Wall clock time and date at job start Sat Apr 11 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00102 * 2 1 4 4 C 1.34776 * 119.99943 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99718 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00032 * 179.97438 * 4 2 1 7 7 H 1.09003 * 115.56155 * 44.99823 * 6 4 2 8 8 C 1.53069 * 117.51269 * 259.30078 * 6 4 2 9 9 C 1.52998 * 117.49819 * 190.68968 * 6 4 2 10 10 H 1.09000 * 117.49612 * 215.00189 * 9 6 4 11 11 C 1.50700 * 117.50085 * 359.97438 * 9 6 4 12 12 O 1.21284 * 119.99310 * 71.81589 * 11 9 6 13 13 N 1.34765 * 120.00597 * 251.81318 * 11 9 6 14 14 C 1.46494 * 120.00307 * 179.97438 * 13 11 9 15 15 C 1.53007 * 109.47248 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.51124 * 305.00012 * 15 14 13 17 17 C 1.53290 * 109.51384 * 184.89963 * 15 14 13 18 18 N 1.47262 * 108.32699 * 187.76615 * 17 15 14 19 19 C 1.36933 * 120.95706 * 230.48656 * 18 17 15 20 20 H 1.08000 * 120.00107 * 153.76922 * 19 18 17 21 21 C 1.38808 * 120.00594 * 333.76674 * 19 18 17 22 22 N 1.31623 * 119.99477 * 343.98177 * 21 19 18 23 23 Si 1.86799 * 120.00361 * 163.98004 * 21 19 18 24 24 H 1.48495 * 109.46960 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47252 * 120.00104 * 23 21 19 26 26 H 1.48501 * 109.47186 * 240.00104 * 23 21 19 27 27 C 1.47155 * 118.05905 * 50.50775 * 18 17 15 28 28 C 1.53294 * 108.38463 * 309.46702 * 27 18 17 29 29 O 1.42957 * 109.51018 * 65.10311 * 15 14 13 30 30 H 1.09000 * 109.46979 * 269.99876 * 1 2 3 31 31 H 1.09006 * 109.47248 * 29.99439 * 1 2 3 32 32 H 1.08999 * 109.47421 * 149.99935 * 1 2 3 33 33 H 1.08998 * 109.47506 * 270.00616 * 3 2 1 34 34 H 1.09001 * 109.46990 * 30.00456 * 3 2 1 35 35 H 1.08995 * 109.47080 * 150.00178 * 3 2 1 36 36 H 1.09001 * 117.49535 * 145.03625 * 8 6 4 37 37 H 1.09005 * 117.51637 * 359.97438 * 8 6 4 38 38 H 0.97009 * 119.99960 * 0.02562 * 13 11 9 39 39 H 1.08994 * 109.47218 * 60.00190 * 14 13 11 40 40 H 1.08995 * 109.47521 * 299.99947 * 14 13 11 41 41 H 1.08998 * 109.46924 * 60.00131 * 16 15 14 42 42 H 1.08994 * 109.47384 * 299.99947 * 16 15 14 43 43 H 1.09006 * 109.46957 * 179.97438 * 16 15 14 44 44 H 1.09002 * 109.68481 * 307.44759 * 17 15 14 45 45 H 1.09004 * 109.68354 * 67.99712 * 17 15 14 46 46 H 0.97005 * 119.99876 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.68035 * 189.74217 * 27 18 17 48 48 H 1.09005 * 109.71002 * 69.20749 * 27 18 17 49 49 H 1.09003 * 109.51334 * 292.37797 * 28 27 18 50 50 H 1.09000 * 109.55159 * 172.24955 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6458 -1.1672 -0.0011 7 1 4.1164 -0.4720 0.6942 8 6 4.3524 -1.4190 -1.3354 9 6 4.3521 -2.5008 -0.2534 10 1 5.2872 -2.6831 0.2762 11 6 3.4876 -3.7138 -0.4817 12 8 2.8705 -3.8320 -1.5192 13 7 3.4002 -4.6673 0.4666 14 6 2.5594 -5.8462 0.2449 15 6 2.6362 -6.7646 1.4663 16 6 4.0989 -7.1054 1.7582 17 6 1.8559 -8.0542 1.1871 18 7 1.7873 -8.8332 2.4350 19 6 2.1377 -10.1567 2.4592 20 1 2.4918 -10.6049 3.3758 21 6 2.0376 -10.9225 1.3058 22 7 1.3256 -10.4884 0.2875 23 14 2.9134 -12.5690 1.1989 24 1 3.6405 -12.8262 2.4678 25 1 1.9165 -13.6463 0.9731 26 1 3.8789 -12.5437 0.0709 27 6 1.3310 -8.1479 3.6546 28 6 2.1371 -6.8536 3.8123 29 8 2.0649 -6.1032 2.5976 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8901 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 2.3791 1.5835 -1.0276 34 1 1.6084 2.0283 0.5139 35 1 3.1499 1.1384 0.5138 36 1 5.2876 -0.8894 -1.5174 37 1 3.7273 -1.5850 -2.2128 38 1 3.8935 -4.5726 1.2966 39 1 2.9111 -6.3828 -0.6362 40 1 1.5270 -5.5325 0.0911 41 1 4.6527 -6.1881 1.9584 42 1 4.5332 -7.6112 0.8960 43 1 4.1529 -7.7592 2.6287 44 1 0.8482 -7.8084 0.8521 45 1 2.3675 -8.6338 0.4187 46 1 1.2559 -11.0233 -0.5187 47 1 1.4949 -8.7902 4.5198 48 1 0.2703 -7.9116 3.5685 49 1 3.1774 -7.0967 4.0289 50 1 1.7233 -6.2634 4.6300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108216119.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:59 Heat of formation + Delta-G solvation = -48.035720 kcal Electronic energy + Delta-G solvation = -31211.330955 eV Core-core repulsion = 27048.171279 eV Total energy + Delta-G solvation = -4163.159676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63758 -39.30394 -38.51547 -36.15454 -35.59031 -34.67429 -34.18533 -31.54172 -31.17782 -28.70405 -27.87205 -26.96812 -26.52035 -25.77660 -23.70195 -23.32623 -23.11922 -21.04386 -20.12612 -19.20867 -18.54055 -17.91256 -17.00790 -16.56797 -16.05586 -15.82574 -15.66170 -15.25851 -15.11457 -14.72524 -14.29415 -14.20989 -13.90423 -13.82173 -13.42786 -13.22442 -13.16202 -12.93597 -12.90482 -12.71636 -12.64379 -12.31657 -12.26517 -12.14470 -11.76433 -11.50761 -11.12522 -10.96427 -10.88571 -10.76257 -10.70335 -10.59244 -10.23239 -10.17776 -9.91699 -9.89181 -9.53064 -9.39575 -8.92806 -8.88393 -8.51966 -8.48703 -6.68013 -5.79021 -3.22983 2.35227 2.63974 2.99000 3.35865 3.41560 3.44190 3.45941 3.84107 4.23514 4.36816 4.48291 4.50388 4.55031 4.67975 4.83745 4.97793 5.09224 5.12721 5.26687 5.28953 5.35223 5.39857 5.40499 5.48665 5.61722 5.63344 5.67311 5.76992 5.81584 5.98972 6.02118 6.17087 6.21463 6.22564 6.27623 6.47226 6.57089 6.69509 6.81717 6.90016 6.96166 7.11494 7.16285 7.56645 7.75189 7.96436 8.00837 8.07754 8.38294 8.71217 9.15913 9.79071 10.36821 11.28635 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.002708 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.524890 B =10335.675179 C =10755.616930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.623 5.623 3 C 0.081 3.919 4 C 0.531 3.469 5 O -0.499 6.499 6 C -0.168 4.168 7 H 0.132 0.868 8 C -0.121 4.121 9 C -0.159 4.159 10 H 0.130 0.870 11 C 0.553 3.447 12 O -0.537 6.537 13 N -0.711 5.711 14 C 0.146 3.854 15 C 0.079 3.921 16 C -0.161 4.161 17 C 0.160 3.840 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.068 0.932 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.903 3.097 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.288 1.288 27 C 0.110 3.890 28 C 0.046 3.954 29 O -0.381 6.381 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.397 0.603 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.097 0.903 46 H 0.255 0.745 47 H 0.060 0.940 48 H 0.025 0.975 49 H 0.047 0.953 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.153 24.747 1.291 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.359 5.359 3 C -0.062 4.062 4 C 0.318 3.682 5 O -0.372 6.372 6 C -0.189 4.189 7 H 0.150 0.850 8 C -0.158 4.158 9 C -0.181 4.181 10 H 0.148 0.852 11 C 0.339 3.661 12 O -0.414 6.414 13 N -0.362 5.362 14 C 0.022 3.978 15 C 0.038 3.962 16 C -0.218 4.218 17 C 0.034 3.966 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.086 0.914 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.215 1.215 27 C -0.017 4.017 28 C -0.032 4.032 29 O -0.301 6.301 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.232 0.768 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.115 0.885 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.043 0.957 49 H 0.065 0.935 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.221 24.125 0.388 24.917 hybrid contribution 0.712 -0.887 0.533 1.256 sum 6.933 23.238 0.922 24.268 Atomic orbital electron populations 1.21626 0.78913 1.03188 1.01847 1.47590 1.07039 1.06117 1.75161 1.21780 0.97217 0.85292 1.01896 1.19663 0.88441 0.83495 0.76624 1.90853 1.69192 1.30300 1.46888 1.22279 0.92531 1.00449 1.03650 0.84991 1.23019 1.01914 0.98830 0.92074 1.22330 1.00997 0.89381 1.05346 0.85193 1.19030 0.80884 0.82463 0.83745 1.90658 1.45378 1.77915 1.27487 1.45713 1.49110 1.21733 1.19611 1.21235 0.95644 0.84684 0.96243 1.22540 0.93645 0.94395 0.85623 1.22195 0.95781 1.00378 1.03451 1.21319 0.97213 0.87886 0.90217 1.44046 1.76357 1.07295 1.03842 1.19199 1.36894 0.85105 0.96912 0.91423 1.25054 0.98801 0.97831 0.97995 1.70026 1.40077 1.38571 1.05893 0.86217 0.79185 0.83732 0.77600 1.20303 1.21687 1.21499 1.21589 0.95931 0.92780 0.91383 1.23020 0.99637 0.94190 0.86386 1.87869 1.81327 1.43763 1.17106 0.92770 0.91395 0.90305 0.92545 0.91151 0.90935 0.86954 0.86974 0.76849 0.90445 0.90917 0.94026 0.91932 0.90935 0.95321 0.88486 0.93510 0.92151 0.95715 0.93509 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.44 59.84 0.62 1.43 16 2 N -0.62 -6.20 3.27 -189.52 -0.62 -6.82 16 3 C 0.08 0.44 10.26 59.85 0.61 1.05 16 4 C 0.53 7.02 7.39 -10.99 -0.08 6.94 16 5 O -0.50 -9.22 13.15 -14.76 -0.19 -9.41 16 6 C -0.17 -1.61 5.02 -91.74 -0.46 -2.07 16 7 H 0.13 0.79 6.90 -51.93 -0.36 0.44 16 8 C -0.12 -1.10 9.75 -26.69 -0.26 -1.36 16 9 C -0.16 -1.78 6.19 -91.77 -0.57 -2.35 16 10 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 11 C 0.55 9.21 5.32 -10.99 -0.06 9.15 16 12 O -0.54 -11.12 15.30 -14.76 -0.23 -11.35 16 13 N -0.71 -11.78 5.19 -60.30 -0.31 -12.09 16 14 C 0.15 2.84 4.85 -4.04 -0.02 2.82 16 15 C 0.08 1.59 0.78 -90.47 -0.07 1.52 16 16 C -0.16 -2.89 7.86 37.16 0.29 -2.60 16 17 C 0.16 3.94 4.11 -3.48 -0.01 3.92 16 18 N -0.59 -14.96 2.57 -171.74 -0.44 -15.40 16 19 C -0.25 -6.86 9.65 -15.06 -0.15 -7.01 16 20 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 21 C 0.00 0.05 4.97 -17.43 -0.09 -0.03 16 22 N -0.90 -26.35 11.08 55.49 0.61 -25.73 16 23 Si 0.90 21.69 29.58 -169.99 -5.03 16.67 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.11 2.36 6.74 -3.53 -0.02 2.33 16 28 C 0.05 0.84 6.60 37.31 0.25 1.09 16 29 O -0.38 -7.70 10.17 -35.23 -0.36 -8.06 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.08 0.94 7.42 -51.93 -0.39 0.56 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.26 8.07 -51.93 -0.42 -0.15 16 35 H 0.07 0.29 6.19 -51.93 -0.32 -0.03 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.11 1.31 7.67 -51.93 -0.40 0.91 16 38 H 0.40 5.77 6.99 -40.82 -0.29 5.48 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 40 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.04 0.62 6.58 -51.93 -0.34 0.28 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.41 6.11 -51.93 -0.32 1.09 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 2.61 6.11 -51.93 -0.32 2.29 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 48 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.05 0.83 6.25 -51.93 -0.32 0.50 16 50 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 393.51 15.07 5.93 5.93 Total: -1.00 -36.54 393.51 -8.73 -45.27 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.08 Total: 6.16 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: -0.01 Total: 14.84 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.76 Total: -60.05 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.78 Total: -28.82 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.54 -8.73 -45.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108216119.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.770 kcal (2) G-P(sol) polarization free energy of solvation -36.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds