Wall clock time and date at job start Sat Apr 11 2020 05:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.51185 * 2 1 4 4 N 1.46494 * 109.47496 * 60.09828 * 3 2 1 5 5 C 1.34773 * 120.00181 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00130 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.99865 * 180.02562 * 5 4 3 8 8 C 1.50696 * 109.46854 * 180.02562 * 7 5 4 9 9 O 1.21284 * 120.00562 * 359.97438 * 8 7 5 10 10 N 1.34782 * 120.00076 * 180.02562 * 8 7 5 11 11 C 1.46499 * 120.00238 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47134 * 179.97438 * 11 10 8 13 13 C 1.52999 * 117.50031 * 243.62348 * 12 11 10 14 14 C 1.52995 * 117.49760 * 174.99609 * 12 11 10 15 15 C 1.53292 * 109.55709 * 239.87245 * 2 1 3 16 16 N 1.47233 * 108.40299 * 292.35711 * 15 2 1 17 17 C 1.36938 * 121.03150 * 129.45891 * 16 15 2 18 18 H 1.07995 * 120.00241 * 206.17702 * 17 16 15 19 19 C 1.38816 * 119.99718 * 26.17954 * 17 16 15 20 20 N 1.31615 * 120.00526 * 16.89599 * 19 17 16 21 21 Si 1.86806 * 119.99896 * 196.89669 * 19 17 16 22 22 H 1.48504 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47372 * 119.99555 * 21 19 17 24 24 H 1.48500 * 109.47051 * 240.00016 * 21 19 17 25 25 C 1.47151 * 117.98790 * 309.48233 * 16 15 2 26 26 C 1.53300 * 108.41429 * 50.51917 * 25 16 15 27 27 O 1.42962 * 109.22183 * 307.68047 * 26 25 16 28 28 H 1.09005 * 109.47540 * 299.90214 * 1 2 3 29 29 H 1.09009 * 109.47494 * 59.90123 * 1 2 3 30 30 H 1.09002 * 109.47512 * 179.89846 * 1 2 3 31 31 H 1.09004 * 109.47099 * 180.10558 * 3 2 1 32 32 H 1.09002 * 109.47319 * 300.09750 * 3 2 1 33 33 H 0.97006 * 119.99601 * 0.02562 * 4 3 2 34 34 H 1.08995 * 109.47039 * 300.00259 * 7 5 4 35 35 H 1.08995 * 109.46790 * 60.00559 * 7 5 4 36 36 H 0.97002 * 119.99728 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.47213 * 299.99977 * 11 10 8 38 38 H 1.09003 * 109.46921 * 59.99738 * 11 10 8 39 39 H 1.09002 * 115.54605 * 29.32783 * 12 11 10 40 40 H 1.08997 * 117.49802 * 359.97438 * 13 12 11 41 41 H 1.08999 * 117.49628 * 145.02236 * 13 12 11 42 42 H 1.08994 * 117.50156 * 214.97924 * 14 12 11 43 43 H 1.08998 * 117.50267 * 359.97438 * 14 12 11 44 44 H 1.09001 * 109.68446 * 52.07217 * 15 2 1 45 45 H 1.08991 * 109.68807 * 172.63033 * 15 2 1 46 46 H 0.97002 * 120.00383 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.67883 * 290.77953 * 25 16 15 48 48 H 1.08994 * 109.68171 * 170.26092 * 25 16 15 49 49 H 1.09004 * 109.51066 * 67.60375 * 26 25 16 50 50 H 1.09001 * 109.51236 * 187.70563 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 7 1.5551 2.1325 1.1973 5 6 1.8824 3.4223 1.4110 6 8 2.5788 4.0116 0.6119 7 6 1.3830 4.1322 2.6430 8 6 1.8863 5.5526 2.6429 9 8 2.5823 5.9494 1.7324 10 7 1.5637 6.3820 3.6552 11 6 2.0525 7.7630 3.6548 12 6 1.5456 8.4838 4.9057 13 6 0.6016 9.6706 4.7034 14 6 2.0452 9.9089 5.1510 15 6 2.0431 -0.7250 -1.2493 16 7 1.6979 -2.1516 -1.1335 17 6 1.0642 -2.8097 -2.1536 18 1 0.4526 -3.6740 -1.9410 19 6 1.2079 -2.3657 -3.4610 20 7 2.1882 -1.5450 -3.7733 21 14 0.0098 -2.9332 -4.7771 22 1 -0.9931 -3.8466 -4.1728 23 1 -0.6809 -1.7545 -5.3592 24 1 0.7512 -3.6501 -5.8455 25 6 2.0541 -2.8494 0.1121 26 6 1.5405 -2.0208 1.2952 27 8 2.0075 -0.6758 1.1658 28 1 -0.3634 0.5123 0.8909 29 1 -0.3634 0.5154 -0.8891 30 1 -0.3634 -1.0277 -0.0018 31 1 3.1310 1.4414 -0.0019 32 1 1.6766 1.9568 -0.8891 33 1 0.9984 1.6609 1.8366 34 1 0.2931 4.1332 2.6450 35 1 1.7476 3.6173 3.5318 36 1 1.0074 6.0646 4.3836 37 1 3.1425 7.7627 3.6518 38 1 1.6869 8.2776 2.7661 39 1 1.3799 7.8514 5.7779 40 1 0.3419 9.9383 3.6792 41 1 -0.1856 9.8192 5.4426 42 1 2.2077 10.2144 6.1845 43 1 2.7352 10.3330 4.4215 44 1 1.5715 -0.3045 -2.1376 45 1 3.1250 -0.6139 -1.3200 46 1 2.2884 -1.2345 -4.6868 47 1 3.1373 -2.9520 0.1785 48 1 1.5904 -3.8357 0.1259 49 1 0.4505 -2.0289 1.2994 50 1 1.9114 -2.4477 2.2270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108333076.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:09 Heat of formation + Delta-G solvation = -88.949791 kcal Electronic energy + Delta-G solvation = -29733.145785 eV Core-core repulsion = 25568.211941 eV Total energy + Delta-G solvation = -4164.933843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40802 -40.68785 -39.65996 -38.31494 -36.49437 -35.85681 -35.09308 -33.35932 -33.18718 -31.64393 -29.55014 -28.20066 -27.86326 -26.70621 -24.97192 -23.25436 -23.06681 -22.04930 -21.93412 -20.99961 -20.24584 -18.94074 -18.38405 -18.05863 -17.38958 -17.20188 -16.93113 -16.68050 -16.52427 -16.07758 -15.76749 -15.63223 -15.53015 -15.25395 -14.94935 -14.90363 -14.63666 -14.40097 -14.27494 -14.13656 -13.85946 -13.42593 -13.16689 -12.90897 -12.83161 -12.77066 -12.50953 -12.41776 -12.38808 -12.35144 -12.10814 -11.93208 -11.82639 -11.45701 -11.18150 -11.12861 -11.04802 -10.76630 -10.49682 -10.45022 -10.03091 -10.01793 -8.71593 -7.89397 -5.36289 1.44981 1.47199 1.57337 1.66362 1.77924 1.85153 2.44642 2.52817 2.81613 2.89934 3.25595 3.51383 3.58701 3.72279 3.91812 3.99262 4.03961 4.06205 4.13892 4.15889 4.28014 4.41684 4.46099 4.46842 4.49755 4.60910 4.66999 4.70409 4.73895 4.75360 4.81976 4.83325 5.00262 5.04561 5.06983 5.15551 5.21305 5.23139 5.26765 5.39196 5.45629 5.51646 5.55081 5.62222 6.29754 6.39427 6.59888 6.67433 7.06925 7.31638 7.45151 7.76835 8.30793 9.16312 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.001934 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.735823 B =14471.628495 C =15034.479555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.096 3.904 3 C 0.151 3.849 4 N -0.704 5.704 5 C 0.500 3.500 6 O -0.564 6.564 7 C -0.148 4.148 8 C 0.504 3.496 9 O -0.561 6.561 10 N -0.713 5.713 11 C 0.150 3.850 12 C -0.166 4.166 13 C -0.176 4.176 14 C -0.175 4.175 15 C 0.166 3.834 16 N -0.606 5.606 17 C -0.257 4.257 18 H 0.076 0.924 19 C -0.052 4.052 20 N -0.938 5.938 21 Si 0.966 3.034 22 H -0.261 1.261 23 H -0.292 1.292 24 H -0.296 1.296 25 C 0.100 3.900 26 C 0.053 3.947 27 O -0.383 6.383 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.417 0.583 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.420 0.580 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.065 0.935 45 H -0.012 1.012 46 H 0.249 0.751 47 H 0.010 0.990 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.622 15.172 24.993 30.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.055 3.945 3 C 0.026 3.974 4 N -0.358 5.358 5 C 0.286 3.714 6 O -0.441 6.441 7 C -0.190 4.190 8 C 0.290 3.710 9 O -0.437 6.437 10 N -0.368 5.368 11 C 0.026 3.974 12 C -0.184 4.184 13 C -0.213 4.213 14 C -0.212 4.212 15 C 0.039 3.961 16 N -0.331 5.331 17 C -0.386 4.386 18 H 0.094 0.906 19 C -0.248 4.248 20 N -0.585 5.585 21 Si 0.795 3.205 22 H -0.185 1.185 23 H -0.218 1.218 24 H -0.224 1.224 25 C -0.026 4.026 26 C -0.024 4.024 27 O -0.303 6.303 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.255 0.745 34 H 0.184 0.816 35 H 0.182 0.818 36 H 0.258 0.742 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.149 0.851 40 H 0.107 0.893 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.006 0.994 46 H 0.058 0.942 47 H 0.028 0.972 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.473 15.994 23.749 29.592 hybrid contribution -0.354 -0.816 -1.290 1.567 sum -7.828 15.178 22.459 28.214 Atomic orbital electron populations 1.22109 0.93602 1.02912 1.02324 1.22140 0.94844 0.90322 0.87200 1.20925 0.98345 0.89599 0.88538 1.45714 1.53838 1.11355 1.24934 1.20870 0.80420 0.81822 0.88261 1.90859 1.38576 1.66439 1.48208 1.21616 1.06722 0.92143 0.98516 1.20634 0.80315 0.88293 0.81790 1.90877 1.38350 1.77471 1.37014 1.45766 1.54263 1.11571 1.25203 1.20793 0.98250 0.81454 0.96868 1.22402 1.05689 0.91537 0.98802 1.23157 0.93769 1.01394 1.03004 1.23050 0.97517 0.97196 1.03461 1.21075 0.95208 0.84506 0.95330 1.44275 1.68664 1.05463 1.14662 1.19565 1.21147 1.11871 0.86049 0.90641 1.25814 0.98864 1.00807 0.99270 1.70198 1.31284 1.38587 1.18392 0.85218 0.78837 0.77469 0.79008 1.18481 1.21835 1.22357 1.21848 0.96955 0.96481 0.87274 1.23113 0.99240 0.81695 0.98344 1.87821 1.73353 1.26424 1.42663 0.89688 0.92932 0.91950 0.93543 0.91681 0.74453 0.81617 0.81778 0.74170 0.92819 0.93171 0.85053 0.89312 0.87102 0.87021 0.89123 0.91706 0.99359 0.94162 0.97214 0.90911 0.91819 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 7.92 71.98 0.57 -4.17 16 2 C 0.10 3.50 0.76 -10.70 -0.01 3.49 16 3 C 0.15 5.36 4.82 86.38 0.42 5.78 16 4 N -0.70 -18.30 5.15 -463.07 -2.39 -20.68 16 5 C 0.50 14.17 7.82 87.66 0.69 14.86 16 6 O -0.56 -23.68 14.18 20.43 0.29 -23.39 16 7 C -0.15 -2.17 6.19 29.10 0.18 -1.99 16 8 C 0.50 11.28 7.82 87.65 0.69 11.97 16 9 O -0.56 -20.62 14.18 20.40 0.29 -20.33 16 10 N -0.71 -9.54 5.56 -463.05 -2.57 -12.12 16 11 C 0.15 2.31 5.96 86.38 0.51 2.83 16 12 C -0.17 -1.44 5.85 -10.79 -0.06 -1.50 16 13 C -0.18 -1.45 10.18 30.60 0.31 -1.14 16 14 C -0.17 -1.49 10.25 30.60 0.31 -1.17 16 15 C 0.17 8.06 4.12 86.34 0.36 8.42 16 16 N -0.61 -29.72 2.57 -697.35 -1.79 -31.51 16 17 C -0.26 -13.68 9.65 84.03 0.81 -12.86 16 18 H 0.08 3.85 7.88 -2.91 -0.02 3.83 16 19 C -0.05 -2.90 4.95 84.86 0.42 -2.48 16 20 N -0.94 -56.22 11.14 21.65 0.24 -55.98 16 21 Si 0.97 44.46 29.59 68.60 2.03 46.49 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 25 C 0.10 3.95 6.73 86.36 0.58 4.53 16 26 C 0.05 1.62 6.60 72.08 0.48 2.09 16 27 O -0.38 -12.92 9.97 -148.98 -1.49 -14.41 16 28 H 0.08 1.92 6.87 -2.38 -0.02 1.90 16 29 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.06 2.11 6.12 -2.39 -0.01 2.10 16 31 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.42 7.77 7.20 -92.70 -0.67 7.10 16 34 H 0.17 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.16 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.42 1.93 8.40 -92.71 -0.78 1.15 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.96 7.87 -2.39 -0.02 0.94 16 39 H 0.13 0.61 8.04 -2.39 -0.02 0.59 16 40 H 0.09 0.89 8.03 -2.39 -0.02 0.87 16 41 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 3.55 6.14 -2.39 -0.01 3.54 16 45 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 49 H 0.06 1.79 6.25 -2.39 -0.01 1.77 16 50 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -86.14 400.05 0.37 -85.77 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.49 Total: 17.51 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: 6.25 Total: 28.64 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -6.51 Total: -120.29 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -0.91 Total: -58.12 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -86.14 0.37 -85.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108333076.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.178 kcal (2) G-P(sol) polarization free energy of solvation -86.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds