Wall clock time and date at job start Sat Apr 11 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.50792 * 2 1 4 4 N 1.46494 * 109.47381 * 60.10323 * 3 2 1 5 5 C 1.34780 * 120.00111 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99865 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00180 * 179.97438 * 5 4 3 8 8 H 1.09002 * 109.60156 * 264.27954 * 7 5 4 9 9 C 1.52990 * 109.60608 * 143.94862 * 7 5 4 10 10 C 1.51778 * 110.87853 * 326.70760 * 9 7 5 11 11 C 1.51788 * 113.81300 * 293.00249 * 10 9 7 12 12 C 1.53059 * 110.74916 * 66.81322 * 11 10 9 13 13 C 1.51427 * 108.49285 * 275.08304 * 12 11 10 14 14 O 1.21286 * 119.88983 * 251.19607 * 13 12 11 15 15 N 1.33623 * 120.28138 * 71.34999 * 13 12 11 16 16 C 1.53293 * 109.55717 * 239.87128 * 2 1 3 17 17 N 1.47150 * 108.38238 * 292.35110 * 16 2 1 18 18 C 1.36946 * 120.97844 * 129.48678 * 17 16 2 19 19 H 1.08004 * 119.99597 * 206.17736 * 18 17 16 20 20 C 1.38805 * 120.00329 * 26.17714 * 18 17 16 21 21 N 1.31630 * 119.99824 * 14.74234 * 20 18 17 22 22 Si 1.86796 * 120.00329 * 194.74386 * 20 18 17 23 23 H 1.48498 * 109.47237 * 59.99574 * 22 20 18 24 24 H 1.48500 * 109.47554 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46863 * 299.99875 * 22 20 18 26 26 C 1.47150 * 118.03946 * 309.46083 * 17 16 2 27 27 C 1.53298 * 108.38028 * 50.53476 * 26 17 16 28 28 O 1.42956 * 109.22548 * 307.70026 * 27 26 17 29 29 H 1.08999 * 109.47136 * 60.00186 * 1 2 3 30 30 H 1.09005 * 109.46594 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46965 * 299.99916 * 1 2 3 32 32 H 1.09007 * 109.46769 * 180.10187 * 3 2 1 33 33 H 1.08996 * 109.46989 * 300.09524 * 3 2 1 34 34 H 0.97003 * 120.00224 * 359.97438 * 4 3 2 35 35 H 1.08999 * 109.19333 * 87.06581 * 9 7 5 36 36 H 1.08994 * 109.19638 * 206.34581 * 9 7 5 37 37 H 1.09009 * 108.61792 * 54.12160 * 10 9 7 38 38 H 1.08997 * 108.61515 * 172.01892 * 10 9 7 39 39 H 1.09000 * 109.22226 * 187.14005 * 11 10 9 40 40 H 1.08995 * 109.22327 * 306.48800 * 11 10 9 41 41 H 1.09005 * 109.63491 * 34.78020 * 12 11 10 42 42 H 1.09001 * 109.63597 * 155.37718 * 12 11 10 43 43 H 0.97003 * 119.96963 * 180.31580 * 15 13 12 44 44 H 1.09006 * 109.68118 * 52.07228 * 16 2 1 45 45 H 1.08999 * 109.68168 * 172.62774 * 16 2 1 46 46 H 0.96997 * 119.99236 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.68261 * 290.81972 * 26 17 16 48 48 H 1.09003 * 109.68216 * 170.25652 * 26 17 16 49 49 H 1.08997 * 109.51367 * 187.77265 * 27 26 17 50 50 H 1.09002 * 109.55312 * 67.64964 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5552 2.1324 1.1973 5 6 1.8815 3.4226 1.4106 6 8 2.5778 4.0120 0.6114 7 6 1.3813 4.1328 2.6420 8 1 0.4733 4.6859 2.4016 9 6 2.4531 5.1004 3.1475 10 6 3.8439 4.5529 2.8839 11 6 4.1755 3.3090 3.6882 12 6 3.3042 2.1303 3.2477 13 6 1.9887 2.2000 3.9944 14 8 1.7433 1.3903 4.8635 15 7 1.0951 3.1482 3.6980 16 6 2.0432 -0.7251 -1.2493 17 7 1.6981 -2.1508 -1.1330 18 6 1.0646 -2.8083 -2.1537 19 1 0.4526 -3.6725 -1.9417 20 6 1.2092 -2.3640 -3.4608 21 7 2.1642 -1.5104 -3.7640 22 14 0.0485 -2.9775 -4.7896 23 1 -1.3462 -2.6086 -4.4375 24 1 0.4119 -2.3577 -6.0892 25 1 0.1573 -4.4545 -4.8986 26 6 2.0543 -2.8493 0.1122 27 6 1.5407 -2.0207 1.2952 28 8 2.0076 -0.6757 1.1658 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1310 1.4415 -0.0018 33 1 1.6766 1.9567 -0.8891 34 1 0.9979 1.6612 1.8364 35 1 2.3418 6.0570 2.6370 36 1 2.3241 5.2500 4.2194 37 1 3.9289 4.3145 1.8236 38 1 4.5736 5.3257 3.1252 39 1 5.2250 3.0548 3.5396 40 1 4.0015 3.5084 4.7455 41 1 3.1201 2.1915 2.1751 42 1 3.8095 1.1934 3.4826 43 1 0.2557 3.1914 4.1823 44 1 1.5716 -0.3045 -2.1376 45 1 3.1252 -0.6138 -1.3199 46 1 2.2654 -1.2003 -4.6775 47 1 3.1374 -2.9519 0.1786 48 1 1.5901 -3.8355 0.1256 49 1 1.9123 -2.4471 2.2269 50 1 0.4507 -2.0288 1.3004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108207376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:56 Heat of formation + Delta-G solvation = -68.539433 kcal Electronic energy + Delta-G solvation = -32757.002196 eV Core-core repulsion = 28592.953412 eV Total energy + Delta-G solvation = -4164.048784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68275 -39.29531 -38.75720 -36.33229 -35.27049 -34.43071 -34.12373 -31.92472 -31.27809 -31.06159 -27.99418 -27.56225 -26.36669 -25.53448 -24.41652 -23.23589 -22.09126 -21.04171 -20.32616 -19.86668 -18.65566 -17.94675 -17.58857 -17.13207 -16.19351 -16.00112 -15.62638 -15.39342 -15.04332 -14.89920 -14.40608 -14.28010 -14.13871 -13.90302 -13.87902 -13.55234 -13.50289 -13.12618 -12.83985 -12.81022 -12.68150 -12.46296 -11.99093 -11.69258 -11.61074 -11.22871 -11.19586 -11.02886 -10.95199 -10.85288 -10.73217 -10.68636 -10.33452 -10.29048 -10.10301 -9.96545 -9.85049 -9.58606 -9.30275 -9.06198 -8.83326 -8.57053 -6.76357 -5.86867 -3.31225 2.34773 2.49671 2.94927 3.12988 3.32532 3.38905 3.39101 4.19886 4.33898 4.35470 4.40921 4.49765 4.65815 4.81359 4.97154 5.07873 5.09621 5.30901 5.34386 5.41323 5.48257 5.49457 5.56804 5.64657 5.77447 5.82087 5.89681 5.91745 5.94557 5.95688 5.97987 6.05910 6.11516 6.20504 6.30499 6.40733 6.50367 6.53855 6.62328 6.72116 6.80570 6.92848 7.05848 7.40813 7.44947 7.67279 7.86127 8.05096 8.06631 8.30792 9.08660 9.71059 10.27949 11.20787 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.003444 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.555951 B = 8129.252849 C = 8747.655185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.076 3.924 3 C 0.135 3.865 4 N -0.717 5.717 5 C 0.507 3.493 6 O -0.525 6.525 7 C 0.123 3.877 8 H 0.125 0.875 9 C -0.114 4.114 10 C -0.156 4.156 11 C -0.110 4.110 12 C -0.175 4.175 13 C 0.525 3.475 14 O -0.540 6.540 15 N -0.728 5.728 16 C 0.160 3.840 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.904 5.904 22 Si 0.905 3.095 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.282 1.282 26 C 0.109 3.891 27 C 0.047 3.953 28 O -0.382 6.382 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.405 0.595 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.122 0.878 42 H 0.099 0.901 43 H 0.403 0.597 44 H 0.100 0.900 45 H 0.029 0.971 46 H 0.256 0.744 47 H 0.026 0.974 48 H 0.061 0.939 49 H 0.081 0.919 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 12.953 13.724 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 C 0.011 3.989 4 N -0.370 5.370 5 C 0.294 3.706 6 O -0.402 6.402 7 C 0.014 3.986 8 H 0.143 0.857 9 C -0.153 4.153 10 C -0.192 4.192 11 C -0.147 4.147 12 C -0.215 4.215 13 C 0.312 3.688 14 O -0.417 6.417 15 N -0.384 5.384 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.548 5.548 22 Si 0.734 3.266 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.209 1.209 26 C -0.017 4.017 27 C -0.031 4.031 28 O -0.301 6.301 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.242 0.758 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.139 0.861 42 H 0.118 0.882 43 H 0.241 0.759 44 H 0.118 0.882 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.769 13.033 13.418 18.722 hybrid contribution -1.384 -0.670 -0.417 1.593 sum -2.153 12.364 13.001 18.070 Atomic orbital electron populations 1.22203 0.95847 1.03341 1.00507 1.22570 0.93536 0.90510 0.89865 1.21473 1.00088 0.90308 0.86983 1.46430 1.52855 1.11636 1.26091 1.20434 0.80615 0.82253 0.87342 1.90684 1.36929 1.65951 1.46656 1.21587 1.01357 0.90210 0.85426 0.85744 1.21549 0.94081 0.98049 1.01643 1.21646 0.95997 0.97328 1.04278 1.21199 0.99858 0.93867 0.99818 1.22786 0.92990 1.01517 1.04210 1.20792 0.85892 0.79301 0.82793 1.90754 1.78395 1.39793 1.32723 1.46111 1.21560 1.31787 1.38973 1.21320 0.97780 0.83959 0.93592 1.43982 1.68645 1.04965 1.13817 1.19143 1.21769 1.11954 0.85414 0.91462 1.25035 0.97450 0.99889 0.97102 1.69977 1.30711 1.35428 1.18720 0.86337 0.80666 0.78474 0.81096 1.21008 1.21513 1.20863 1.21603 0.97573 0.95223 0.87287 1.23029 0.98280 0.82987 0.98759 1.87818 1.72850 1.25915 1.43560 0.91870 0.90731 0.94229 0.90469 0.89683 0.75792 0.89732 0.90607 0.87980 0.91619 0.90632 0.92210 0.86100 0.88199 0.75950 0.88240 0.95287 0.93377 0.95585 0.92064 0.90090 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 7.92 37.16 0.29 -2.43 16 2 C 0.08 1.37 0.76 -90.46 -0.07 1.30 16 3 C 0.13 2.12 4.54 -4.04 -0.02 2.10 16 4 N -0.72 -9.34 3.11 -60.29 -0.19 -9.53 16 5 C 0.51 6.10 4.19 -10.99 -0.05 6.06 16 6 O -0.53 -7.69 14.09 5.56 0.08 -7.62 16 7 C 0.12 1.03 3.79 -68.71 -0.26 0.77 16 8 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 9 C -0.11 -0.90 5.34 -27.36 -0.15 -1.05 16 10 C -0.16 -1.50 5.16 -27.97 -0.14 -1.65 16 11 C -0.11 -1.13 5.67 -27.32 -0.15 -1.28 16 12 C -0.17 -2.18 5.34 -27.50 -0.15 -2.33 16 13 C 0.52 6.72 5.60 -11.14 -0.06 6.66 16 14 O -0.54 -9.01 17.92 5.55 0.10 -8.91 16 15 N -0.73 -6.67 4.61 -54.50 -0.25 -6.92 16 16 C 0.16 3.61 4.11 -3.54 -0.01 3.60 16 17 N -0.59 -14.13 2.57 -171.83 -0.44 -14.57 16 18 C -0.25 -6.65 9.66 -15.06 -0.15 -6.80 16 19 H 0.07 1.73 7.87 -52.48 -0.41 1.32 16 20 C 0.00 0.10 5.00 -17.43 -0.09 0.02 16 21 N -0.90 -25.18 11.00 55.49 0.61 -24.57 16 22 Si 0.90 20.99 29.58 -169.99 -5.03 15.97 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 C 0.11 2.24 6.74 -3.53 -0.02 2.21 16 27 C 0.05 0.83 6.60 37.31 0.25 1.08 16 28 O -0.38 -6.94 9.97 -35.23 -0.35 -7.29 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.39 6.12 -51.93 -0.32 1.08 16 31 H 0.04 0.57 6.87 -51.93 -0.36 0.22 16 32 H 0.08 1.28 8.04 -51.92 -0.42 0.86 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.41 5.26 5.42 -40.82 -0.22 5.04 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 37 H 0.10 1.24 4.77 -51.92 -0.25 0.99 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.60 7.86 -51.93 -0.41 0.19 16 41 H 0.12 1.62 3.05 -51.93 -0.16 1.46 16 42 H 0.10 1.36 8.13 -51.93 -0.42 0.93 16 43 H 0.40 2.97 8.92 -40.82 -0.36 2.61 16 44 H 0.10 2.48 6.06 -51.93 -0.31 2.17 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 49 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.05 0.81 6.25 -51.93 -0.32 0.49 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -31.22 371.55 -8.39 -39.61 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -7.74 Total: 9.96 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.78 Total: 8.27 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.27 Total: -55.59 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.17 Total: -23.81 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.22 -8.39 -39.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108207376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.929 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds