88988 0.79595 0.91498 0.88404 0.91228 0.77543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 14.32 29.02 0.42 -0.96 16 2 C -0.15 -1.13 9.52 -36.03 -0.34 -1.47 16 3 C -0.10 -0.65 5.66 -27.88 -0.16 -0.81 16 4 C -0.10 -0.90 4.49 -26.73 -0.12 -1.02 16 5 C -0.14 -1.12 5.70 -27.89 -0.16 -1.28 16 6 C 0.51 6.37 7.80 -10.99 -0.09 6.29 16 7 O -0.54 -9.29 15.65 5.56 0.09 -9.20 16 8 N -0.72 -8.11 4.99 -53.69 -0.27 -8.38 16 9 C 0.15 2.16 2.20 -67.81 -0.15 2.02 16 10 H 0.10 1.78 7.58 -51.93 -0.39 1.39 16 11 C -0.12 -1.57 5.67 -26.65 -0.15 -1.72 16 12 C 0.04 0.62 5.10 -3.83 -0.02 0.60 16 13 N -0.51 -7.65 4.86 -236.12 -1.15 -8.79 16 14 C 0.04 0.62 5.86 -4.97 -0.03 0.59 16 15 C 0.41 8.85 7.20 -10.98 -0.08 8.77 16 16 O -0.57 -14.40 11.20 5.54 0.06 -14.34 16 17 N -0.58 -13.41 5.09 -10.96 -0.06 -13.46 16 18 C -0.31 -8.58 10.16 -14.94 -0.15 -8.74 16 19 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 20 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 21 N -0.88 -25.40 13.96 55.50 0.77 -24.63 16 22 Si 0.88 19.02 27.74 -169.99 -4.71 14.31 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 26 C 0.00 0.03 4.60 -3.84 -0.02 0.02 16 27 C 0.11 1.36 3.14 -26.66 -0.08 1.27 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 O -0.56 -6.98 13.23 -35.23 -0.47 -7.45 16 30 H 0.10 0.59 8.06 -52.48 -0.42 0.16 16 31 H 0.09 0.58 7.84 -52.49 -0.41 0.17 16 32 H 0.11 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 3.26 8.61 -40.82 -0.35 2.91 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 42 H 0.07 1.03 8.06 -51.93 -0.42 0.62 16 43 H 0.07 1.46 6.00 -51.93 -0.31 1.15 16 44 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.09 1.26 8.06 -51.93 -0.42 0.84 16 46 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 47 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 48 H 0.10 1.95 5.36 -51.93 -0.28 1.68 16 49 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 50 H 0.38 3.12 9.08 45.56 0.41 3.53 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -34.70 401.62 -8.34 -43.04 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -7.43 Total: 18.24 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.23 Total: 4.61 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.70 Total: -55.26 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.32 Total: -30.98 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.70 -8.34 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099976645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.233 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds