Wall clock time and date at job start Sat Apr 11 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99695 * 2 1 4 4 C 1.34768 * 120.00026 * 180.02562 * 2 1 3 5 5 O 1.21285 * 120.00187 * 3.60907 * 4 2 1 6 6 C 1.50694 * 120.00118 * 183.60602 * 4 2 1 7 7 C 1.50707 * 115.54926 * 69.91502 * 6 4 2 8 8 O 1.21273 * 119.99834 * 234.79015 * 7 6 4 9 9 N 1.34773 * 119.99883 * 54.78538 * 7 6 4 10 10 C 1.46505 * 120.00185 * 185.28491 * 9 7 6 11 11 C 1.52996 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.54979 * 60.13025 * 11 10 9 13 13 C 1.53299 * 109.50979 * 180.25172 * 11 10 9 14 14 N 1.47231 * 108.40215 * 172.23370 * 13 11 10 15 15 C 1.36933 * 121.03176 * 129.46677 * 14 13 11 16 16 H 1.07997 * 119.99946 * 218.98084 * 15 14 13 17 17 C 1.38816 * 119.99911 * 38.98192 * 15 14 13 18 18 N 1.31620 * 119.99680 * 18.70722 * 17 15 14 19 19 Si 1.86795 * 119.99870 * 198.70037 * 17 15 14 20 20 H 1.48502 * 109.47093 * 90.00269 * 19 17 15 21 21 H 1.48503 * 109.47128 * 210.00178 * 19 17 15 22 22 H 1.48493 * 109.47560 * 330.00195 * 19 17 15 23 23 C 1.47154 * 117.98420 * 309.48564 * 14 13 11 24 24 C 1.53295 * 108.41596 * 50.52419 * 23 14 13 25 25 O 1.42958 * 109.22371 * 307.67460 * 24 23 14 26 26 C 1.53006 * 117.50185 * 215.58116 * 6 4 2 27 27 C 1.53000 * 117.50295 * 284.24305 * 6 4 2 28 28 H 1.09010 * 109.46854 * 269.99862 * 1 2 3 29 29 H 1.09004 * 109.47452 * 29.99437 * 1 2 3 30 30 H 1.08994 * 109.47409 * 150.00346 * 1 2 3 31 31 H 1.08997 * 109.47511 * 273.62883 * 3 2 1 32 32 H 1.08999 * 109.47617 * 33.63894 * 3 2 1 33 33 H 1.08999 * 109.46848 * 153.63436 * 3 2 1 34 34 H 0.97001 * 120.00283 * 5.28863 * 9 7 6 35 35 H 1.09004 * 109.46707 * 59.99919 * 10 9 7 36 36 H 1.08997 * 109.46842 * 300.00602 * 10 9 7 37 37 H 1.08998 * 109.47290 * 299.86886 * 12 11 10 38 38 H 1.09000 * 109.47581 * 59.87600 * 12 11 10 39 39 H 1.09004 * 109.46865 * 179.86892 * 12 11 10 40 40 H 1.09004 * 109.68258 * 291.95249 * 13 11 10 41 41 H 1.09002 * 109.67882 * 52.50825 * 13 11 10 42 42 H 0.97000 * 119.99175 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.68326 * 290.77770 * 23 14 13 44 44 H 1.09005 * 109.67589 * 170.26454 * 23 14 13 45 45 H 1.08995 * 109.51210 * 67.59820 * 24 23 14 46 46 H 1.09004 * 109.50983 * 187.70567 * 24 23 14 47 47 H 1.09005 * 117.49834 * 215.00406 * 26 6 4 48 48 H 1.08998 * 117.49856 * 0.02905 * 26 6 4 49 49 H 1.08997 * 117.49730 * 359.97438 * 27 6 4 50 50 H 1.09001 * 117.50151 * 144.99435 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5343 -2.2164 -0.0671 6 6 3.6436 -1.1685 0.0816 7 6 4.2227 -0.7431 1.4063 8 8 5.0300 0.1607 1.4530 9 7 3.8432 -1.3670 2.5391 10 6 4.3159 -0.8797 3.8374 11 6 3.7423 -1.7578 4.9513 12 6 4.2050 -3.2027 4.7537 13 6 4.2313 -1.2449 6.3106 14 7 3.5218 -1.9831 7.3686 15 6 4.2060 -2.5764 8.3957 16 1 3.8928 -3.5410 8.7670 17 6 5.3020 -1.9380 8.9598 18 7 5.4709 -0.6442 8.7867 19 14 6.5370 -2.9151 9.9645 20 1 7.6078 -3.4262 9.0715 21 1 7.1351 -2.0378 11.0028 22 1 5.8500 -4.0579 10.6180 23 6 2.0547 -2.0647 7.2887 24 6 1.6719 -2.5377 5.8818 25 8 2.3142 -1.7044 4.9139 26 6 4.3930 -2.2471 -0.7033 27 6 4.4205 -0.7934 -1.1821 28 1 -0.3633 0.0000 1.0278 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5137 31 1 2.3228 1.6160 -1.0255 32 1 1.6382 2.0112 0.5693 33 1 3.1765 1.1230 0.4564 34 1 3.2572 -2.1387 2.4948 35 1 3.9870 0.1496 3.9808 36 1 5.4047 -0.9206 3.8662 37 1 3.8531 -3.5682 3.7890 38 1 5.2938 -3.2428 4.7824 39 1 3.7975 -3.8266 5.5493 40 1 5.3044 -1.4132 6.4021 41 1 4.0174 -0.1798 6.3996 42 1 6.2366 -0.1981 9.1812 43 1 1.6217 -1.0822 7.4763 44 1 1.6859 -2.7756 8.0282 45 1 1.9939 -3.5699 5.7445 46 1 0.5908 -2.4740 5.7579 47 1 5.3049 -2.6490 -0.2614 48 1 3.7977 -2.9555 -1.2793 49 1 3.8432 -0.5461 -2.0729 50 1 5.3503 -0.2390 -1.0553 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108334321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:15 Heat of formation + Delta-G solvation = -55.399363 kcal Electronic energy + Delta-G solvation = -31660.155773 eV Core-core repulsion = 27496.676786 eV Total energy + Delta-G solvation = -4163.478988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.00467 -39.44823 -38.71954 -36.33077 -35.74348 -34.93266 -34.29675 -31.79486 -31.32730 -28.65272 -28.01123 -27.19137 -26.52356 -25.81654 -23.96953 -23.27366 -22.76066 -21.52417 -20.94015 -19.39124 -18.65040 -17.98489 -17.05298 -16.54598 -16.32729 -15.98683 -15.74235 -15.41771 -15.15729 -14.99829 -14.51421 -14.23249 -14.21331 -13.98252 -13.51512 -13.28317 -13.24440 -12.98671 -12.86489 -12.84457 -12.70219 -12.52260 -12.23532 -11.95008 -11.90274 -11.62662 -11.35210 -11.21120 -11.07353 -10.86722 -10.80444 -10.77069 -10.37014 -10.32310 -10.28183 -10.09289 -9.77502 -9.51881 -9.04803 -8.97091 -8.91723 -8.54567 -6.61531 -5.88472 -3.44228 2.17800 2.43911 2.65734 3.04194 3.31186 3.39082 3.39896 3.53987 4.12320 4.20021 4.40363 4.48162 4.50073 4.64342 4.92646 5.01665 5.07292 5.10861 5.27144 5.29242 5.35855 5.39059 5.40977 5.50070 5.53087 5.56758 5.58506 5.64222 5.79830 5.90380 5.92387 5.96644 6.01293 6.12080 6.15931 6.27559 6.40739 6.49995 6.63747 6.73105 6.81482 6.92966 7.00562 7.27427 7.51955 7.74205 7.83024 7.85367 8.15864 8.38655 9.06818 9.67746 10.34314 11.16664 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.003056 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.921486 B = 9161.222583 C = 9738.021882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.612 5.612 3 C 0.070 3.930 4 C 0.557 3.443 5 O -0.528 6.528 6 C -0.197 4.197 7 C 0.554 3.446 8 O -0.534 6.534 9 N -0.706 5.706 10 C 0.138 3.862 11 C 0.079 3.921 12 C -0.163 4.163 13 C 0.164 3.836 14 N -0.585 5.585 15 C -0.269 4.269 16 H 0.062 0.938 17 C 0.019 3.981 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.110 3.890 24 C 0.046 3.954 25 O -0.383 6.383 26 C -0.126 4.126 27 C -0.130 4.130 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.407 0.593 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.256 0.744 43 H 0.025 0.975 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.112 0.888 49 H 0.105 0.895 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 0.818 -19.857 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.345 5.345 3 C -0.073 4.073 4 C 0.344 3.656 5 O -0.404 6.404 6 C -0.204 4.204 7 C 0.338 3.662 8 O -0.412 6.412 9 N -0.356 5.356 10 C 0.015 3.985 11 C 0.038 3.962 12 C -0.221 4.221 13 C 0.037 3.963 14 N -0.309 5.309 15 C -0.398 4.398 16 H 0.079 0.921 17 C -0.183 4.183 18 N -0.529 5.529 19 Si 0.728 3.272 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.016 4.016 24 C -0.032 4.032 25 O -0.302 6.302 26 C -0.164 4.164 27 C -0.167 4.167 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.242 0.758 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.128 0.872 48 H 0.130 0.870 49 H 0.123 0.877 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.792 1.167 -19.837 20.699 hybrid contribution 0.430 -0.726 0.921 1.249 sum -5.362 0.441 -18.917 19.667 Atomic orbital electron populations 1.21698 0.78617 1.03136 1.02395 1.47615 1.07240 1.06389 1.73252 1.21992 0.98356 0.84825 1.02103 1.19148 0.87045 0.83450 0.75986 1.90713 1.69356 1.31066 1.49298 1.21479 0.92616 1.11684 0.94606 1.18920 0.81399 0.82174 0.83662 1.90717 1.33668 1.30265 1.86548 1.45957 1.50643 1.33295 1.05741 1.21448 0.99103 0.98268 0.79682 1.22494 0.81873 0.94935 0.96880 1.22219 1.01865 0.96998 1.00985 1.21168 0.97201 0.94620 0.83308 1.43840 0.99141 1.63265 1.24608 1.18988 1.10728 0.99001 1.11097 0.92078 1.25331 1.01024 0.94705 0.97214 1.70065 1.29092 1.07271 1.46463 0.86371 0.81634 0.79532 0.79678 1.21144 1.21609 1.20182 1.21637 0.87155 0.98684 0.94170 1.23057 0.95915 0.93842 0.90358 1.87816 1.18246 1.67269 1.56886 1.23094 1.01028 0.92143 1.00108 1.23105 1.01668 0.98358 0.93603 0.92215 0.91059 0.90374 0.92258 0.90904 0.89583 0.75767 0.90733 0.89820 0.93786 0.91875 0.90665 0.90801 0.94895 0.93404 0.95703 0.91986 0.93380 0.90195 0.87209 0.86952 0.87685 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.48 59.85 0.63 1.39 16 2 N -0.61 -6.68 3.27 -189.52 -0.62 -7.30 16 3 C 0.07 0.64 10.08 59.84 0.60 1.24 16 4 C 0.56 7.19 6.85 -10.99 -0.08 7.12 16 5 O -0.53 -8.20 16.37 5.55 0.09 -8.11 16 6 C -0.20 -2.32 1.19 -156.81 -0.19 -2.50 16 7 C 0.55 7.92 5.97 -10.98 -0.07 7.86 16 8 O -0.53 -8.83 15.61 5.56 0.09 -8.74 16 9 N -0.71 -10.49 5.10 -60.29 -0.31 -10.80 16 10 C 0.14 2.31 4.82 -4.04 -0.02 2.30 16 11 C 0.08 1.46 0.76 -90.47 -0.07 1.39 16 12 C -0.16 -2.79 7.92 37.16 0.29 -2.50 16 13 C 0.16 3.74 4.15 -3.49 -0.01 3.72 16 14 N -0.58 -14.21 2.48 -171.76 -0.43 -14.64 16 15 C -0.27 -7.14 9.47 -15.06 -0.14 -7.29 16 16 H 0.06 1.61 7.90 -52.49 -0.41 1.20 16 17 C 0.02 0.51 4.85 -17.43 -0.08 0.43 16 18 N -0.89 -25.31 12.26 55.49 0.68 -24.63 16 19 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.11 2.29 6.73 -3.53 -0.02 2.27 16 24 C 0.05 0.82 6.60 37.31 0.25 1.06 16 25 O -0.38 -7.15 9.97 -35.23 -0.35 -7.51 16 26 C -0.13 -1.21 9.78 -26.69 -0.26 -1.47 16 27 C -0.13 -1.16 9.37 -26.69 -0.25 -1.41 16 28 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.08 0.76 7.37 -51.93 -0.38 0.38 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.09 0.96 4.71 -51.93 -0.24 0.72 16 34 H 0.41 6.01 7.21 -40.82 -0.29 5.71 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.04 0.66 6.88 -51.93 -0.36 0.30 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.41 6.11 -51.93 -0.32 1.09 16 40 H 0.07 1.83 7.16 -51.93 -0.37 1.45 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 45 H 0.05 0.83 6.25 -51.93 -0.32 0.51 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.11 1.03 8.07 -51.93 -0.42 0.61 16 49 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.12 1.06 7.82 -51.93 -0.41 0.66 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -32.09 398.34 -7.44 -39.53 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.15 Total: 6.55 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 0.58 Total: 13.60 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.67 Total: -57.37 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.17 Total: -24.36 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.09 -7.44 -39.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108334321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.866 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds