Wall clock time and date at job start Sat Apr 11 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.51185 * 2 1 4 4 N 1.46494 * 109.47496 * 60.09828 * 3 2 1 5 5 C 1.34773 * 120.00181 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00130 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.99865 * 180.02562 * 5 4 3 8 8 C 1.50696 * 109.46854 * 180.02562 * 7 5 4 9 9 O 1.21284 * 120.00562 * 359.97438 * 8 7 5 10 10 N 1.34782 * 120.00076 * 180.02562 * 8 7 5 11 11 C 1.46499 * 120.00238 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47134 * 179.97438 * 11 10 8 13 13 C 1.52999 * 117.50031 * 243.62348 * 12 11 10 14 14 C 1.52995 * 117.49760 * 174.99609 * 12 11 10 15 15 C 1.53292 * 109.55709 * 239.87245 * 2 1 3 16 16 N 1.47233 * 108.40299 * 292.35711 * 15 2 1 17 17 C 1.36938 * 121.03150 * 129.45891 * 16 15 2 18 18 H 1.07995 * 120.00241 * 206.17702 * 17 16 15 19 19 C 1.38816 * 119.99718 * 26.17954 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.89599 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.89669 * 19 17 16 22 22 H 1.48504 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47372 * 119.99555 * 21 19 17 24 24 H 1.48500 * 109.47051 * 240.00016 * 21 19 17 25 25 C 1.47151 * 117.98790 * 309.48233 * 16 15 2 26 26 C 1.53300 * 108.41429 * 50.51917 * 25 16 15 27 27 O 1.42962 * 109.22183 * 307.68047 * 26 25 16 28 28 H 1.09005 * 109.47540 * 299.90214 * 1 2 3 29 29 H 1.09009 * 109.47494 * 59.90123 * 1 2 3 30 30 H 1.09002 * 109.47512 * 179.89846 * 1 2 3 31 31 H 1.09004 * 109.47099 * 180.10558 * 3 2 1 32 32 H 1.09002 * 109.47319 * 300.09750 * 3 2 1 33 33 H 0.97006 * 119.99601 * 0.02562 * 4 3 2 34 34 H 1.08995 * 109.47039 * 300.00259 * 7 5 4 35 35 H 1.08995 * 109.46790 * 60.00559 * 7 5 4 36 36 H 0.97002 * 119.99728 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.47213 * 299.99977 * 11 10 8 38 38 H 1.09003 * 109.46921 * 59.99738 * 11 10 8 39 39 H 1.09002 * 115.54605 * 29.32783 * 12 11 10 40 40 H 1.08997 * 117.49802 * 359.97438 * 13 12 11 41 41 H 1.08999 * 117.49628 * 145.02236 * 13 12 11 42 42 H 1.08994 * 117.50156 * 214.97924 * 14 12 11 43 43 H 1.08998 * 117.50267 * 359.97438 * 14 12 11 44 44 H 1.09001 * 109.68446 * 52.07217 * 15 2 1 45 45 H 1.08991 * 109.68807 * 172.63033 * 15 2 1 46 46 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.67883 * 290.77953 * 25 16 15 48 48 H 1.08994 * 109.68171 * 170.26092 * 25 16 15 49 49 H 1.09004 * 109.51066 * 67.60375 * 26 25 16 50 50 H 1.09001 * 109.51236 * 187.70563 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 7 1.5551 2.1325 1.1973 5 6 1.8824 3.4223 1.4110 6 8 2.5788 4.0116 0.6119 7 6 1.3830 4.1322 2.6430 8 6 1.8863 5.5526 2.6429 9 8 2.5823 5.9494 1.7324 10 7 1.5637 6.3820 3.6552 11 6 2.0525 7.7630 3.6548 12 6 1.5456 8.4838 4.9057 13 6 0.6016 9.6706 4.7034 14 6 2.0452 9.9089 5.1510 15 6 2.0431 -0.7250 -1.2493 16 7 1.6979 -2.1516 -1.1335 17 6 1.0642 -2.8097 -2.1536 18 1 0.4526 -3.6740 -1.9410 19 6 1.2079 -2.3657 -3.4610 20 7 2.1882 -1.5450 -3.7733 21 14 0.0098 -2.9332 -4.7771 22 1 -0.9931 -3.8466 -4.1728 23 1 -0.6809 -1.7545 -5.3592 24 1 0.7512 -3.6501 -5.8455 25 6 2.0541 -2.8494 0.1121 26 6 1.5405 -2.0208 1.2952 27 8 2.0075 -0.6758 1.1658 28 1 -0.3634 0.5123 0.8909 29 1 -0.3634 0.5154 -0.8891 30 1 -0.3634 -1.0277 -0.0018 31 1 3.1310 1.4414 -0.0019 32 1 1.6766 1.9568 -0.8891 33 1 0.9984 1.6609 1.8366 34 1 0.2931 4.1332 2.6450 35 1 1.7476 3.6173 3.5318 36 1 1.0074 6.0646 4.3836 37 1 3.1425 7.7627 3.6518 38 1 1.6869 8.2776 2.7661 39 1 1.3799 7.8514 5.7779 40 1 0.3419 9.9383 3.6792 41 1 -0.1856 9.8192 5.4426 42 1 2.2077 10.2144 6.1845 43 1 2.7352 10.3330 4.4215 44 1 1.5715 -0.3045 -2.1376 45 1 3.1250 -0.6139 -1.3200 46 1 2.2884 -1.2345 -4.6868 47 1 3.1373 -2.9520 0.1785 48 1 1.5904 -3.8357 0.1259 49 1 0.4505 -2.0289 1.2994 50 1 1.9114 -2.4477 2.2270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108333076.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:10 Heat of formation + Delta-G solvation = -62.756861 kcal Electronic energy + Delta-G solvation = -29732.009974 eV Core-core repulsion = 25568.211941 eV Total energy + Delta-G solvation = -4163.798033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.32982 -39.34314 -38.53066 -37.67486 -34.86870 -34.36898 -34.19136 -32.01417 -31.26485 -30.65488 -27.95346 -27.27832 -26.29022 -25.26074 -23.23305 -22.87076 -21.59467 -21.40577 -20.82649 -19.99372 -18.69321 -17.38419 -17.36118 -16.94664 -16.31685 -16.06905 -15.77420 -15.39742 -15.09216 -14.87197 -14.63135 -14.38753 -14.31194 -14.02644 -13.57353 -13.51976 -13.49658 -13.31767 -12.94836 -12.73228 -12.52768 -12.11031 -12.00569 -11.87114 -11.71798 -11.57668 -11.19244 -11.01830 -10.98731 -10.82883 -10.66399 -10.66017 -10.31014 -10.23495 -10.13766 -9.96287 -9.56271 -9.32666 -9.24784 -9.03060 -8.72452 -8.54315 -6.74432 -5.84563 -3.28044 2.53826 2.69603 2.89608 3.28003 3.33393 3.41307 3.43201 3.54486 4.17488 4.25091 4.38665 4.42975 4.43502 4.52908 4.74399 4.87750 5.03474 5.11088 5.16482 5.17386 5.27686 5.34379 5.39639 5.42013 5.49307 5.52670 5.63255 5.68432 5.70369 5.91044 5.93925 6.05451 6.12080 6.15047 6.20047 6.33250 6.46770 6.59442 6.71535 6.78165 6.82327 7.07719 7.25680 7.47847 7.70723 7.74341 7.88218 8.12487 8.32637 8.50756 9.10476 9.73734 10.30951 11.23388 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.001934 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.735823 B =14471.628495 C =15034.479555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 C 0.142 3.858 4 N -0.720 5.720 5 C 0.507 3.493 6 O -0.501 6.501 7 C -0.165 4.165 8 C 0.511 3.489 9 O -0.490 6.490 10 N -0.736 5.736 11 C 0.152 3.848 12 C -0.170 4.170 13 C -0.177 4.177 14 C -0.171 4.171 15 C 0.159 3.841 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.400 0.600 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.399 0.601 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.030 0.970 46 H 0.255 0.745 47 H 0.025 0.975 48 H 0.061 0.939 49 H 0.048 0.952 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 15.589 21.010 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 C 0.018 3.982 4 N -0.374 5.374 5 C 0.290 3.710 6 O -0.374 6.374 7 C -0.208 4.208 8 C 0.295 3.705 9 O -0.361 6.361 10 N -0.391 5.391 11 C 0.028 3.972 12 C -0.189 4.189 13 C -0.214 4.214 14 C -0.209 4.209 15 C 0.032 3.968 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.217 1.217 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.304 6.304 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.234 0.766 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.048 0.952 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.498 16.445 19.641 26.008 hybrid contribution -1.329 -0.911 -0.105 1.615 sum -5.826 15.533 19.536 25.630 Atomic orbital electron populations 1.22201 0.95779 1.03164 1.00716 1.22548 0.93532 0.90719 0.89448 1.21322 0.99892 0.89731 0.87237 1.45935 1.54055 1.11405 1.25977 1.19866 0.81711 0.82159 0.87285 1.90863 1.35777 1.65151 1.45637 1.21581 1.04215 0.94624 1.00342 1.20068 0.81250 0.86968 0.82192 1.90886 1.34990 1.76066 1.34161 1.45964 1.55263 1.12164 1.25740 1.20836 0.99149 0.81185 0.96004 1.22464 1.05429 0.91363 0.99608 1.23105 0.93408 1.01936 1.02992 1.22962 0.97553 0.97547 1.02822 1.21310 0.97863 0.83888 0.93706 1.44020 1.68689 1.04943 1.13774 1.19193 1.21709 1.12085 0.85380 0.91372 1.25043 0.97306 1.00092 0.97104 1.70020 1.29255 1.36704 1.18482 0.86230 0.80735 0.78024 0.81823 1.20269 1.21460 1.21657 1.21595 0.97550 0.95219 0.87407 1.23029 0.98268 0.83182 0.98702 1.87810 1.72992 1.25753 1.43810 0.93934 0.91907 0.90867 0.90939 0.90153 0.76572 0.86275 0.86188 0.76750 0.91085 0.91346 0.87164 0.88439 0.88604 0.88422 0.88347 0.88541 0.95226 0.93440 0.95678 0.92086 0.93410 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 7.92 37.15 0.29 -2.39 16 2 C 0.08 1.45 0.76 -90.47 -0.07 1.38 16 3 C 0.14 2.47 4.82 -4.04 -0.02 2.45 16 4 N -0.72 -10.06 5.15 -60.29 -0.31 -10.37 16 5 C 0.51 7.50 7.82 -10.98 -0.09 7.41 16 6 O -0.50 -10.16 14.18 -18.95 -0.27 -10.43 16 7 C -0.16 -1.52 6.19 -29.03 -0.18 -1.70 16 8 C 0.51 6.08 7.82 -10.99 -0.09 6.00 16 9 O -0.49 -8.70 14.18 -18.96 -0.27 -8.97 16 10 N -0.74 -5.76 5.56 -60.29 -0.33 -6.09 16 11 C 0.15 1.21 5.96 -4.04 -0.02 1.19 16 12 C -0.17 -0.91 5.85 -90.62 -0.53 -1.44 16 13 C -0.18 -0.89 10.18 -26.73 -0.27 -1.16 16 14 C -0.17 -0.85 10.25 -26.73 -0.27 -1.13 16 15 C 0.16 3.71 4.12 -3.49 -0.01 3.69 16 16 N -0.59 -14.30 2.57 -171.77 -0.44 -14.74 16 17 C -0.25 -6.74 9.65 -15.06 -0.15 -6.89 16 18 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 19 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 20 N -0.90 -25.77 11.14 55.49 0.62 -25.16 16 21 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.11 2.21 6.73 -3.53 -0.02 2.18 16 26 C 0.05 0.78 6.60 37.31 0.25 1.02 16 27 O -0.38 -6.91 9.97 -35.23 -0.35 -7.26 16 28 H 0.04 0.57 6.87 -51.93 -0.36 0.22 16 29 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 30 H 0.07 1.34 6.12 -51.93 -0.32 1.02 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.40 4.58 7.20 -40.82 -0.29 4.29 16 34 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.40 1.74 8.40 -40.82 -0.34 1.39 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 39 H 0.11 0.46 8.04 -51.93 -0.42 0.04 16 40 H 0.10 0.52 8.03 -51.93 -0.42 0.11 16 41 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 49 H 0.05 0.77 6.25 -51.93 -0.32 0.45 16 50 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 400.05 15.07 6.03 6.03 Total: -1.00 -35.79 400.05 -9.86 -45.65 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.23 Total: 4.48 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -1.27 Total: 10.61 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.47 Total: -56.36 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.89 Total: -26.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.79 -9.86 -45.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108333076.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.108 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds