Wall clock time and date at job start Sat Apr 11 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47371 * 2 1 4 4 C 1.50705 * 115.54854 * 65.23818 * 3 2 1 5 5 O 1.21275 * 120.00071 * 245.32478 * 4 3 2 6 6 N 1.34775 * 119.99723 * 65.32116 * 4 3 2 7 7 C 1.46504 * 119.99519 * 174.89685 * 6 4 3 8 8 H 1.08997 * 109.52794 * 35.12889 * 7 6 4 9 9 C 1.53120 * 109.52147 * 274.99493 * 7 6 4 10 10 C 1.53035 * 109.28209 * 182.37726 * 9 7 6 11 11 N 1.46852 * 109.51805 * 59.18187 * 10 9 7 12 12 C 1.46901 * 110.99669 * 174.16433 * 11 10 9 13 13 C 1.50701 * 109.47518 * 66.04596 * 12 11 10 14 14 O 1.21292 * 119.99656 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00432 * 180.02562 * 13 12 11 16 16 C 1.37095 * 120.00478 * 180.02562 * 15 13 12 17 17 H 1.08006 * 119.99831 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00295 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47333 * 59.99208 * 20 18 16 22 22 H 1.48502 * 109.47244 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46916 * 299.99519 * 20 18 16 24 24 C 1.46851 * 111.19951 * 298.25798 * 11 10 9 25 25 C 1.53037 * 109.52188 * 61.74280 * 24 11 10 26 26 H 1.08997 * 109.50260 * 180.87459 * 25 24 11 27 27 O 1.42897 * 109.49978 * 60.76132 * 25 24 11 28 28 C 1.52993 * 117.49651 * 210.90351 * 3 2 1 29 29 C 1.52998 * 117.50077 * 279.56535 * 3 2 1 30 30 H 1.09006 * 109.46839 * 54.96717 * 1 2 3 31 31 H 1.08994 * 109.47329 * 174.97417 * 1 2 3 32 32 H 1.09002 * 109.46584 * 294.97771 * 1 2 3 33 33 H 1.09006 * 109.46262 * 239.99784 * 2 1 3 34 34 H 1.08998 * 109.47034 * 120.00856 * 2 1 3 35 35 H 0.96999 * 120.00488 * 354.89525 * 6 4 3 36 36 H 1.09001 * 109.50149 * 62.43998 * 9 7 6 37 37 H 1.08999 * 109.54063 * 302.34491 * 9 7 6 38 38 H 1.09003 * 109.46134 * 299.17220 * 10 9 7 39 39 H 1.08997 * 109.46474 * 179.19683 * 10 9 7 40 40 H 1.09003 * 109.46808 * 186.04507 * 12 11 10 41 41 H 1.09000 * 109.47295 * 306.04425 * 12 11 10 42 42 H 0.97005 * 119.99479 * 359.97438 * 15 13 12 43 43 H 0.97003 * 120.00034 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.46068 * 181.75804 * 24 11 10 45 45 H 1.09002 * 109.46276 * 301.73086 * 24 11 10 46 46 H 0.96705 * 114.00719 * 60.19956 * 27 25 24 47 47 H 1.09006 * 117.50111 * 215.00285 * 28 3 2 48 48 H 1.09000 * 117.50626 * 0.02629 * 28 3 2 49 49 H 1.08993 * 117.50014 * 359.97438 * 29 3 2 50 50 H 1.08997 * 117.49650 * 144.97516 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7199 2.2451 1.2347 5 8 0.9805 3.2035 1.1600 6 7 2.2551 1.8977 2.4218 7 6 2.0348 2.7409 3.5994 8 1 1.0344 3.1715 3.5572 9 6 3.0749 3.8644 3.6261 10 6 2.8771 4.7062 4.8887 11 7 3.0216 3.8528 6.0750 12 6 2.9755 4.6517 7.3069 13 6 1.6032 5.2543 7.4639 14 8 0.7478 5.0398 6.6311 15 7 1.3266 6.0325 8.5289 16 6 0.0780 6.5803 8.6719 17 1 -0.6839 6.3886 7.9308 18 6 -0.2070 7.3829 9.7698 19 7 0.7202 7.6165 10.6712 20 14 -1.9084 8.1288 9.9650 21 1 -2.9189 7.0433 10.0421 22 1 -1.9548 8.9371 11.2099 23 1 -2.2044 8.9985 8.7982 24 6 2.0033 2.7949 6.0954 25 6 2.1749 1.8961 4.8687 26 1 1.4093 1.1204 4.8760 27 8 3.4689 1.2906 4.8984 28 6 3.3734 1.7202 -0.6970 29 6 2.0630 2.1837 -1.3382 30 1 -0.3633 0.5900 -0.8415 31 1 -0.3634 -1.0236 -0.0900 32 1 -0.3632 0.4340 0.9316 33 1 1.8932 -0.5139 -0.8901 34 1 1.8934 -0.5140 0.8899 35 1 2.7861 1.0894 2.4965 36 1 2.9521 4.4949 2.7455 37 1 4.0763 3.4341 3.6287 38 1 1.8807 5.1479 4.8783 39 1 3.6252 5.4984 4.9179 40 1 3.1915 4.0123 8.1629 41 1 3.7178 5.4479 7.2517 42 1 2.0108 6.2043 9.1947 43 1 0.5212 8.1766 11.4378 44 1 2.1168 2.1990 7.0010 45 1 1.0110 3.2457 6.0793 46 1 3.6277 0.7394 5.6769 47 1 4.0190 2.4836 -0.2626 48 1 3.8871 0.8755 -1.1560 49 1 1.7151 1.6436 -2.2187 50 1 1.8461 3.2518 -1.3257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099989946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:09 Heat of formation + Delta-G solvation = -96.239300 kcal Electronic energy + Delta-G solvation = -30730.474460 eV Core-core repulsion = 26565.224519 eV Total energy + Delta-G solvation = -4165.249940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.52457 -39.52022 -38.01463 -36.92242 -35.47949 -34.60862 -33.82691 -32.21475 -31.50118 -31.07987 -29.65688 -27.22292 -25.20854 -24.34962 -23.28650 -22.91201 -22.62603 -21.79257 -20.08146 -19.42231 -19.12962 -17.96676 -17.06464 -16.80911 -16.36997 -15.98235 -15.67175 -15.44467 -14.90682 -14.69612 -14.51554 -14.45341 -14.12360 -14.00184 -13.88709 -13.56180 -13.26416 -13.18656 -12.73882 -12.66747 -12.56213 -12.10871 -11.90691 -11.76209 -11.65649 -11.48442 -11.40350 -11.28321 -11.17667 -10.99037 -10.75668 -10.66033 -10.48703 -10.40601 -10.28300 -10.24284 -9.87065 -9.65077 -9.48013 -9.21775 -8.95240 -8.03493 -7.40772 -6.48457 -3.89980 2.55445 3.03466 3.14686 3.21755 3.26186 3.46432 3.78682 4.11672 4.14334 4.28826 4.42445 4.52190 4.59019 4.69278 4.85973 4.96103 5.00458 5.04034 5.16207 5.17481 5.25802 5.28374 5.34190 5.46675 5.56847 5.61297 5.63054 5.69833 5.74726 5.79720 5.82515 5.86708 5.90674 5.99774 6.01981 6.10001 6.16608 6.20021 6.29103 6.49509 6.54857 6.71411 7.32699 7.39917 7.48182 7.55436 7.73137 7.97751 8.24659 8.52278 9.09725 9.45642 9.96072 10.67826 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.002418 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.530060 B =11574.734627 C =12196.834408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 C -0.159 4.159 4 C 0.548 3.452 5 O -0.536 6.536 6 N -0.714 5.714 7 C 0.156 3.844 8 H 0.099 0.901 9 C -0.115 4.115 10 C 0.045 3.955 11 N -0.502 5.502 12 C 0.041 3.959 13 C 0.404 3.596 14 O -0.594 6.594 15 N -0.555 5.555 16 C -0.303 4.303 17 H 0.102 0.898 18 C 0.025 3.975 19 N -0.898 5.898 20 Si 0.930 3.070 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.004 3.996 25 C 0.108 3.892 26 H 0.058 0.942 27 O -0.557 6.557 28 C -0.159 4.159 29 C -0.145 4.145 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.404 0.596 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.393 0.607 43 H 0.273 0.727 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.376 0.624 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.697 -15.914 -16.283 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.162 4.162 4 C 0.334 3.666 5 O -0.412 6.412 6 N -0.364 5.364 7 C 0.051 3.949 8 H 0.116 0.884 9 C -0.153 4.153 10 C -0.083 4.083 11 N -0.225 5.225 12 C -0.091 4.091 13 C 0.190 3.810 14 O -0.482 6.482 15 N -0.190 5.190 16 C -0.433 4.433 17 H 0.120 0.880 18 C -0.178 4.178 19 N -0.539 5.539 20 Si 0.757 3.243 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.125 4.125 25 C 0.048 3.952 26 H 0.076 0.924 27 O -0.362 6.362 28 C -0.196 4.196 29 C -0.182 4.182 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.239 0.761 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.226 0.774 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.113 0.887 46 H 0.223 0.777 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.118 -15.129 -17.282 24.046 hybrid contribution -0.991 0.314 1.424 1.763 sum 6.127 -14.815 -15.858 22.550 Atomic orbital electron populations 1.21742 0.94974 1.01581 1.02643 1.21017 0.96460 0.91536 1.02607 1.21521 1.03933 0.97469 0.93298 1.19502 0.79465 0.84039 0.83621 1.90724 1.35870 1.28891 1.85696 1.45934 1.54008 1.28055 1.08438 1.21079 1.00750 0.90669 0.82358 0.88354 1.21815 0.99613 0.96400 0.97515 1.22175 1.02534 0.94783 0.88839 1.62427 1.46828 1.11887 1.01324 1.22058 0.95603 0.97737 0.93712 1.21138 0.90771 0.84763 0.84363 1.90389 1.49461 1.64669 1.43685 1.42060 1.13462 1.42295 1.21141 1.19671 0.89648 1.26211 1.07800 0.87996 1.25290 0.99604 0.97379 0.95490 1.69600 1.33773 1.38414 1.12068 0.85923 0.81661 0.79053 0.77640 1.19873 1.20880 1.19833 1.23072 0.98716 0.93970 0.96744 1.22067 0.85065 0.93681 0.94393 0.92433 1.86415 1.33871 1.67896 1.48003 1.23101 0.90103 1.03706 1.02686 1.22986 0.99841 1.01400 0.94007 0.92258 0.92424 0.92616 0.90973 0.91237 0.76138 0.91928 0.90681 0.91321 0.91384 0.89362 0.89304 0.77359 0.91679 0.91196 0.88697 0.77672 0.88343 0.87895 0.88045 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.72 37.16 0.36 -0.93 16 2 C -0.08 -0.60 5.81 -26.73 -0.16 -0.75 16 3 C -0.16 -1.53 1.90 -155.66 -0.30 -1.83 16 4 C 0.55 7.27 6.54 -10.98 -0.07 7.20 16 5 O -0.54 -9.44 16.33 5.56 0.09 -9.35 16 6 N -0.71 -8.60 5.05 -53.68 -0.27 -8.87 16 7 C 0.16 2.23 2.34 -67.80 -0.16 2.07 16 8 H 0.10 1.70 7.52 -51.93 -0.39 1.31 16 9 C -0.11 -1.71 5.51 -26.65 -0.15 -1.86 16 10 C 0.05 0.76 5.10 -3.83 -0.02 0.74 16 11 N -0.50 -8.11 4.74 -236.11 -1.12 -9.23 16 12 C 0.04 0.70 5.86 -4.97 -0.03 0.67 16 13 C 0.40 9.07 7.20 -10.99 -0.08 8.99 16 14 O -0.59 -14.95 11.20 5.55 0.06 -14.89 16 15 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 16 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 17 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 19 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 20 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 C 0.00 0.06 4.64 -3.83 -0.02 0.04 16 25 C 0.11 1.37 3.43 -26.65 -0.09 1.28 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 O -0.56 -6.16 12.06 -35.23 -0.42 -6.58 16 28 C -0.16 -1.25 9.93 -26.70 -0.26 -1.52 16 29 C -0.15 -1.30 9.78 -26.69 -0.26 -1.56 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 33 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 4.08 8.13 -40.82 -0.33 3.74 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.10 7.80 -51.93 -0.41 0.70 16 38 H 0.07 1.41 6.00 -51.93 -0.31 1.09 16 39 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 42 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 45 H 0.10 1.85 5.36 -51.93 -0.28 1.57 16 46 H 0.38 2.92 9.08 45.56 0.41 3.33 16 47 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.10 1.10 7.99 -51.93 -0.42 0.68 16 LS Contribution 400.24 15.07 6.03 6.03 Total: -1.00 -32.02 400.24 -8.90 -40.92 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -7.44 Total: 18.56 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -1.47 Total: 4.65 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.72 Total: -55.25 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.27 Total: -30.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.02 -8.90 -40.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099989946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.317 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds