Wall clock time and date at job start Sat Apr 11 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33354 * 117.94488 * 2 1 4 4 O 1.21279 * 118.24698 * 2.25378 * 3 2 1 5 5 C 1.50179 * 123.50825 * 182.22320 * 3 2 1 6 6 C 1.53074 * 109.88868 * 342.42375 * 5 3 2 7 7 C 1.53337 * 108.42661 * 48.90136 * 6 5 3 8 8 C 1.45752 * 117.94935 * 180.02562 * 2 1 3 9 9 H 1.09002 * 109.13395 * 281.13108 * 8 2 1 10 10 C 1.50710 * 109.30058 * 40.61180 * 8 2 1 11 11 O 1.21280 * 119.99686 * 21.03223 * 10 8 2 12 12 N 1.34775 * 119.99689 * 201.03915 * 10 8 2 13 13 C 1.46505 * 119.99459 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46910 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.55476 * 304.88036 * 14 13 12 16 16 C 1.53291 * 109.51107 * 184.74798 * 14 13 12 17 17 N 1.47152 * 108.38404 * 187.77498 * 16 14 13 18 18 C 1.36933 * 120.98625 * 230.51369 * 17 16 14 19 19 H 1.08000 * 120.00163 * 153.30632 * 18 17 16 20 20 C 1.38812 * 120.00118 * 333.31027 * 18 17 16 21 21 N 1.31627 * 119.99598 * 343.57013 * 20 18 17 22 22 Si 1.86799 * 120.00114 * 163.56624 * 20 18 17 23 23 H 1.48499 * 109.47006 * 60.00640 * 22 20 18 24 24 H 1.48504 * 109.46653 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47444 * 300.00181 * 22 20 18 26 26 C 1.47158 * 118.03468 * 50.53761 * 17 16 14 27 27 C 1.53295 * 108.38358 * 309.46310 * 26 17 16 28 28 O 1.42964 * 109.22179 * 52.30371 * 27 26 17 29 29 H 1.09001 * 109.46986 * 269.99487 * 1 2 3 30 30 H 1.09001 * 109.47454 * 29.99385 * 1 2 3 31 31 H 1.09003 * 109.46988 * 149.99492 * 1 2 3 32 32 H 1.08996 * 109.40053 * 222.29459 * 5 3 2 33 33 H 1.09000 * 109.40019 * 102.55295 * 5 3 2 34 34 H 1.09001 * 109.67459 * 289.16268 * 6 5 3 35 35 H 1.09001 * 109.66848 * 168.63352 * 6 5 3 36 36 H 1.09001 * 109.60662 * 172.71353 * 7 6 5 37 37 H 1.09002 * 109.74152 * 52.30209 * 7 6 5 38 38 H 0.96995 * 120.00325 * 359.97438 * 12 10 8 39 39 H 1.09003 * 109.46773 * 60.00366 * 13 12 10 40 40 H 1.08999 * 109.47456 * 299.99936 * 13 12 10 41 41 H 1.09004 * 109.47015 * 180.12710 * 15 14 13 42 42 H 1.09007 * 109.46971 * 300.12031 * 15 14 13 43 43 H 1.08993 * 109.47441 * 60.12477 * 15 14 13 44 44 H 1.09003 * 109.68273 * 68.05462 * 16 14 13 45 45 H 1.09000 * 109.71624 * 307.51963 * 16 14 13 46 46 H 0.96999 * 119.99327 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.68406 * 189.73795 * 26 17 16 48 48 H 1.09003 * 109.68019 * 69.18758 * 26 17 16 49 49 H 1.08993 * 109.51354 * 292.37656 * 27 26 17 50 50 H 1.09001 * 109.51335 * 172.22584 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0899 1.1781 0.0000 4 8 1.4159 2.1854 0.0420 5 6 3.5838 1.3241 -0.0486 6 6 4.2493 0.0013 0.3395 7 6 3.5949 -1.1258 -0.4684 8 6 2.1481 -1.2875 -0.0006 9 1 2.1400 -1.6968 1.0097 10 6 1.4278 -2.2332 -0.9269 11 8 0.7037 -1.7964 -1.7963 12 7 1.5881 -3.5643 -0.7889 13 6 0.8873 -4.4836 -1.6891 14 6 1.2403 -5.9260 -1.3207 15 6 2.7601 -6.1015 -1.3373 16 6 0.6032 -6.8837 -2.3339 17 7 0.7977 -8.2618 -1.8558 18 6 1.3158 -9.2266 -2.6778 19 1 1.8468 -10.0672 -2.2560 20 6 1.1587 -9.1243 -4.0532 21 7 0.2586 -8.3046 -4.5536 22 14 2.2247 -10.1499 -5.1939 23 1 2.0046 -11.5916 -4.9140 24 1 1.8632 -9.8582 -6.6044 25 1 3.6540 -9.8148 -4.9702 26 6 0.4184 -8.5725 -0.4683 27 6 1.0646 -7.5325 0.4540 28 8 0.7398 -6.2214 -0.0146 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5139 32 1 3.8942 2.1034 0.6473 33 1 3.8880 1.5999 -1.0583 34 1 4.1088 -0.1814 1.4049 35 1 5.3142 0.0456 0.1116 36 1 4.1384 -2.0563 -0.3046 37 1 3.6102 -0.8752 -1.5291 38 1 2.1674 -3.9136 -0.0938 39 1 1.1907 -4.2869 -2.7174 40 1 -0.1884 -4.3366 -1.5932 41 1 3.0100 -7.1301 -1.0769 42 1 3.1411 -5.8761 -2.3335 43 1 3.2121 -5.4234 -0.6135 44 1 1.0814 -6.7614 -3.3058 45 1 -0.4626 -6.6720 -2.4201 46 1 0.1491 -8.2328 -5.5147 47 1 0.7742 -9.5684 -0.2047 48 1 -0.6660 -8.5306 -0.3661 49 1 2.1466 -7.6634 0.4486 50 1 0.6866 -7.6605 1.4683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108373161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:30 Heat of formation + Delta-G solvation = -103.931011 kcal Electronic energy + Delta-G solvation = -31290.121136 eV Core-core repulsion = 27124.537658 eV Total energy + Delta-G solvation = -4165.583478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.10768 -40.89754 -40.07845 -37.37796 -36.57982 -36.00919 -34.93463 -33.32553 -33.16644 -31.10924 -29.54559 -28.22725 -28.03568 -27.41001 -25.68266 -24.95985 -23.24595 -22.95389 -21.77149 -20.34068 -19.68901 -18.98669 -18.67361 -17.82096 -17.56897 -17.31218 -16.93212 -16.67555 -16.39048 -16.07897 -15.98346 -15.56771 -15.36094 -15.23343 -15.14128 -14.86015 -14.66440 -14.40682 -14.29282 -14.09821 -13.56853 -13.46577 -13.18098 -13.11487 -12.89385 -12.76593 -12.72600 -12.59009 -12.50616 -12.42479 -12.17862 -11.96807 -11.92495 -11.83505 -11.82362 -11.28124 -11.09128 -10.76813 -10.66811 -10.48041 -10.18363 -9.77659 -8.70098 -7.88942 -5.36187 1.38058 1.47332 1.48830 1.49223 1.55991 1.84783 2.18369 2.49021 2.80990 3.25593 3.45565 3.51566 3.56810 3.65671 3.86584 3.94813 4.03775 4.06176 4.13415 4.22037 4.35886 4.44780 4.49073 4.54045 4.56956 4.58987 4.66382 4.74512 4.79314 4.81331 4.86040 4.88286 4.96942 5.00228 5.05430 5.07287 5.15125 5.23359 5.24466 5.31417 5.34537 5.40939 5.55913 5.62633 6.30498 6.31535 6.39370 6.49200 7.03636 7.08178 7.15128 7.77554 8.31272 9.16294 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.002609 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.825449 B =10730.796733 C =11001.618200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.588 5.588 3 C 0.508 3.492 4 O -0.603 6.603 5 C -0.132 4.132 6 C -0.110 4.110 7 C -0.127 4.127 8 C 0.130 3.870 9 H 0.133 0.867 10 C 0.500 3.500 11 O -0.572 6.572 12 N -0.694 5.694 13 C 0.150 3.850 14 C 0.094 3.906 15 C -0.153 4.153 16 C 0.167 3.833 17 N -0.607 5.607 18 C -0.259 4.259 19 H 0.074 0.926 20 C -0.049 4.049 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.273 1.273 26 C 0.100 3.900 27 C 0.054 3.946 28 O -0.385 6.385 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.066 0.934 38 H 0.418 0.582 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.066 0.934 45 H -0.011 1.011 46 H 0.250 0.750 47 H 0.071 0.929 48 H 0.009 0.991 49 H 0.064 0.936 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.419 11.999 14.594 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.319 5.319 3 C 0.299 3.701 4 O -0.486 6.486 5 C -0.171 4.171 6 C -0.147 4.147 7 C -0.165 4.165 8 C 0.023 3.977 9 H 0.150 0.850 10 C 0.286 3.714 11 O -0.452 6.452 12 N -0.347 5.347 13 C 0.025 3.975 14 C 0.053 3.947 15 C -0.211 4.211 16 C 0.040 3.960 17 N -0.331 5.331 18 C -0.389 4.389 19 H 0.091 0.909 20 C -0.245 4.245 21 N -0.583 5.583 22 Si 0.794 3.206 23 H -0.203 1.203 24 H -0.225 1.225 25 H -0.198 1.198 26 C -0.025 4.025 27 C -0.023 4.023 28 O -0.304 6.304 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.142 0.858 37 H 0.084 0.916 38 H 0.257 0.743 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.007 0.993 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.027 0.973 49 H 0.082 0.918 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.439 12.915 13.954 22.189 hybrid contribution -0.369 -1.124 -1.299 1.757 sum 11.070 11.791 12.655 20.536 Atomic orbital electron populations 1.21905 0.80109 1.03715 1.01841 1.47065 1.07513 1.05607 1.71754 1.21074 0.92830 0.81651 0.74537 1.90688 1.68068 1.37028 1.52770 1.21764 0.87482 1.01945 1.05907 1.21674 1.01484 0.90471 1.01108 1.21992 0.90268 1.03258 1.01021 1.21228 0.93884 0.82134 1.00412 0.84992 1.21272 0.81694 0.83354 0.85077 1.90710 1.40281 1.77636 1.36592 1.45766 1.48445 1.04740 1.35770 1.21004 0.96719 0.86149 0.93595 1.22178 0.94940 0.92895 0.84714 1.22118 0.93533 1.02919 1.02489 1.21056 0.95447 0.83429 0.96033 1.44247 1.73880 1.05650 1.09312 1.19467 1.27238 1.04085 0.88072 0.90867 1.25798 0.98881 1.00694 0.99119 1.70180 1.34418 1.42218 1.11468 0.85364 0.79099 0.78685 0.77453 1.20259 1.22543 1.19842 1.21840 0.96501 0.98685 0.85512 1.23094 0.99882 0.81825 0.97522 1.87832 1.78133 1.32767 1.31665 0.91746 0.92587 0.90045 0.86775 0.87508 0.89143 0.86997 0.85763 0.91554 0.74319 0.91011 0.92760 0.92135 0.92569 0.89592 0.91601 0.99326 0.94132 0.91062 0.97262 0.91770 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.75 9.59 127.77 1.23 2.97 16 2 N -0.59 -13.17 2.96 -831.52 -2.46 -15.63 16 3 C 0.51 11.96 7.47 87.71 0.66 12.61 16 4 O -0.60 -19.79 16.21 -3.03 -0.05 -19.84 16 5 C -0.13 -1.68 6.03 29.71 0.18 -1.50 16 6 C -0.11 -0.67 6.03 30.73 0.19 -0.49 16 7 C -0.13 -1.23 5.29 30.68 0.16 -1.07 16 8 C 0.13 2.05 3.14 44.36 0.14 2.19 16 9 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 10 C 0.50 11.78 6.22 87.66 0.54 12.32 16 11 O -0.57 -19.17 14.10 -3.03 -0.04 -19.21 16 12 N -0.69 -15.16 5.19 -463.04 -2.40 -17.57 16 13 C 0.15 4.63 4.85 86.38 0.42 5.05 16 14 C 0.09 3.11 0.78 -10.70 -0.01 3.10 16 15 C -0.15 -4.28 7.86 71.98 0.57 -3.71 16 16 C 0.17 7.66 4.11 86.35 0.35 8.01 16 17 N -0.61 -28.56 2.56 -697.53 -1.79 -30.34 16 18 C -0.26 -13.36 9.65 84.03 0.81 -12.55 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -2.65 4.95 84.86 0.42 -2.23 16 21 N -0.94 -54.12 11.14 21.65 0.24 -53.88 16 22 Si 0.97 42.98 29.58 68.60 2.03 45.01 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 C 0.10 3.82 6.73 86.35 0.58 4.40 16 27 C 0.05 1.56 6.60 72.08 0.48 2.03 16 28 O -0.38 -12.13 10.17 -148.98 -1.52 -13.65 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.68 7.21 -2.39 -0.02 1.66 16 31 H 0.08 2.34 5.01 -2.39 -0.01 2.32 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 0.35 8.13 -2.39 -0.02 0.33 16 35 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 38 H 0.42 6.49 7.00 -92.71 -0.65 5.84 16 39 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 1.90 6.11 -2.39 -0.01 1.89 16 42 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.09 1.63 6.59 -2.39 -0.02 1.62 16 44 H 0.07 3.40 6.16 -2.39 -0.01 3.39 16 45 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 46 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 47 H 0.07 2.54 7.96 -2.39 -0.02 2.52 16 48 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.06 1.70 6.25 -2.39 -0.01 1.69 16 50 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -76.97 384.96 1.02 -75.95 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.30 Total: 18.01 kcal Atomic # 6 Polarization: 24.44 SS G_CDS: 6.71 Total: 31.15 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -6.41 Total: -117.42 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -1.61 Total: -52.70 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -76.97 1.02 -75.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108373161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.977 kcal (2) G-P(sol) polarization free energy of solvation -76.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds