Wall clock time and date at job start Sat Apr 11 2020 05:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.50792 * 2 1 4 4 N 1.46494 * 109.47381 * 60.10323 * 3 2 1 5 5 C 1.34780 * 120.00111 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99865 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00180 * 179.97438 * 5 4 3 8 8 H 1.09002 * 109.60156 * 264.27954 * 7 5 4 9 9 C 1.52990 * 109.60608 * 143.94862 * 7 5 4 10 10 C 1.51778 * 110.87853 * 326.70760 * 9 7 5 11 11 C 1.51788 * 113.81300 * 293.00249 * 10 9 7 12 12 C 1.53059 * 110.74916 * 66.81322 * 11 10 9 13 13 C 1.51427 * 108.49285 * 275.08304 * 12 11 10 14 14 O 1.21286 * 119.88983 * 251.19607 * 13 12 11 15 15 N 1.33623 * 120.28138 * 71.34999 * 13 12 11 16 16 C 1.53293 * 109.55717 * 239.87128 * 2 1 3 17 17 N 1.47150 * 108.38238 * 292.35110 * 16 2 1 18 18 C 1.36946 * 120.97844 * 129.48678 * 17 16 2 19 19 H 1.08004 * 119.99597 * 206.17736 * 18 17 16 20 20 C 1.38805 * 120.00329 * 26.17714 * 18 17 16 21 21 N 1.31630 * 119.99824 * 14.74234 * 20 18 17 22 22 Si 1.86796 * 120.00329 * 194.74386 * 20 18 17 23 23 H 1.48498 * 109.47237 * 59.99574 * 22 20 18 24 24 H 1.48500 * 109.47554 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46863 * 299.99875 * 22 20 18 26 26 C 1.47150 * 118.03946 * 309.46083 * 17 16 2 27 27 C 1.53298 * 108.38028 * 50.53476 * 26 17 16 28 28 O 1.42956 * 109.22548 * 307.70026 * 27 26 17 29 29 H 1.08999 * 109.47136 * 60.00186 * 1 2 3 30 30 H 1.09005 * 109.46594 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46965 * 299.99916 * 1 2 3 32 32 H 1.09007 * 109.46769 * 180.10187 * 3 2 1 33 33 H 1.08996 * 109.46989 * 300.09524 * 3 2 1 34 34 H 0.97003 * 120.00224 * 359.97438 * 4 3 2 35 35 H 1.08999 * 109.19333 * 87.06581 * 9 7 5 36 36 H 1.08994 * 109.19638 * 206.34581 * 9 7 5 37 37 H 1.09009 * 108.61792 * 54.12160 * 10 9 7 38 38 H 1.08997 * 108.61515 * 172.01892 * 10 9 7 39 39 H 1.09000 * 109.22226 * 187.14005 * 11 10 9 40 40 H 1.08995 * 109.22327 * 306.48800 * 11 10 9 41 41 H 1.09005 * 109.63491 * 34.78020 * 12 11 10 42 42 H 1.09001 * 109.63597 * 155.37718 * 12 11 10 43 43 H 0.97003 * 119.96963 * 180.31580 * 15 13 12 44 44 H 1.09006 * 109.68118 * 52.07228 * 16 2 1 45 45 H 1.08999 * 109.68168 * 172.62774 * 16 2 1 46 46 H 0.96997 * 119.99236 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.68261 * 290.81972 * 26 17 16 48 48 H 1.09003 * 109.68216 * 170.25652 * 26 17 16 49 49 H 1.08997 * 109.51367 * 187.77265 * 27 26 17 50 50 H 1.09002 * 109.55312 * 67.64964 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5552 2.1324 1.1973 5 6 1.8815 3.4226 1.4106 6 8 2.5778 4.0120 0.6114 7 6 1.3813 4.1328 2.6420 8 1 0.4733 4.6859 2.4016 9 6 2.4531 5.1004 3.1475 10 6 3.8439 4.5529 2.8839 11 6 4.1755 3.3090 3.6882 12 6 3.3042 2.1303 3.2477 13 6 1.9887 2.2000 3.9944 14 8 1.7433 1.3903 4.8635 15 7 1.0951 3.1482 3.6980 16 6 2.0432 -0.7251 -1.2493 17 7 1.6981 -2.1508 -1.1330 18 6 1.0646 -2.8083 -2.1537 19 1 0.4526 -3.6725 -1.9417 20 6 1.2092 -2.3640 -3.4608 21 7 2.1642 -1.5104 -3.7640 22 14 0.0485 -2.9775 -4.7896 23 1 -1.3462 -2.6086 -4.4375 24 1 0.4119 -2.3577 -6.0892 25 1 0.1573 -4.4545 -4.8986 26 6 2.0543 -2.8493 0.1122 27 6 1.5407 -2.0207 1.2952 28 8 2.0076 -0.6757 1.1658 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1310 1.4415 -0.0018 33 1 1.6766 1.9567 -0.8891 34 1 0.9979 1.6612 1.8364 35 1 2.3418 6.0570 2.6370 36 1 2.3241 5.2500 4.2194 37 1 3.9289 4.3145 1.8236 38 1 4.5736 5.3257 3.1252 39 1 5.2250 3.0548 3.5396 40 1 4.0015 3.5084 4.7455 41 1 3.1201 2.1915 2.1751 42 1 3.8095 1.1934 3.4826 43 1 0.2557 3.1914 4.1823 44 1 1.5716 -0.3045 -2.1376 45 1 3.1252 -0.6138 -1.3199 46 1 2.2654 -1.2003 -4.6775 47 1 3.1374 -2.9519 0.1786 48 1 1.5901 -3.8355 0.1256 49 1 1.9123 -2.4471 2.2269 50 1 0.4507 -2.0288 1.3004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108207376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:55 Heat of formation + Delta-G solvation = -90.671630 kcal Electronic energy + Delta-G solvation = -32757.961920 eV Core-core repulsion = 28592.953412 eV Total energy + Delta-G solvation = -4165.008508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.63671 -40.71835 -39.91364 -37.29228 -36.62555 -36.06051 -35.01187 -33.30743 -33.15893 -31.96184 -29.61346 -28.60449 -27.96011 -26.87711 -25.32150 -24.97377 -23.31969 -22.38206 -21.22759 -20.89611 -20.17330 -18.94284 -18.81926 -18.55117 -17.51674 -17.22121 -16.92668 -16.58569 -16.40803 -16.04894 -15.93580 -15.61632 -15.30605 -15.18099 -15.12134 -14.85135 -14.68139 -14.48348 -14.42540 -13.82940 -13.65153 -13.59469 -13.30894 -13.16966 -12.93274 -12.77348 -12.59046 -12.52457 -12.43888 -12.16948 -12.06647 -11.97237 -11.85687 -11.76740 -11.55536 -11.17767 -10.96475 -10.85521 -10.74827 -10.50553 -10.21524 -9.94484 -8.70940 -7.88661 -5.36503 1.39926 1.47180 1.48360 1.50737 1.55513 1.99985 2.23449 2.48499 2.77968 3.25688 3.43493 3.48008 3.50777 3.75801 3.89158 3.90260 3.99148 4.07128 4.09525 4.14890 4.31822 4.39080 4.42675 4.50641 4.56748 4.62751 4.68367 4.73692 4.77013 4.84438 4.93432 5.01622 5.03768 5.04660 5.08884 5.17810 5.19508 5.23784 5.24596 5.33521 5.54855 5.56731 5.61598 5.80210 6.01452 6.29206 6.36405 6.39302 7.05333 7.08263 7.15400 7.76298 8.30161 9.16409 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.003444 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.555951 B = 8129.252849 C = 8747.655185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.090 3.910 3 C 0.146 3.854 4 N -0.713 5.713 5 C 0.506 3.494 6 O -0.550 6.550 7 C 0.130 3.870 8 H 0.167 0.833 9 C -0.113 4.113 10 C -0.155 4.155 11 C -0.106 4.106 12 C -0.176 4.176 13 C 0.527 3.473 14 O -0.583 6.583 15 N -0.709 5.709 16 C 0.169 3.831 17 N -0.607 5.607 18 C -0.262 4.262 19 H 0.071 0.929 20 C -0.046 4.046 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.278 1.278 26 C 0.105 3.895 27 C 0.054 3.946 28 O -0.384 6.384 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.408 0.592 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.417 0.583 44 H 0.073 0.927 45 H -0.005 1.005 46 H 0.251 0.749 47 H 0.014 0.986 48 H 0.070 0.930 49 H 0.109 0.891 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 14.501 15.461 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.048 3.952 3 C 0.022 3.978 4 N -0.367 5.367 5 C 0.294 3.706 6 O -0.429 6.429 7 C 0.022 3.978 8 H 0.185 0.815 9 C -0.152 4.152 10 C -0.192 4.192 11 C -0.144 4.144 12 C -0.217 4.217 13 C 0.315 3.685 14 O -0.462 6.462 15 N -0.365 5.365 16 C 0.042 3.958 17 N -0.331 5.331 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.241 4.241 21 N -0.581 5.581 22 Si 0.795 3.205 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.204 1.204 26 C -0.021 4.021 27 C -0.024 4.024 28 O -0.303 6.303 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.245 0.755 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.257 0.743 44 H 0.091 0.909 45 H 0.013 0.987 46 H 0.060 0.940 47 H 0.032 0.968 48 H 0.088 0.912 49 H 0.127 0.873 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.604 14.608 15.185 21.231 hybrid contribution -0.727 -1.175 -0.958 1.681 sum -3.331 13.433 14.227 19.849 Atomic orbital electron populations 1.22093 0.94400 1.02633 1.01809 1.22272 0.94404 0.90985 0.87494 1.21113 0.99129 0.89311 0.88269 1.46292 1.53114 1.12163 1.25126 1.21097 0.79766 0.81524 0.88173 1.90692 1.37871 1.66346 1.47957 1.21798 1.03406 0.89497 0.83069 0.81542 1.21609 0.92328 0.98272 1.02945 1.21616 0.97943 0.97296 1.02354 1.21195 0.99543 0.93409 1.00245 1.22745 0.93639 1.01752 1.03537 1.20746 0.86178 0.79422 0.82128 1.90738 1.79215 1.41654 1.34639 1.45941 1.21282 1.30744 1.38485 1.21089 0.95502 0.84152 0.95053 1.44226 1.68662 1.05707 1.14483 1.19476 1.21542 1.11953 0.86211 0.91134 1.25753 0.98852 1.00479 0.99061 1.70149 1.32388 1.36911 1.18650 0.85350 0.79007 0.77926 0.78205 1.20137 1.22119 1.20381 1.21769 0.97026 0.96170 0.87111 1.23042 0.98809 0.82122 0.98389 1.87837 1.73143 1.26255 1.43069 0.92132 0.92373 0.91282 0.92014 0.90050 0.75497 0.87930 0.88819 0.90533 0.90193 0.90507 0.91508 0.87073 0.89987 0.74313 0.90924 0.98745 0.93985 0.96830 0.91183 0.87302 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 7.92 71.98 0.57 -4.39 16 2 C 0.09 3.23 0.76 -10.69 -0.01 3.22 16 3 C 0.15 4.67 4.54 86.38 0.39 5.06 16 4 N -0.71 -17.75 3.11 -463.06 -1.44 -19.19 16 5 C 0.51 11.26 4.19 87.66 0.37 11.63 16 6 O -0.55 -15.60 14.09 -3.04 -0.04 -15.64 16 7 C 0.13 1.72 3.79 44.11 0.17 1.88 16 8 H 0.17 0.97 8.14 -2.39 -0.02 0.95 16 9 C -0.11 -1.36 5.34 30.19 0.16 -1.20 16 10 C -0.16 -2.67 5.16 29.79 0.15 -2.52 16 11 C -0.11 -2.05 5.67 30.22 0.17 -1.88 16 12 C -0.18 -4.30 5.34 30.10 0.16 -4.14 16 13 C 0.53 12.61 5.60 88.07 0.49 13.10 16 14 O -0.58 -18.74 17.92 -3.05 -0.05 -18.80 16 15 N -0.71 -10.73 4.61 -445.38 -2.05 -12.78 16 16 C 0.17 7.94 4.11 86.35 0.35 8.29 16 17 N -0.61 -29.69 2.57 -697.53 -1.80 -31.49 16 18 C -0.26 -13.94 9.66 84.03 0.81 -13.13 16 19 H 0.07 3.63 7.87 -2.91 -0.02 3.61 16 20 C -0.05 -2.49 5.00 84.86 0.42 -2.06 16 21 N -0.93 -53.93 11.00 21.65 0.24 -53.69 16 22 Si 0.97 43.65 29.58 68.60 2.03 45.68 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 C 0.10 4.30 6.74 86.36 0.58 4.88 16 27 C 0.05 1.83 6.60 72.08 0.48 2.31 16 28 O -0.38 -13.77 9.97 -148.98 -1.49 -15.26 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 2.11 6.12 -2.38 -0.01 2.09 16 31 H 0.07 1.84 6.87 -2.39 -0.02 1.82 16 32 H 0.06 2.15 8.04 -2.38 -0.02 2.13 16 33 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.41 9.78 5.42 -92.71 -0.50 9.28 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.88 8.05 -2.39 -0.02 0.86 16 37 H 0.08 1.78 4.77 -2.38 -0.01 1.77 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.21 7.86 -2.39 -0.02 1.19 16 41 H 0.11 2.95 3.05 -2.38 -0.01 2.94 16 42 H 0.08 2.27 8.13 -2.39 -0.02 2.25 16 43 H 0.42 4.55 8.92 -92.71 -0.83 3.73 16 44 H 0.07 3.81 6.06 -2.38 -0.01 3.79 16 45 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 47 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 49 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 50 H 0.06 1.84 6.25 -2.39 -0.01 1.82 16 Total: -1.00 -70.24 371.55 0.32 -69.92 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.35 Total: 30.20 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 5.28 Total: 21.06 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -5.05 Total: -117.16 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -1.58 Total: -49.69 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -70.24 0.32 -69.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108207376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.750 kcal (2) G-P(sol) polarization free energy of solvation -70.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds