Wall clock time and date at job start Sat Apr 11 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47528 * 2 1 4 4 C 1.50694 * 115.55143 * 294.50808 * 3 2 1 5 5 O 1.21286 * 120.00354 * 95.31934 * 4 3 2 6 6 N 1.34777 * 119.99949 * 275.32468 * 4 3 2 7 7 C 1.46500 * 120.00521 * 174.85219 * 6 4 3 8 8 H 1.09004 * 109.57345 * 34.84059 * 7 6 4 9 9 C 1.53119 * 109.55524 * 274.70300 * 7 6 4 10 10 C 1.53043 * 109.31077 * 182.48139 * 9 7 6 11 11 N 1.46845 * 109.52489 * 59.15156 * 10 9 7 12 12 C 1.46891 * 110.99886 * 174.16357 * 11 10 9 13 13 C 1.50703 * 109.47522 * 294.21031 * 12 11 10 14 14 O 1.21294 * 119.99637 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00202 * 179.97438 * 13 12 11 16 16 C 1.37105 * 119.99761 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99867 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99626 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00264 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99724 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46627 * 60.00609 * 20 18 16 22 22 H 1.48496 * 109.46889 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47265 * 300.00520 * 20 18 16 24 24 C 1.46844 * 111.20063 * 298.26280 * 11 10 9 25 25 C 1.53043 * 109.52532 * 61.73972 * 24 11 10 26 26 H 1.08998 * 109.49816 * 60.80384 * 25 24 11 27 27 O 1.42901 * 109.50335 * 180.88125 * 25 24 11 28 28 C 1.53010 * 117.51788 * 80.20006 * 3 2 1 29 29 C 1.52998 * 117.50239 * 148.83265 * 3 2 1 30 30 H 1.08999 * 109.47415 * 63.32631 * 1 2 3 31 31 H 1.08997 * 109.47438 * 183.33461 * 1 2 3 32 32 H 1.09005 * 109.47105 * 303.32976 * 1 2 3 33 33 H 1.09003 * 109.47255 * 240.00125 * 2 1 3 34 34 H 1.09003 * 109.47111 * 119.99876 * 2 1 3 35 35 H 0.97001 * 119.99635 * 354.84741 * 6 4 3 36 36 H 1.08998 * 109.50951 * 62.51368 * 9 7 6 37 37 H 1.09003 * 109.50183 * 302.43505 * 9 7 6 38 38 H 1.09001 * 109.45621 * 299.13915 * 10 9 7 39 39 H 1.08996 * 109.45656 * 179.17070 * 10 9 7 40 40 H 1.09004 * 109.47513 * 54.21553 * 12 11 10 41 41 H 1.09008 * 109.47520 * 174.20905 * 12 11 10 42 42 H 0.96996 * 120.00111 * 0.02562 * 15 13 12 43 43 H 0.97002 * 119.99730 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.46052 * 301.72818 * 24 11 10 45 45 H 1.08993 * 109.46446 * 181.76040 * 24 11 10 46 46 H 0.96701 * 113.99573 * 299.92303 * 27 25 24 47 47 H 1.08990 * 117.50010 * 214.97603 * 28 3 2 48 48 H 1.08998 * 117.49260 * 0.02562 * 28 3 2 49 49 H 1.09001 * 117.49890 * 359.97353 * 29 3 2 50 50 H 1.09000 * 117.50317 * 145.00217 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7250 2.2433 -1.2371 5 8 0.7468 2.9598 -1.2629 6 7 2.5303 2.1632 -2.3149 7 6 2.1649 2.8519 -3.5552 8 1 1.6597 3.7881 -3.3178 9 6 1.2306 1.9619 -4.3795 10 6 0.9020 2.6601 -5.7011 11 7 2.1433 2.9166 -6.4425 12 6 1.8569 3.4605 -7.7766 13 6 1.1484 2.4179 -8.6027 14 8 0.9057 1.3291 -8.1265 15 7 0.7838 2.6957 -9.8700 16 6 0.1388 1.7473 -10.6213 17 1 -0.0773 0.7778 -10.1973 18 6 -0.2376 2.0340 -11.9277 19 7 0.0250 3.2138 -12.4434 20 14 -1.1157 0.7416 -12.9516 21 1 -2.3885 0.3638 -12.2862 22 1 -1.4058 1.2916 -14.3001 23 1 -0.2505 -0.4581 -13.0824 24 6 3.0359 3.8084 -5.6912 25 6 3.4282 3.1444 -4.3693 26 1 3.9542 2.2116 -4.5728 27 8 4.2803 4.0211 -3.6295 28 6 2.0580 2.1860 1.3372 29 6 3.3704 1.7214 0.7023 30 1 -0.3634 0.4613 -0.9183 31 1 -0.3634 -1.0259 0.0598 32 1 -0.3633 0.5647 0.8587 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.3519 1.6495 -2.2693 36 1 0.3104 1.7856 -3.8224 37 1 1.7207 1.0098 -4.5830 38 1 0.3989 3.6053 -5.4971 39 1 0.2487 2.0221 -6.2962 40 1 1.2221 4.3415 -7.6813 41 1 2.7915 3.7372 -8.2646 42 1 0.9776 3.5666 -10.2506 43 1 -0.2375 3.4137 -13.3555 44 1 2.5228 4.7482 -5.4873 45 1 3.9324 4.0045 -6.2793 46 1 5.1010 4.2504 -4.0868 47 1 1.8420 3.2541 1.3220 48 1 1.7067 1.6472 2.2172 49 1 3.8820 0.8774 1.1648 50 1 4.0178 2.4841 0.2697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099989949.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:45 Heat of formation + Delta-G solvation = -97.886205 kcal Electronic energy + Delta-G solvation = -30239.429511 eV Core-core repulsion = 26074.108155 eV Total energy + Delta-G solvation = -4165.321355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.59056 -39.39932 -38.07852 -37.04648 -36.05596 -34.78433 -33.86389 -32.18490 -31.59548 -31.10120 -29.65992 -27.34665 -25.24456 -24.39251 -23.36257 -23.03701 -22.73385 -21.85068 -20.31391 -19.34850 -19.23754 -17.92305 -17.35142 -17.13371 -16.47549 -16.11426 -15.76996 -15.44420 -15.07892 -14.72530 -14.64591 -14.16937 -14.08912 -14.07414 -13.85757 -13.65408 -13.47879 -13.32036 -12.94037 -12.70246 -12.64212 -12.41819 -11.96657 -11.91712 -11.84135 -11.57001 -11.45406 -11.38589 -11.28499 -11.09658 -10.78757 -10.73240 -10.59138 -10.45080 -10.30577 -10.26728 -10.21681 -9.73735 -9.48788 -9.09746 -8.48698 -8.01189 -7.91247 -6.43149 -3.84080 2.51877 2.92363 3.19013 3.25000 3.29047 3.34311 3.68927 3.87891 4.06865 4.23192 4.25132 4.43230 4.53243 4.60150 4.70175 4.87271 4.98188 5.03773 5.07247 5.16956 5.23320 5.24196 5.25993 5.28897 5.35322 5.47350 5.53205 5.59955 5.63283 5.68402 5.71152 5.73813 5.77117 5.81518 5.83984 5.90147 6.00565 6.08478 6.22739 6.28699 6.40259 6.48879 7.17468 7.22822 7.41586 7.46198 7.53665 8.04321 8.14709 8.59760 9.16309 9.52401 10.03892 10.74430 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.002232 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.810187 B =12541.408718 C =13565.278075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.155 4.155 4 C 0.553 3.447 5 O -0.535 6.535 6 N -0.712 5.712 7 C 0.153 3.847 8 H 0.091 0.909 9 C -0.119 4.119 10 C 0.052 3.948 11 N -0.512 5.512 12 C 0.047 3.953 13 C 0.443 3.557 14 O -0.577 6.577 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.027 3.973 25 C 0.104 3.896 26 H 0.072 0.928 27 O -0.563 6.563 28 C -0.145 4.145 29 C -0.166 4.166 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.111 0.889 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.379 0.621 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.433 -0.275 22.776 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.158 4.158 4 C 0.339 3.661 5 O -0.411 6.411 6 N -0.362 5.362 7 C 0.049 3.951 8 H 0.109 0.891 9 C -0.158 4.158 10 C -0.076 4.076 11 N -0.237 5.237 12 C -0.084 4.084 13 C 0.228 3.772 14 O -0.461 6.461 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.103 4.103 25 C 0.044 3.956 26 H 0.090 0.910 27 O -0.368 6.368 28 C -0.183 4.183 29 C -0.203 4.203 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.235 0.765 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.129 0.871 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.226 0.774 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.259 -0.907 23.249 24.689 hybrid contribution 0.201 0.639 -1.281 1.446 sum 8.460 -0.268 21.968 23.542 Atomic orbital electron populations 1.21727 0.94792 1.01531 1.02813 1.20987 0.96672 0.91097 1.02677 1.21506 1.03589 0.97687 0.93001 1.19462 0.82608 0.80951 0.83121 1.90704 1.28186 1.39451 1.82799 1.45871 1.25448 1.53069 1.11797 1.21074 0.94179 0.96763 0.83117 0.89140 1.21912 0.99374 0.99489 0.94983 1.22282 0.91617 0.99576 0.94104 1.61491 1.15744 1.44769 1.01740 1.21843 1.00749 0.96115 0.89736 1.19690 0.85067 0.89143 0.83250 1.90484 1.59530 1.24655 1.71478 1.41860 1.51430 1.16016 1.10660 1.19643 1.32749 0.96509 0.93966 0.87941 1.25264 0.98069 0.97293 0.97306 1.69602 1.47385 1.20942 1.16362 0.85918 0.79736 0.80184 0.78389 1.19901 1.20991 1.19889 1.22754 0.98274 0.94771 0.94462 1.22007 0.90844 0.92809 0.89962 0.91050 1.86549 1.34625 1.68854 1.46771 1.22961 0.99955 1.01028 0.94332 1.23154 0.90276 1.03787 1.03119 0.92305 0.92466 0.92396 0.91076 0.90952 0.76539 0.90664 0.90350 0.95501 0.87071 0.93275 0.89265 0.77483 0.91808 0.94080 0.90110 0.77388 0.88245 0.87918 0.87883 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.74 37.15 0.36 -1.02 16 2 C -0.08 -0.61 5.81 -26.73 -0.16 -0.76 16 3 C -0.15 -1.41 1.86 -155.66 -0.29 -1.70 16 4 C 0.55 6.87 6.40 -10.99 -0.07 6.80 16 5 O -0.54 -8.80 16.68 5.55 0.09 -8.71 16 6 N -0.71 -7.86 4.99 -53.69 -0.27 -8.13 16 7 C 0.15 1.95 2.25 -67.81 -0.15 1.79 16 8 H 0.09 1.37 7.51 -51.93 -0.39 0.98 16 9 C -0.12 -1.68 5.67 -26.65 -0.15 -1.83 16 10 C 0.05 0.85 5.11 -3.83 -0.02 0.83 16 11 N -0.51 -8.14 4.40 -236.11 -1.04 -9.18 16 12 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 13 C 0.44 10.18 7.46 -10.99 -0.08 10.10 16 14 O -0.58 -15.06 13.90 5.55 0.08 -14.98 16 15 N -0.56 -14.03 5.29 -10.96 -0.06 -14.08 16 16 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 17 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 20 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.03 0.33 5.09 -3.83 -0.02 0.31 16 25 C 0.10 1.14 3.14 -26.65 -0.08 1.06 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 O -0.56 -5.52 13.23 -35.23 -0.47 -5.99 16 28 C -0.15 -1.19 9.92 -26.72 -0.27 -1.45 16 29 C -0.17 -1.15 9.92 -26.73 -0.27 -1.42 16 30 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.40 3.54 8.61 -40.82 -0.35 3.18 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.11 2.20 5.78 -51.93 -0.30 1.90 16 40 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 41 H 0.09 1.37 7.99 -51.92 -0.41 0.95 16 42 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 46 H 0.38 2.13 9.08 45.56 0.41 2.54 16 47 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 407.48 15.07 6.14 6.14 Total: -1.00 -33.29 407.48 -8.89 -42.18 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -7.61 Total: 14.84 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.46 Total: 5.63 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.64 Total: -54.99 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.30 Total: -29.68 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.29 -8.89 -42.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099989949.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.709 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds