Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46757 * 124.34979 * 2 1 4 4 C 1.54487 * 105.47204 * 162.98684 * 3 2 1 5 5 C 1.54622 * 101.76434 * 25.41597 * 4 3 2 6 6 H 1.09003 * 110.48625 * 94.01744 * 5 4 3 7 7 C 1.52999 * 110.48343 * 216.52211 * 5 4 3 8 8 C 1.50700 * 109.47376 * 185.00114 * 7 5 4 9 9 O 1.21283 * 119.99553 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00274 * 180.02562 * 8 7 5 11 11 C 1.46507 * 119.99983 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47086 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.55486 * 304.87525 * 12 11 10 14 14 C 1.52879 * 109.58061 * 184.88261 * 12 11 10 15 15 N 1.47160 * 108.60487 * 187.92217 * 14 12 11 16 16 C 1.36929 * 120.98378 * 230.49953 * 15 14 12 17 17 H 1.08003 * 120.00151 * 153.61513 * 16 15 14 18 18 C 1.38810 * 120.00162 * 333.61776 * 16 15 14 19 19 N 1.31617 * 119.99791 * 343.21923 * 18 16 15 20 20 Si 1.86799 * 120.00356 * 163.21702 * 18 16 15 21 21 H 1.48501 * 109.47430 * 270.00457 * 20 18 16 22 22 H 1.48504 * 109.46831 * 30.00305 * 20 18 16 23 23 H 1.48497 * 109.47241 * 150.00026 * 20 18 16 24 24 C 1.47156 * 118.03243 * 50.22807 * 15 14 12 25 25 C 1.53291 * 108.38843 * 309.71321 * 24 15 14 26 26 O 1.42963 * 109.51188 * 65.00074 * 12 11 10 27 27 C 1.34423 * 124.34790 * 179.97438 * 2 1 3 28 28 O 1.21284 * 124.94478 * 0.44383 * 27 2 1 29 29 H 1.08994 * 109.47103 * 90.00025 * 1 2 3 30 30 H 1.09003 * 109.47088 * 209.99906 * 1 2 3 31 31 H 1.08997 * 109.46994 * 329.99453 * 1 2 3 32 32 H 1.08996 * 110.24716 * 43.98853 * 3 2 1 33 33 H 1.09001 * 110.31978 * 282.01892 * 3 2 1 34 34 H 1.08998 * 110.96704 * 267.29008 * 4 3 2 35 35 H 1.09004 * 111.00151 * 143.55241 * 4 3 2 36 36 H 1.09006 * 109.47372 * 65.00188 * 7 5 4 37 37 H 1.08998 * 109.47566 * 305.00322 * 7 5 4 38 38 H 0.97003 * 120.00161 * 359.97438 * 10 8 7 39 39 H 1.09007 * 109.47034 * 59.99984 * 11 10 8 40 40 H 1.08998 * 109.47290 * 300.00199 * 11 10 8 41 41 H 1.09007 * 109.46646 * 180.12382 * 13 12 11 42 42 H 1.08996 * 109.47206 * 300.12727 * 13 12 11 43 43 H 1.09002 * 109.46606 * 60.12850 * 13 12 11 44 44 H 1.08996 * 109.61652 * 68.10756 * 14 12 11 45 45 H 1.08995 * 109.52423 * 307.68828 * 14 12 11 46 46 H 0.97000 * 120.00308 * 179.97438 * 19 18 16 47 47 H 1.09002 * 109.67829 * 69.44109 * 24 15 14 48 48 H 1.08994 * 109.67765 * 189.94814 * 24 15 14 49 49 H 1.08995 * 109.51676 * 172.22447 * 25 24 15 50 50 H 1.09002 * 109.51433 * 292.38195 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7010 0.7486 0.4356 5 6 3.6897 -0.7379 0.0100 6 1 4.1216 -0.8533 -0.9842 7 6 4.4518 -1.5914 1.0257 8 6 4.5323 -3.0118 0.5285 9 8 4.0293 -3.3118 -0.5335 10 7 5.1624 -3.9487 1.2643 11 6 5.2402 -5.3296 0.7811 12 6 6.0023 -6.1831 1.7968 13 6 7.3720 -5.5569 2.0667 14 6 6.1909 -7.5947 1.2408 15 7 6.7521 -8.4461 2.3019 16 6 7.8596 -9.2184 2.0740 17 1 8.5060 -9.4912 2.8951 18 6 8.1516 -9.6508 0.7877 19 7 7.2244 -9.6128 -0.1457 20 14 9.8604 -10.2866 0.3813 21 1 10.7136 -9.1585 -0.0712 22 1 10.4589 -10.9055 1.5912 23 1 9.7671 -11.3011 -0.6991 24 6 6.0914 -8.4383 3.6168 25 6 5.9109 -6.9816 4.0586 26 8 5.2596 -6.2510 3.0164 27 6 2.2234 -1.1098 0.0005 28 8 1.7946 -2.2443 -0.0067 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.8985 1.9382 0.7102 33 1 2.3309 1.6442 -0.9998 34 1 3.8269 0.8447 1.5140 35 1 4.4759 1.3008 -0.0962 36 1 3.9297 -1.5705 1.9824 37 1 5.4585 -1.1933 1.1525 38 1 5.5644 -3.7088 2.1139 39 1 5.7624 -5.3509 -0.1755 40 1 4.2333 -5.7275 0.6544 41 1 7.9146 -6.1673 2.7887 42 1 7.9377 -5.5055 1.1365 43 1 7.2393 -4.5519 2.4674 44 1 6.8753 -7.5657 0.3930 45 1 5.2274 -7.9924 0.9221 46 1 7.4285 -9.9145 -1.0447 47 1 5.1178 -8.9224 3.5413 48 1 6.7096 -8.9683 4.3413 49 1 5.3022 -6.9478 4.9620 50 1 6.8863 -6.5383 4.2591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108015321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -81.993576 kcal Electronic energy + Delta-G solvation = -30792.866801 eV Core-core repulsion = 26628.234602 eV Total energy + Delta-G solvation = -4164.632199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.80341 -39.47695 -38.53585 -36.43835 -34.86777 -34.28594 -33.91028 -31.71855 -31.22589 -30.00230 -27.91345 -27.20725 -26.62535 -25.93448 -24.61273 -23.19551 -21.87997 -21.20359 -20.26001 -19.36371 -18.62432 -17.40902 -17.02315 -16.70828 -16.52708 -15.80811 -15.69525 -15.13623 -15.07721 -14.80902 -14.34105 -14.05183 -14.00241 -13.83064 -13.70467 -13.48673 -13.15346 -12.96923 -12.86967 -12.76459 -12.52595 -12.48330 -12.34588 -12.02625 -11.74258 -11.64588 -11.53043 -11.23916 -11.15901 -10.98339 -10.78951 -10.64676 -10.26488 -10.21701 -9.95295 -9.73587 -9.54290 -9.41747 -8.98592 -8.90183 -8.62986 -8.51439 -6.71426 -5.81800 -3.25553 2.59169 2.81650 3.00449 3.34933 3.41794 3.43824 3.45741 4.09295 4.12027 4.31285 4.41795 4.45864 4.67729 4.88208 4.94064 5.02675 5.13463 5.19945 5.21634 5.22771 5.35438 5.38551 5.44084 5.45803 5.53892 5.55447 5.58043 5.72840 5.79888 5.94810 5.97710 6.10904 6.16139 6.21310 6.32662 6.39209 6.52021 6.64569 6.76841 6.85055 6.86975 6.93577 7.11418 7.51609 7.72766 7.84957 7.94295 8.18381 8.35506 8.60020 9.13225 9.76396 10.33959 11.26109 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.002377 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.131653 B =11775.941533 C =12077.586772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.635 5.635 3 C 0.105 3.895 4 C -0.130 4.130 5 C -0.107 4.107 6 H 0.117 0.883 7 C -0.123 4.123 8 C 0.505 3.495 9 O -0.522 6.522 10 N -0.722 5.722 11 C 0.142 3.858 12 C 0.079 3.921 13 C -0.161 4.161 14 C 0.159 3.841 15 N -0.591 5.591 16 C -0.254 4.254 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.279 1.279 23 H -0.291 1.291 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.383 6.383 27 C 0.516 3.484 28 O -0.495 6.495 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.398 0.602 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.041 0.959 44 H 0.096 0.904 45 H 0.029 0.971 46 H 0.256 0.744 47 H 0.025 0.975 48 H 0.061 0.939 49 H 0.079 0.921 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.426 25.041 4.339 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.372 5.372 3 C -0.018 4.018 4 C -0.168 4.168 5 C -0.129 4.129 6 H 0.135 0.865 7 C -0.164 4.164 8 C 0.290 3.710 9 O -0.397 6.397 10 N -0.375 5.375 11 C 0.018 3.982 12 C 0.038 3.962 13 C -0.218 4.218 14 C 0.033 3.967 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.205 1.205 23 H -0.217 1.217 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.303 6.303 27 C 0.302 3.698 28 O -0.367 6.367 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.233 0.767 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.114 0.886 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.079 0.921 49 H 0.097 0.903 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.281 24.162 3.401 25.463 hybrid contribution 1.209 -0.342 0.139 1.264 sum -6.071 23.820 3.539 24.835 Atomic orbital electron populations 1.21487 0.78299 1.02876 1.01718 1.48196 1.06314 1.07381 1.75301 1.22030 0.90653 0.87473 1.01694 1.22714 0.96685 0.94638 1.02754 1.21721 0.94218 0.94726 1.02194 0.86515 1.21517 1.02267 0.93041 0.99567 1.20348 0.78368 0.87037 0.85201 1.90746 1.44630 1.81771 1.22551 1.45964 1.57849 1.09530 1.24154 1.21273 1.01232 0.79512 0.96161 1.22460 0.90239 0.98302 0.85210 1.22203 0.97600 0.99052 1.02970 1.21207 0.98756 0.84457 0.92326 1.43990 1.31630 1.48511 1.07323 1.19162 0.99333 1.26061 0.93774 0.91421 1.25048 0.97879 0.99102 0.97556 1.70021 1.31129 1.50309 1.03012 0.86276 0.84259 0.78273 0.77877 1.21394 1.20454 1.21691 1.21594 0.96611 0.93937 0.89591 1.23027 0.96844 0.93772 0.89571 1.87844 1.45897 1.74481 1.22063 1.20754 0.88809 0.84419 0.75804 1.90816 1.77906 1.20628 1.47340 0.92845 0.90745 0.91317 0.90508 0.91235 0.89687 0.88898 0.88914 0.88047 0.76701 0.90251 0.90988 0.90888 0.91919 0.93989 0.88592 0.95308 0.93426 0.95664 0.92090 0.90264 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 10.96 59.85 0.66 1.44 16 2 N -0.63 -6.12 3.33 -180.29 -0.60 -6.72 16 3 C 0.10 0.59 7.35 -3.12 -0.02 0.56 16 4 C -0.13 -0.68 6.70 -25.10 -0.17 -0.85 16 5 C -0.11 -1.05 2.54 -90.64 -0.23 -1.28 16 6 H 0.12 1.25 7.90 -51.93 -0.41 0.84 16 7 C -0.12 -1.24 5.09 -27.88 -0.14 -1.38 16 8 C 0.51 7.81 7.29 -10.99 -0.08 7.73 16 9 O -0.52 -10.38 14.04 -15.87 -0.22 -10.60 16 10 N -0.72 -10.99 5.19 -60.29 -0.31 -11.30 16 11 C 0.14 2.62 4.85 -4.04 -0.02 2.60 16 12 C 0.08 1.52 0.78 -90.68 -0.07 1.45 16 13 C -0.16 -2.78 7.85 37.16 0.29 -2.49 16 14 C 0.16 3.82 4.08 -3.74 -0.02 3.81 16 15 N -0.59 -14.67 2.57 -172.08 -0.44 -15.11 16 16 C -0.25 -6.83 9.65 -15.06 -0.15 -6.98 16 17 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 18 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 19 N -0.90 -26.09 11.14 55.49 0.62 -25.47 16 20 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 C 0.11 2.29 6.74 -3.53 -0.02 2.27 16 25 C 0.05 0.81 6.60 37.31 0.25 1.06 16 26 O -0.38 -7.39 10.17 -35.23 -0.36 -7.74 16 27 C 0.52 6.91 7.29 -10.86 -0.08 6.84 16 28 O -0.49 -9.30 15.19 -15.87 -0.24 -9.54 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.71 7.93 -51.93 -0.41 0.30 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.35 7.91 -51.93 -0.41 -0.06 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.40 5.16 7.00 -40.82 -0.29 4.87 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.07 1.37 6.11 -51.93 -0.32 1.06 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.59 6.59 -51.93 -0.34 0.25 16 44 H 0.10 2.53 6.14 -51.93 -0.32 2.21 16 45 H 0.03 0.76 8.13 -51.93 -0.42 0.34 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 49 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 50 H 0.05 0.81 6.25 -51.93 -0.32 0.48 16 LS Contribution 391.07 15.07 5.89 5.89 Total: -1.00 -36.35 391.07 -8.86 -45.22 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -8.28 Total: 4.15 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 0.11 Total: 14.77 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.74 Total: -58.61 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.82 Total: -27.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.35 -8.86 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108015321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.776 kcal (2) G-P(sol) polarization free energy of solvation -36.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds