Wall clock time and date at job start Sat Apr 11 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00102 * 2 1 4 4 C 1.34776 * 119.99943 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99718 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00032 * 179.97438 * 4 2 1 7 7 H 1.09003 * 115.56155 * 44.99823 * 6 4 2 8 8 C 1.53069 * 117.51269 * 259.30078 * 6 4 2 9 9 C 1.52998 * 117.49819 * 190.68968 * 6 4 2 10 10 H 1.09000 * 117.49612 * 215.00189 * 9 6 4 11 11 C 1.50700 * 117.50085 * 359.97438 * 9 6 4 12 12 O 1.21284 * 119.99310 * 71.81589 * 11 9 6 13 13 N 1.34765 * 120.00597 * 251.81318 * 11 9 6 14 14 C 1.46494 * 120.00307 * 179.97438 * 13 11 9 15 15 C 1.53007 * 109.47248 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.51124 * 305.00012 * 15 14 13 17 17 C 1.53290 * 109.51384 * 184.89963 * 15 14 13 18 18 N 1.47262 * 108.32699 * 187.76615 * 17 15 14 19 19 C 1.36933 * 120.95706 * 230.48656 * 18 17 15 20 20 H 1.08000 * 120.00107 * 153.76922 * 19 18 17 21 21 C 1.38808 * 120.00594 * 333.76674 * 19 18 17 22 22 N 1.31623 * 119.99477 * 343.98177 * 21 19 18 23 23 Si 1.86799 * 120.00361 * 163.98004 * 21 19 18 24 24 H 1.48495 * 109.46960 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47252 * 120.00104 * 23 21 19 26 26 H 1.48501 * 109.47186 * 240.00104 * 23 21 19 27 27 C 1.47155 * 118.05905 * 50.50775 * 18 17 15 28 28 C 1.53294 * 108.38463 * 309.46702 * 27 18 17 29 29 O 1.42957 * 109.51018 * 65.10311 * 15 14 13 30 30 H 1.09000 * 109.46979 * 269.99876 * 1 2 3 31 31 H 1.09006 * 109.47248 * 29.99439 * 1 2 3 32 32 H 1.08999 * 109.47421 * 149.99935 * 1 2 3 33 33 H 1.08998 * 109.47506 * 270.00616 * 3 2 1 34 34 H 1.09001 * 109.46990 * 30.00456 * 3 2 1 35 35 H 1.08995 * 109.47080 * 150.00178 * 3 2 1 36 36 H 1.09001 * 117.49535 * 145.03625 * 8 6 4 37 37 H 1.09005 * 117.51637 * 359.97438 * 8 6 4 38 38 H 0.97009 * 119.99960 * 0.02562 * 13 11 9 39 39 H 1.08994 * 109.47218 * 60.00190 * 14 13 11 40 40 H 1.08995 * 109.47521 * 299.99947 * 14 13 11 41 41 H 1.08998 * 109.46924 * 60.00131 * 16 15 14 42 42 H 1.08994 * 109.47384 * 299.99947 * 16 15 14 43 43 H 1.09006 * 109.46957 * 179.97438 * 16 15 14 44 44 H 1.09002 * 109.68481 * 307.44759 * 17 15 14 45 45 H 1.09004 * 109.68354 * 67.99712 * 17 15 14 46 46 H 0.97005 * 119.99876 * 179.97438 * 22 21 19 47 47 H 1.08994 * 109.68035 * 189.74217 * 27 18 17 48 48 H 1.09005 * 109.71002 * 69.20749 * 27 18 17 49 49 H 1.09003 * 109.51334 * 292.37797 * 28 27 18 50 50 H 1.09000 * 109.55159 * 172.24955 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6458 -1.1672 -0.0011 7 1 4.1164 -0.4720 0.6942 8 6 4.3524 -1.4190 -1.3354 9 6 4.3521 -2.5008 -0.2534 10 1 5.2872 -2.6831 0.2762 11 6 3.4876 -3.7138 -0.4817 12 8 2.8705 -3.8320 -1.5192 13 7 3.4002 -4.6673 0.4666 14 6 2.5594 -5.8462 0.2449 15 6 2.6362 -6.7646 1.4663 16 6 4.0989 -7.1054 1.7582 17 6 1.8559 -8.0542 1.1871 18 7 1.7873 -8.8332 2.4350 19 6 2.1377 -10.1567 2.4592 20 1 2.4918 -10.6049 3.3758 21 6 2.0376 -10.9225 1.3058 22 7 1.3256 -10.4884 0.2875 23 14 2.9134 -12.5690 1.1989 24 1 3.6405 -12.8262 2.4678 25 1 1.9165 -13.6463 0.9731 26 1 3.8789 -12.5437 0.0709 27 6 1.3310 -8.1479 3.6546 28 6 2.1371 -6.8536 3.8123 29 8 2.0649 -6.1032 2.5976 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8901 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 2.3791 1.5835 -1.0276 34 1 1.6084 2.0283 0.5139 35 1 3.1499 1.1384 0.5138 36 1 5.2876 -0.8894 -1.5174 37 1 3.7273 -1.5850 -2.2128 38 1 3.8935 -4.5726 1.2966 39 1 2.9111 -6.3828 -0.6362 40 1 1.5270 -5.5325 0.0911 41 1 4.6527 -6.1881 1.9584 42 1 4.5332 -7.6112 0.8960 43 1 4.1529 -7.7592 2.6287 44 1 0.8482 -7.8084 0.8521 45 1 2.3675 -8.6338 0.4187 46 1 1.2559 -11.0233 -0.5187 47 1 1.4949 -8.7902 4.5198 48 1 0.2703 -7.9116 3.5685 49 1 3.1774 -7.0967 4.0289 50 1 1.7233 -6.2634 4.6300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108216119.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:58 Heat of formation + Delta-G solvation = -74.778932 kcal Electronic energy + Delta-G solvation = -31212.490628 eV Core-core repulsion = 27048.171279 eV Total energy + Delta-G solvation = -4164.319349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.65557 -40.81455 -39.83662 -37.11579 -36.49775 -36.43693 -35.83551 -33.25955 -33.05952 -29.60510 -29.39166 -28.24145 -27.75219 -27.32347 -25.05864 -24.73076 -24.15661 -22.74611 -21.28751 -20.42357 -19.97853 -18.94187 -18.83252 -17.63807 -17.44691 -16.93813 -16.90637 -16.68473 -16.48593 -16.10501 -15.80066 -15.64526 -15.37532 -15.18440 -15.14131 -14.67903 -14.47431 -14.08308 -14.02278 -13.89007 -13.45970 -13.43422 -13.34478 -13.17632 -12.98968 -12.93053 -12.89345 -12.81780 -12.54257 -12.44078 -12.12112 -11.96890 -11.86820 -11.60510 -11.52615 -11.14468 -10.97802 -10.80625 -10.66404 -10.51443 -9.98528 -9.66006 -8.74299 -7.89967 -5.38474 1.43423 1.44918 1.46218 1.57280 1.70378 2.03694 2.27828 2.47780 2.78914 2.92108 3.24611 3.47722 3.52001 3.68681 3.76318 3.88625 4.01009 4.02391 4.09961 4.24605 4.35516 4.40579 4.42077 4.43915 4.47184 4.55622 4.62732 4.69227 4.72518 4.79063 4.81927 4.86120 4.88157 4.95503 4.98958 5.03844 5.09960 5.10664 5.18164 5.33936 5.50519 5.51674 5.54362 5.60091 6.28068 6.34853 6.37989 6.70164 7.04562 7.19087 7.46249 7.73866 8.29190 9.15990 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.002708 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.524890 B =10335.675179 C =10755.616930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.621 5.621 3 C 0.073 3.927 4 C 0.511 3.489 5 O -0.570 6.570 6 C -0.153 4.153 7 H 0.183 0.817 8 C -0.104 4.104 9 C -0.174 4.174 10 H 0.174 0.826 11 C 0.544 3.456 12 O -0.590 6.590 13 N -0.703 5.703 14 C 0.159 3.841 15 C 0.095 3.905 16 C -0.149 4.149 17 C 0.170 3.830 18 N -0.607 5.607 19 C -0.257 4.257 20 H 0.077 0.923 21 C -0.054 4.054 22 N -0.940 5.940 23 Si 0.971 3.029 24 H -0.260 1.260 25 H -0.295 1.295 26 H -0.290 1.290 27 C 0.102 3.898 28 C 0.052 3.948 29 O -0.389 6.389 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.040 0.960 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.163 0.837 37 H 0.077 0.923 38 H 0.410 0.590 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.064 0.936 44 H -0.017 1.017 45 H 0.069 0.931 46 H 0.250 0.750 47 H 0.076 0.924 48 H 0.008 0.992 49 H 0.065 0.935 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.720 27.742 3.506 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.354 5.354 3 C -0.069 4.069 4 C 0.300 3.700 5 O -0.449 6.449 6 C -0.174 4.174 7 H 0.200 0.800 8 C -0.142 4.142 9 C -0.195 4.195 10 H 0.191 0.809 11 C 0.333 3.667 12 O -0.471 6.471 13 N -0.354 5.354 14 C 0.034 3.966 15 C 0.054 3.946 16 C -0.207 4.207 17 C 0.043 3.957 18 N -0.331 5.331 19 C -0.387 4.387 20 H 0.095 0.905 21 C -0.249 4.249 22 N -0.586 5.586 23 Si 0.799 3.201 24 H -0.184 1.184 25 H -0.222 1.222 26 H -0.217 1.217 27 C -0.023 4.023 28 C -0.026 4.026 29 O -0.309 6.309 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.181 0.819 37 H 0.095 0.905 38 H 0.247 0.753 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.001 0.999 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.094 0.906 48 H 0.026 0.974 49 H 0.083 0.917 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.822 27.206 2.663 29.047 hybrid contribution -0.562 -1.729 -0.142 1.824 sum 9.261 25.477 2.522 27.225 Atomic orbital electron populations 1.21658 0.79338 1.02896 1.02002 1.47810 1.07299 1.07084 1.73248 1.22130 0.98094 0.83311 1.03320 1.20518 0.90340 0.83371 0.75766 1.90835 1.70820 1.32853 1.50345 1.22469 0.89989 0.99885 1.05021 0.79963 1.23148 1.03113 0.97546 0.90366 1.22428 1.01673 0.87270 1.08113 0.80853 1.20090 0.80578 0.83518 0.82552 1.90627 1.47705 1.79069 1.29660 1.45572 1.48544 1.20869 1.20462 1.20793 0.94213 0.85887 0.95734 1.22173 0.94516 0.91947 0.85934 1.22079 0.93885 1.01955 1.02741 1.21044 0.95129 0.89766 0.89748 1.44301 1.76654 1.07277 1.04864 1.19582 1.36000 0.85976 0.97130 0.90516 1.25883 0.99745 1.01502 0.97803 1.70218 1.41957 1.40028 1.06402 0.85149 0.77759 0.79211 0.77990 1.18445 1.22235 1.21678 1.21817 0.95572 0.94603 0.90336 1.23125 1.00287 0.92757 0.86387 1.87875 1.81558 1.43845 1.17586 0.92422 0.88085 0.94112 0.91425 0.89186 0.88639 0.81948 0.90455 0.75288 0.91724 0.94846 0.90158 0.92525 0.91733 0.99877 0.91301 0.94122 0.90566 0.97442 0.91714 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.57 10.44 127.77 1.33 2.91 16 2 N -0.62 -11.47 3.27 -871.90 -2.85 -14.33 16 3 C 0.07 0.50 10.26 127.77 1.31 1.81 16 4 C 0.51 13.24 7.39 87.66 0.65 13.89 16 5 O -0.57 -22.26 13.15 16.39 0.22 -22.05 16 6 C -0.15 -2.40 5.02 -11.52 -0.06 -2.46 16 7 H 0.18 1.01 6.90 -2.39 -0.02 0.99 16 8 C -0.10 -1.56 9.75 30.62 0.30 -1.27 16 9 C -0.17 -3.40 6.19 -11.54 -0.07 -3.47 16 10 H 0.17 1.85 8.14 -2.39 -0.02 1.83 16 11 C 0.54 18.35 5.32 87.66 0.47 18.82 16 12 O -0.59 -26.03 15.30 16.38 0.25 -25.78 16 13 N -0.70 -23.49 5.19 -463.08 -2.40 -25.89 16 14 C 0.16 6.64 4.85 86.38 0.42 7.06 16 15 C 0.10 3.94 0.78 -10.69 -0.01 3.94 16 16 C -0.15 -5.21 7.86 71.98 0.57 -4.64 16 17 C 0.17 8.89 4.11 86.33 0.36 9.24 16 18 N -0.61 -31.48 2.57 -697.26 -1.79 -33.27 16 19 C -0.26 -14.18 9.65 84.03 0.81 -13.37 16 20 H 0.08 4.03 7.88 -2.91 -0.02 4.01 16 21 C -0.05 -3.09 4.97 84.86 0.42 -2.67 16 22 N -0.94 -57.73 11.08 21.65 0.24 -57.49 16 23 Si 0.97 45.37 29.58 68.60 2.03 47.39 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 27 C 0.10 4.38 6.74 86.35 0.58 4.96 16 28 C 0.05 1.80 6.60 72.08 0.48 2.28 16 29 O -0.39 -15.61 10.17 -148.98 -1.52 -17.13 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.16 8.07 -2.38 -0.02 1.14 16 32 H 0.04 1.07 7.42 -2.39 -0.02 1.06 16 33 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.09 0.30 8.07 -2.39 -0.02 0.29 16 35 H 0.10 0.24 6.19 -2.39 -0.01 0.22 16 36 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 1.76 7.67 -2.38 -0.02 1.75 16 38 H 0.41 11.18 6.99 -92.70 -0.65 10.53 16 39 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 2.17 6.58 -2.39 -0.02 2.15 16 42 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.06 2.38 6.11 -2.38 -0.01 2.37 16 44 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 45 H 0.07 3.97 6.11 -2.38 -0.01 3.95 16 46 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 47 H 0.08 2.99 7.96 -2.39 -0.02 2.97 16 48 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 49 H 0.06 2.07 6.25 -2.39 -0.01 2.06 16 50 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -89.68 393.51 2.02 -87.66 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.30 Total: 23.85 kcal Atomic # 6 Polarization: 29.48 SS G_CDS: 7.55 Total: 37.03 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -6.81 Total: -130.98 kcal Atomic # 8 Polarization: -63.91 SS G_CDS: -1.05 Total: -64.96 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -89.68 2.02 -87.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108216119.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.879 kcal (2) G-P(sol) polarization free energy of solvation -89.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds