Wall clock time and date at job start Sat Apr 11 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.45763 * 117.94489 * 2 1 4 4 C 1.52915 * 110.48600 * 160.92113 * 3 2 1 5 5 H 1.08999 * 109.74167 * 290.91612 * 4 3 2 6 6 C 1.50709 * 109.60158 * 170.50924 * 4 3 2 7 7 O 1.21283 * 119.99903 * 240.81834 * 6 4 3 8 8 N 1.34770 * 119.99734 * 60.81444 * 6 4 3 9 9 C 1.46499 * 119.99803 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.47129 * 180.02562 * 9 8 6 11 11 C 1.52992 * 109.51094 * 60.10292 * 10 9 8 12 12 C 1.53717 * 109.44190 * 180.38921 * 10 9 8 13 13 N 1.47150 * 108.15798 * 172.37286 * 12 10 9 14 14 C 1.36946 * 120.97883 * 129.43541 * 13 12 10 15 15 H 1.08000 * 119.99662 * 206.08114 * 14 13 12 16 16 C 1.38809 * 119.99966 * 26.34866 * 14 13 12 17 17 N 1.31617 * 119.99896 * 16.65444 * 16 14 13 18 18 Si 1.86794 * 119.99912 * 196.65106 * 16 14 13 19 19 H 1.48506 * 109.47245 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47040 * 120.00219 * 18 16 14 21 21 H 1.48502 * 109.47458 * 240.00024 * 18 16 14 22 22 C 1.47146 * 118.03975 * 309.15438 * 13 12 10 23 23 C 1.53302 * 108.37998 * 50.78909 * 22 13 12 24 24 O 1.42952 * 109.22421 * 307.69588 * 23 22 13 25 25 C 1.53345 * 108.67593 * 50.75760 * 4 3 2 26 26 C 1.53074 * 108.42127 * 292.46459 * 25 4 3 27 27 C 1.33350 * 117.95078 * 179.97438 * 2 1 3 28 28 O 1.21284 * 118.24615 * 2.19986 * 27 2 1 29 29 H 1.09004 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47492 * 300.00016 * 1 2 3 31 31 H 1.08998 * 109.46881 * 60.00760 * 1 2 3 32 32 H 1.09004 * 109.29919 * 40.61189 * 3 2 1 33 33 H 1.08998 * 109.29781 * 281.23610 * 3 2 1 34 34 H 0.96997 * 120.00225 * 0.02562 * 8 6 4 35 35 H 1.09005 * 109.46955 * 60.00299 * 9 8 6 36 36 H 1.08996 * 109.47593 * 300.00200 * 9 8 6 37 37 H 1.08998 * 109.47429 * 299.89530 * 11 10 9 38 38 H 1.08997 * 109.47411 * 59.90337 * 11 10 9 39 39 H 1.09003 * 109.47277 * 179.89724 * 11 10 9 40 40 H 1.09004 * 109.83803 * 52.69267 * 12 10 9 41 41 H 1.08996 * 109.74652 * 291.99964 * 12 10 9 42 42 H 0.97003 * 119.99600 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.68650 * 170.50619 * 22 13 12 44 44 H 1.08992 * 109.68677 * 291.02883 * 22 13 12 45 45 H 1.09002 * 109.50923 * 67.62417 * 23 22 13 46 46 H 1.09001 * 109.50588 * 187.77145 * 23 22 13 47 47 H 1.08996 * 109.67719 * 52.19539 * 25 4 3 48 48 H 1.09000 * 109.67587 * 172.69930 * 25 4 3 49 49 H 1.08997 * 109.39897 * 169.03031 * 26 25 4 50 50 H 1.08998 * 109.40081 * 288.85862 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2877 0.0000 4 6 3.5948 1.1260 0.4682 5 1 3.6126 0.8741 1.5285 6 6 4.3463 2.4126 0.2416 7 8 5.3110 2.4300 -0.4932 8 7 3.9462 3.5437 0.8554 9 6 4.6763 4.7944 0.6347 10 6 4.0214 5.9167 1.4425 11 6 4.0581 5.5637 2.9307 12 6 4.7821 7.2308 1.2028 13 7 4.0265 8.3209 1.8400 14 6 4.6421 9.2048 2.6857 15 1 4.0696 9.7082 3.4507 16 6 6.0008 9.4577 2.5561 17 7 6.6300 9.1226 1.4498 18 14 6.9361 10.2739 3.9520 19 1 6.0064 10.5482 5.0771 20 1 8.0206 9.3715 4.4154 21 1 7.5250 11.5504 3.4735 22 6 2.5913 8.4371 1.5367 23 6 1.9385 7.0675 1.7559 24 8 2.6641 6.0775 1.0231 25 6 4.2493 -0.0011 -0.3396 26 6 3.5839 -1.3239 0.0487 27 6 2.0900 -1.1779 0.0005 28 8 1.4160 -2.1854 -0.0400 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6270 1.9719 0.6697 33 1 2.1398 1.6998 -1.0090 34 1 3.1748 3.5297 1.4433 35 1 4.6518 5.0473 -0.4253 36 1 5.7110 4.6727 0.9553 37 1 3.5142 4.6338 3.0970 38 1 5.0931 5.4414 3.2497 39 1 3.5930 6.3644 3.5057 40 1 4.8666 7.4194 0.1325 41 1 5.7766 7.1664 1.6443 42 1 7.5794 9.2998 1.3591 43 1 2.1343 9.1718 2.1996 44 1 2.4590 8.7457 0.4998 45 1 1.9571 6.8211 2.8176 46 1 0.9066 7.0959 1.4060 47 1 4.1088 0.1815 -1.4049 48 1 5.3144 -0.0449 -0.1121 49 1 3.8944 -2.1033 -0.6471 50 1 3.8869 -1.5987 1.0590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108422203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:50 Heat of formation + Delta-G solvation = -90.069346 kcal Electronic energy + Delta-G solvation = -31005.827761 eV Core-core repulsion = 26840.845370 eV Total energy + Delta-G solvation = -4164.982391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.04237 -39.79224 -38.89161 -36.54677 -35.11505 -34.43798 -34.25400 -32.00230 -31.32358 -30.24383 -28.02834 -27.50294 -26.55795 -25.71487 -24.81654 -23.31572 -22.98686 -21.28210 -20.44034 -19.08640 -18.78398 -17.69105 -17.11173 -16.86644 -16.56966 -16.05768 -15.84818 -15.43800 -15.32813 -14.88501 -14.63491 -14.42093 -14.25646 -13.98067 -13.80580 -13.59442 -13.56311 -13.12419 -12.98504 -12.86743 -12.58011 -12.47505 -12.15429 -12.11251 -11.88041 -11.66275 -11.56768 -11.30822 -11.25578 -11.08191 -10.89609 -10.72678 -10.39153 -10.29188 -10.09218 -9.96371 -9.88286 -9.60697 -9.13037 -9.10216 -8.95117 -8.60523 -6.80740 -5.90836 -3.34502 2.32310 2.44287 2.73068 3.13301 3.29064 3.37427 3.38904 4.12772 4.17763 4.23487 4.31601 4.37942 4.41962 4.86802 4.92335 4.94870 5.03485 5.07850 5.13999 5.19511 5.27354 5.33618 5.38849 5.43489 5.47445 5.56985 5.58711 5.66807 5.83851 5.84833 5.86435 5.93217 6.00175 6.00893 6.05945 6.22832 6.35774 6.47318 6.58797 6.67969 6.75175 6.99998 7.06156 7.39387 7.51140 7.65314 7.79135 7.82497 8.18726 8.26772 9.04629 9.67465 10.24317 11.17091 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.002523 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.367703 B =11095.622107 C =11840.655516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.605 5.605 3 C 0.124 3.876 4 C -0.124 4.124 5 H 0.106 0.894 6 C 0.518 3.482 7 O -0.535 6.535 8 N -0.714 5.714 9 C 0.139 3.861 10 C 0.078 3.922 11 C -0.161 4.161 12 C 0.160 3.840 13 N -0.591 5.591 14 C -0.254 4.254 15 H 0.069 0.931 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.108 3.892 23 C 0.047 3.953 24 O -0.385 6.385 25 C -0.104 4.104 26 C -0.134 4.134 27 C 0.516 3.484 28 O -0.558 6.558 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.402 0.598 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.097 0.903 42 H 0.255 0.745 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.048 0.952 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.105 0.895 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.358 -15.924 -0.239 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.338 5.338 3 C 0.000 4.000 4 C -0.146 4.146 5 H 0.124 0.876 6 C 0.302 3.698 7 O -0.412 6.412 8 N -0.366 5.366 9 C 0.015 3.985 10 C 0.036 3.964 11 C -0.219 4.219 12 C 0.034 3.966 13 N -0.314 5.314 14 C -0.384 4.384 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.216 1.216 22 C -0.018 4.018 23 C -0.031 4.031 24 O -0.304 6.304 25 C -0.142 4.142 26 C -0.173 4.173 27 C 0.305 3.695 28 O -0.436 6.436 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.237 0.763 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.115 0.885 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.124 0.876 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.891 -16.452 -0.966 18.726 hybrid contribution 0.261 0.943 1.192 1.542 sum -8.630 -15.510 0.226 17.750 Atomic orbital electron populations 1.21809 0.79208 1.04747 1.01670 1.47152 1.07686 1.05861 1.73150 1.21325 0.91051 0.84786 1.02802 1.21659 0.94900 0.94978 1.03099 0.87554 1.20128 0.84772 0.84546 0.80308 1.90734 1.27677 1.85678 1.37111 1.46030 1.33232 1.08715 1.48579 1.21401 0.95367 0.80909 1.00824 1.22643 0.83848 0.96883 0.92984 1.22196 1.02410 1.00565 0.96721 1.21376 0.95804 0.82675 0.96775 1.44028 1.03381 1.30454 1.53574 1.19201 0.92072 1.19445 1.07646 0.91353 1.25050 0.98280 0.99525 0.96680 1.70017 1.09658 1.50998 1.23862 0.86223 0.79911 0.78813 0.81820 1.20250 1.21445 1.21621 1.21600 0.87046 0.94617 0.98530 1.23033 0.94447 0.89975 0.95671 1.87794 1.23495 1.58506 1.60635 1.21502 1.01033 0.90969 1.00670 1.21696 0.90645 0.99855 1.05148 1.20275 0.91175 0.82659 0.75384 1.90701 1.66470 1.35742 1.50732 0.88936 0.91920 0.91977 0.89707 0.90654 0.76311 0.90712 0.89960 0.94002 0.91866 0.90778 0.95216 0.88529 0.93439 0.92049 0.95665 0.93376 0.90184 0.90283 0.89157 0.87636 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.48 59.85 0.63 1.15 16 2 N -0.61 -5.38 3.21 -182.85 -0.59 -5.97 16 3 C 0.12 0.96 5.57 -4.48 -0.02 0.93 16 4 C -0.12 -1.04 2.60 -91.63 -0.24 -1.28 16 5 H 0.11 0.73 8.12 -51.93 -0.42 0.31 16 6 C 0.52 6.21 7.13 -10.98 -0.08 6.13 16 7 O -0.54 -8.53 15.90 5.55 0.09 -8.44 16 8 N -0.71 -8.57 5.06 -60.29 -0.31 -8.88 16 9 C 0.14 2.13 4.82 -4.04 -0.02 2.11 16 10 C 0.08 1.32 0.76 -90.25 -0.07 1.25 16 11 C -0.16 -2.52 7.93 37.15 0.29 -2.22 16 12 C 0.16 3.54 4.15 -3.31 -0.01 3.53 16 13 N -0.59 -13.76 2.56 -171.57 -0.44 -14.20 16 14 C -0.25 -6.54 9.65 -15.06 -0.15 -6.69 16 15 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 16 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 17 N -0.90 -24.97 11.13 55.49 0.62 -24.35 16 18 Si 0.90 20.73 29.59 -169.99 -5.03 15.70 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.11 2.11 6.73 -3.53 -0.02 2.09 16 23 C 0.05 0.74 6.60 37.31 0.25 0.99 16 24 O -0.38 -6.41 9.97 -35.23 -0.35 -6.76 16 25 C -0.10 -0.87 4.71 -26.51 -0.12 -0.99 16 26 C -0.13 -1.04 6.03 -28.10 -0.17 -1.21 16 27 C 0.52 5.43 7.47 -11.87 -0.09 5.34 16 28 O -0.56 -7.83 15.95 5.55 0.09 -7.74 16 29 H 0.09 0.85 6.59 -51.93 -0.34 0.51 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.54 7.84 -51.93 -0.41 0.13 16 33 H 0.08 0.63 8.11 -51.93 -0.42 0.20 16 34 H 0.40 4.08 6.88 -40.82 -0.28 3.80 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.04 0.53 6.87 -51.93 -0.36 0.17 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.29 6.12 -51.93 -0.32 0.97 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 2.38 6.14 -51.93 -0.32 2.06 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.74 6.25 -51.93 -0.32 0.42 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.08 0.73 8.13 -51.93 -0.42 0.30 16 48 H 0.09 0.78 7.90 -51.93 -0.41 0.37 16 49 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -32.20 388.79 -8.19 -40.39 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.21 Total: 3.26 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 0.09 Total: 11.13 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.71 Total: -53.39 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.17 Total: -22.94 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.20 -8.19 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108422203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.681 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds