Wall clock time and date at job start Sat Apr 11 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33354 * 117.94488 * 2 1 4 4 O 1.21279 * 118.24698 * 2.25378 * 3 2 1 5 5 C 1.50179 * 123.50825 * 182.22320 * 3 2 1 6 6 C 1.53074 * 109.88868 * 342.42375 * 5 3 2 7 7 C 1.53337 * 108.42661 * 48.90136 * 6 5 3 8 8 C 1.45752 * 117.94935 * 180.02562 * 2 1 3 9 9 H 1.09002 * 109.13395 * 281.13108 * 8 2 1 10 10 C 1.50710 * 109.30058 * 40.61180 * 8 2 1 11 11 O 1.21280 * 119.99686 * 21.03223 * 10 8 2 12 12 N 1.34775 * 119.99689 * 201.03915 * 10 8 2 13 13 C 1.46505 * 119.99459 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46910 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.55476 * 304.88036 * 14 13 12 16 16 C 1.53291 * 109.51107 * 184.74798 * 14 13 12 17 17 N 1.47152 * 108.38404 * 187.77498 * 16 14 13 18 18 C 1.36933 * 120.98625 * 230.51369 * 17 16 14 19 19 H 1.08000 * 120.00163 * 153.30632 * 18 17 16 20 20 C 1.38812 * 120.00118 * 333.31027 * 18 17 16 21 21 N 1.31627 * 119.99598 * 343.57013 * 20 18 17 22 22 Si 1.86799 * 120.00114 * 163.56624 * 20 18 17 23 23 H 1.48499 * 109.47006 * 60.00640 * 22 20 18 24 24 H 1.48504 * 109.46653 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47444 * 300.00181 * 22 20 18 26 26 C 1.47158 * 118.03468 * 50.53761 * 17 16 14 27 27 C 1.53295 * 108.38358 * 309.46310 * 26 17 16 28 28 O 1.42964 * 109.22179 * 52.30371 * 27 26 17 29 29 H 1.09001 * 109.46986 * 269.99487 * 1 2 3 30 30 H 1.09001 * 109.47454 * 29.99385 * 1 2 3 31 31 H 1.09003 * 109.46988 * 149.99492 * 1 2 3 32 32 H 1.08996 * 109.40053 * 222.29459 * 5 3 2 33 33 H 1.09000 * 109.40019 * 102.55295 * 5 3 2 34 34 H 1.09001 * 109.67459 * 289.16268 * 6 5 3 35 35 H 1.09001 * 109.66848 * 168.63352 * 6 5 3 36 36 H 1.09001 * 109.60662 * 172.71353 * 7 6 5 37 37 H 1.09002 * 109.74152 * 52.30209 * 7 6 5 38 38 H 0.96995 * 120.00325 * 359.97438 * 12 10 8 39 39 H 1.09003 * 109.46773 * 60.00366 * 13 12 10 40 40 H 1.08999 * 109.47456 * 299.99936 * 13 12 10 41 41 H 1.09004 * 109.47015 * 180.12710 * 15 14 13 42 42 H 1.09007 * 109.46971 * 300.12031 * 15 14 13 43 43 H 1.08993 * 109.47441 * 60.12477 * 15 14 13 44 44 H 1.09003 * 109.68273 * 68.05462 * 16 14 13 45 45 H 1.09000 * 109.71624 * 307.51963 * 16 14 13 46 46 H 0.96999 * 119.99327 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.68406 * 189.73795 * 26 17 16 48 48 H 1.09003 * 109.68019 * 69.18758 * 26 17 16 49 49 H 1.08993 * 109.51354 * 292.37656 * 27 26 17 50 50 H 1.09001 * 109.51335 * 172.22584 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0899 1.1781 0.0000 4 8 1.4159 2.1854 0.0420 5 6 3.5838 1.3241 -0.0486 6 6 4.2493 0.0013 0.3395 7 6 3.5949 -1.1258 -0.4684 8 6 2.1481 -1.2875 -0.0006 9 1 2.1400 -1.6968 1.0097 10 6 1.4278 -2.2332 -0.9269 11 8 0.7037 -1.7964 -1.7963 12 7 1.5881 -3.5643 -0.7889 13 6 0.8873 -4.4836 -1.6891 14 6 1.2403 -5.9260 -1.3207 15 6 2.7601 -6.1015 -1.3373 16 6 0.6032 -6.8837 -2.3339 17 7 0.7977 -8.2618 -1.8558 18 6 1.3158 -9.2266 -2.6778 19 1 1.8468 -10.0672 -2.2560 20 6 1.1587 -9.1243 -4.0532 21 7 0.2586 -8.3046 -4.5536 22 14 2.2247 -10.1499 -5.1939 23 1 2.0046 -11.5916 -4.9140 24 1 1.8632 -9.8582 -6.6044 25 1 3.6540 -9.8148 -4.9702 26 6 0.4184 -8.5725 -0.4683 27 6 1.0646 -7.5325 0.4540 28 8 0.7398 -6.2214 -0.0146 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5139 32 1 3.8942 2.1034 0.6473 33 1 3.8880 1.5999 -1.0583 34 1 4.1088 -0.1814 1.4049 35 1 5.3142 0.0456 0.1116 36 1 4.1384 -2.0563 -0.3046 37 1 3.6102 -0.8752 -1.5291 38 1 2.1674 -3.9136 -0.0938 39 1 1.1907 -4.2869 -2.7174 40 1 -0.1884 -4.3366 -1.5932 41 1 3.0100 -7.1301 -1.0769 42 1 3.1411 -5.8761 -2.3335 43 1 3.2121 -5.4234 -0.6135 44 1 1.0814 -6.7614 -3.3058 45 1 -0.4626 -6.6720 -2.4201 46 1 0.1491 -8.2328 -5.5147 47 1 0.7742 -9.5684 -0.2047 48 1 -0.6660 -8.5306 -0.3661 49 1 2.1466 -7.6634 0.4486 50 1 0.6866 -7.6605 1.4683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108373161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:31 Heat of formation + Delta-G solvation = -80.303565 kcal Electronic energy + Delta-G solvation = -31289.096573 eV Core-core repulsion = 27124.537658 eV Total energy + Delta-G solvation = -4164.558915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.19089 -39.65402 -38.83346 -36.48258 -35.22056 -34.46945 -34.12723 -32.02840 -31.32623 -30.25321 -28.03754 -27.33346 -26.68990 -25.94451 -24.68066 -23.30502 -22.59773 -21.46164 -20.66438 -19.02942 -18.76946 -17.78731 -17.12260 -16.81666 -16.69496 -15.89520 -15.81898 -15.32836 -15.12029 -14.99205 -14.55491 -14.47410 -14.20010 -14.11112 -13.83933 -13.70871 -13.58114 -13.12346 -12.98551 -12.72029 -12.51565 -12.43188 -12.14225 -11.93980 -11.72751 -11.65898 -11.39553 -11.30276 -11.27323 -11.08403 -10.88120 -10.74504 -10.39171 -10.33732 -10.24182 -10.04459 -9.79668 -9.62679 -9.13950 -9.06333 -8.78020 -8.60242 -6.80610 -5.90914 -3.35067 2.35189 2.40618 2.74663 3.16468 3.29971 3.36427 3.37071 4.13738 4.18924 4.25724 4.31648 4.37658 4.38615 4.69529 4.81191 5.00748 5.04807 5.26859 5.28151 5.30098 5.36737 5.38166 5.43050 5.44048 5.50835 5.56844 5.59564 5.73372 5.83126 5.84987 5.90513 5.92856 5.98537 6.04747 6.12480 6.21534 6.34016 6.45308 6.57185 6.66460 6.74734 6.98997 7.19793 7.38378 7.44771 7.64340 7.78869 7.94632 8.11604 8.26720 9.04340 9.67149 10.24310 11.17074 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.002609 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.825449 B =10730.796733 C =11001.618200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.585 5.585 3 C 0.518 3.482 4 O -0.554 6.554 5 C -0.136 4.136 6 C -0.121 4.121 7 C -0.128 4.128 8 C 0.127 3.873 9 H 0.098 0.902 10 C 0.499 3.501 11 O -0.527 6.527 12 N -0.710 5.710 13 C 0.139 3.861 14 C 0.078 3.922 15 C -0.162 4.162 16 C 0.160 3.840 17 N -0.590 5.590 18 C -0.256 4.256 19 H 0.068 0.932 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.108 3.892 27 C 0.047 3.953 28 O -0.385 6.385 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.403 0.597 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.096 0.904 45 H 0.029 0.971 46 H 0.257 0.743 47 H 0.061 0.939 48 H 0.026 0.974 49 H 0.048 0.952 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.969 12.244 11.898 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.317 5.317 3 C 0.307 3.693 4 O -0.432 6.432 5 C -0.175 4.175 6 C -0.158 4.158 7 C -0.167 4.167 8 C 0.019 3.981 9 H 0.115 0.885 10 C 0.283 3.717 11 O -0.404 6.404 12 N -0.362 5.362 13 C 0.015 3.985 14 C 0.037 3.963 15 C -0.219 4.219 16 C 0.034 3.966 17 N -0.314 5.314 18 C -0.386 4.386 19 H 0.085 0.915 20 C -0.194 4.194 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.210 1.210 26 C -0.018 4.018 27 C -0.032 4.032 28 O -0.304 6.304 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.238 0.762 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.114 0.886 45 H 0.048 0.952 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.044 0.956 49 H 0.066 0.934 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.942 13.199 11.194 19.042 hybrid contribution 0.819 -1.147 -0.489 1.492 sum 8.761 12.052 10.706 18.347 Atomic orbital electron populations 1.22056 0.78718 1.05525 1.01489 1.46894 1.07961 1.04472 1.72366 1.20138 0.90941 0.82437 0.75832 1.90715 1.66585 1.35426 1.50479 1.21688 0.91038 0.99742 1.05066 1.21657 1.00533 0.93051 1.00592 1.21878 0.92010 1.01040 1.01725 1.20938 0.93227 0.84233 0.99678 0.88480 1.20628 0.82461 0.83201 0.85377 1.90712 1.38254 1.76947 1.34484 1.46033 1.48755 1.05258 1.36127 1.21402 0.97554 0.86130 0.93372 1.22553 0.93910 0.93739 0.86139 1.22204 0.95465 1.02701 1.01539 1.21280 0.97724 0.82190 0.95446 1.43985 1.73785 1.05543 1.08070 1.19108 1.28076 1.03820 0.87558 0.91459 1.25059 0.97590 0.99176 0.97616 1.70000 1.32473 1.40159 1.11899 0.86353 0.80323 0.80019 0.79973 1.20825 1.21518 1.20960 1.21605 0.97005 0.96515 0.86666 1.23039 0.99142 0.83865 0.97105 1.87819 1.77848 1.32259 1.32486 0.93206 0.90358 0.88752 0.88014 0.88082 0.90683 0.89780 0.88801 0.89961 0.76160 0.89815 0.90634 0.90704 0.91823 0.94003 0.88588 0.95248 0.93325 0.92017 0.95640 0.93361 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 9.59 59.85 0.57 1.39 16 2 N -0.58 -6.87 2.96 -176.50 -0.52 -7.39 16 3 C 0.52 6.32 7.47 -11.87 -0.09 6.24 16 4 O -0.55 -8.91 16.21 5.56 0.09 -8.82 16 5 C -0.14 -1.05 6.03 -28.10 -0.17 -1.21 16 6 C -0.12 -0.66 6.03 -26.52 -0.16 -0.82 16 7 C -0.13 -0.88 5.29 -26.60 -0.14 -1.02 16 8 C 0.13 1.19 3.14 -69.53 -0.22 0.97 16 9 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 10 C 0.50 6.23 6.22 -10.98 -0.07 6.16 16 11 O -0.53 -8.66 14.10 5.56 0.08 -8.58 16 12 N -0.71 -8.52 5.19 -60.29 -0.31 -8.84 16 13 C 0.14 2.14 4.85 -4.04 -0.02 2.12 16 14 C 0.08 1.32 0.78 -90.47 -0.07 1.25 16 15 C -0.16 -2.46 7.86 37.16 0.29 -2.17 16 16 C 0.16 3.54 4.11 -3.54 -0.01 3.52 16 17 N -0.59 -13.74 2.56 -171.83 -0.44 -14.18 16 18 C -0.26 -6.58 9.65 -15.06 -0.15 -6.73 16 19 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 20 C 0.00 0.12 4.95 -17.43 -0.09 0.04 16 21 N -0.90 -24.97 11.14 55.49 0.62 -24.36 16 22 Si 0.90 20.67 29.58 -169.99 -5.03 15.65 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.11 2.12 6.73 -3.53 -0.02 2.09 16 27 C 0.05 0.74 6.60 37.31 0.25 0.99 16 28 O -0.38 -6.50 10.17 -35.23 -0.36 -6.86 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.10 7.21 -51.93 -0.37 0.72 16 31 H 0.09 1.31 5.01 -51.93 -0.26 1.05 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.40 4.00 7.00 -40.82 -0.29 3.71 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.28 6.11 -51.93 -0.32 0.97 16 42 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 43 H 0.04 0.50 6.59 -51.93 -0.34 0.15 16 44 H 0.10 2.35 6.16 -51.93 -0.32 2.04 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.05 0.74 6.25 -51.93 -0.32 0.42 16 50 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -32.67 384.96 -8.27 -40.94 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -8.10 Total: 3.82 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -0.09 Total: 12.81 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.66 Total: -54.77 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.19 Total: -24.26 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.67 -8.27 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108373161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.359 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds