Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.45763 * 117.94489 * 2 1 4 4 C 1.52915 * 110.48600 * 160.92113 * 3 2 1 5 5 H 1.08999 * 109.74167 * 290.91612 * 4 3 2 6 6 C 1.50709 * 109.60158 * 170.50924 * 4 3 2 7 7 O 1.21283 * 119.99903 * 240.81834 * 6 4 3 8 8 N 1.34770 * 119.99734 * 60.81444 * 6 4 3 9 9 C 1.46499 * 119.99803 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.47129 * 180.02562 * 9 8 6 11 11 C 1.52992 * 109.51094 * 60.10292 * 10 9 8 12 12 C 1.53717 * 109.44190 * 180.38921 * 10 9 8 13 13 N 1.47150 * 108.15798 * 172.37286 * 12 10 9 14 14 C 1.36946 * 120.97883 * 129.43541 * 13 12 10 15 15 H 1.08000 * 119.99662 * 206.08114 * 14 13 12 16 16 C 1.38809 * 119.99966 * 26.34866 * 14 13 12 17 17 N 1.31617 * 119.99896 * 16.65444 * 16 14 13 18 18 Si 1.86794 * 119.99912 * 196.65106 * 16 14 13 19 19 H 1.48506 * 109.47245 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47040 * 120.00219 * 18 16 14 21 21 H 1.48502 * 109.47458 * 240.00024 * 18 16 14 22 22 C 1.47146 * 118.03975 * 309.15438 * 13 12 10 23 23 C 1.53302 * 108.37998 * 50.78909 * 22 13 12 24 24 O 1.42952 * 109.22421 * 307.69588 * 23 22 13 25 25 C 1.53345 * 108.67593 * 50.75760 * 4 3 2 26 26 C 1.53074 * 108.42127 * 292.46459 * 25 4 3 27 27 C 1.33350 * 117.95078 * 179.97438 * 2 1 3 28 28 O 1.21284 * 118.24615 * 2.19986 * 27 2 1 29 29 H 1.09004 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47492 * 300.00016 * 1 2 3 31 31 H 1.08998 * 109.46881 * 60.00760 * 1 2 3 32 32 H 1.09004 * 109.29919 * 40.61189 * 3 2 1 33 33 H 1.08998 * 109.29781 * 281.23610 * 3 2 1 34 34 H 0.96997 * 120.00225 * 0.02562 * 8 6 4 35 35 H 1.09005 * 109.46955 * 60.00299 * 9 8 6 36 36 H 1.08996 * 109.47593 * 300.00200 * 9 8 6 37 37 H 1.08998 * 109.47429 * 299.89530 * 11 10 9 38 38 H 1.08997 * 109.47411 * 59.90337 * 11 10 9 39 39 H 1.09003 * 109.47277 * 179.89724 * 11 10 9 40 40 H 1.09004 * 109.83803 * 52.69267 * 12 10 9 41 41 H 1.08996 * 109.74652 * 291.99964 * 12 10 9 42 42 H 0.97003 * 119.99600 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.68650 * 170.50619 * 22 13 12 44 44 H 1.08992 * 109.68677 * 291.02883 * 22 13 12 45 45 H 1.09002 * 109.50923 * 67.62417 * 23 22 13 46 46 H 1.09001 * 109.50588 * 187.77145 * 23 22 13 47 47 H 1.08996 * 109.67719 * 52.19539 * 25 4 3 48 48 H 1.09000 * 109.67587 * 172.69930 * 25 4 3 49 49 H 1.08997 * 109.39897 * 169.03031 * 26 25 4 50 50 H 1.08998 * 109.40081 * 288.85862 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2877 0.0000 4 6 3.5948 1.1260 0.4682 5 1 3.6126 0.8741 1.5285 6 6 4.3463 2.4126 0.2416 7 8 5.3110 2.4300 -0.4932 8 7 3.9462 3.5437 0.8554 9 6 4.6763 4.7944 0.6347 10 6 4.0214 5.9167 1.4425 11 6 4.0581 5.5637 2.9307 12 6 4.7821 7.2308 1.2028 13 7 4.0265 8.3209 1.8400 14 6 4.6421 9.2048 2.6857 15 1 4.0696 9.7082 3.4507 16 6 6.0008 9.4577 2.5561 17 7 6.6300 9.1226 1.4498 18 14 6.9361 10.2739 3.9520 19 1 6.0064 10.5482 5.0771 20 1 8.0206 9.3715 4.4154 21 1 7.5250 11.5504 3.4735 22 6 2.5913 8.4371 1.5367 23 6 1.9385 7.0675 1.7559 24 8 2.6641 6.0775 1.0231 25 6 4.2493 -0.0011 -0.3396 26 6 3.5839 -1.3239 0.0487 27 6 2.0900 -1.1779 0.0005 28 8 1.4160 -2.1854 -0.0400 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6270 1.9719 0.6697 33 1 2.1398 1.6998 -1.0090 34 1 3.1748 3.5297 1.4433 35 1 4.6518 5.0473 -0.4253 36 1 5.7110 4.6727 0.9553 37 1 3.5142 4.6338 3.0970 38 1 5.0931 5.4414 3.2497 39 1 3.5930 6.3644 3.5057 40 1 4.8666 7.4194 0.1325 41 1 5.7766 7.1664 1.6443 42 1 7.5794 9.2998 1.3591 43 1 2.1343 9.1718 2.1996 44 1 2.4590 8.7457 0.4998 45 1 1.9571 6.8211 2.8176 46 1 0.9066 7.0959 1.4060 47 1 4.1088 0.1815 -1.4049 48 1 5.3144 -0.0449 -0.1121 49 1 3.8944 -2.1033 -0.6471 50 1 3.8869 -1.5987 1.0590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108422203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = -112.670350 kcal Electronic energy + Delta-G solvation = -31006.807814 eV Core-core repulsion = 26840.845370 eV Total energy + Delta-G solvation = -4165.962444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.85269 -40.93786 -40.15473 -37.39310 -36.54125 -35.92135 -34.98419 -33.29473 -33.15114 -31.07191 -29.54137 -28.17012 -27.99271 -27.20326 -25.53982 -24.96301 -23.89212 -22.74842 -21.43626 -20.29260 -19.75262 -18.94051 -18.54347 -17.67905 -17.43185 -17.30231 -16.89072 -16.76764 -16.46868 -16.14393 -15.86882 -15.58421 -15.35283 -15.30830 -15.13228 -14.78967 -14.56974 -14.42225 -14.29232 -13.84502 -13.62624 -13.39111 -13.16417 -13.14717 -12.90867 -12.84501 -12.80489 -12.72705 -12.50991 -12.41134 -12.24823 -12.10359 -11.95134 -11.92421 -11.81069 -11.14680 -10.91293 -10.76223 -10.71453 -10.48099 -10.09216 -9.79878 -8.69886 -7.88832 -5.35440 1.45387 1.48408 1.53003 1.56841 1.57745 1.96848 2.15604 2.48988 2.82402 3.25905 3.44515 3.53138 3.54527 3.64049 3.70797 3.95903 4.06149 4.13206 4.21821 4.24088 4.35798 4.45227 4.46100 4.49915 4.53793 4.62056 4.64333 4.68885 4.73492 4.75633 4.83586 4.88817 4.98343 5.00641 5.02451 5.08124 5.15948 5.19232 5.24478 5.34302 5.40385 5.40983 5.56845 5.63602 6.30952 6.35075 6.39977 6.55721 7.07501 7.08736 7.23410 7.78050 8.31309 9.16529 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.002523 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.367703 B =11095.622107 C =11840.655516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.602 5.602 3 C 0.125 3.875 4 C -0.113 4.113 5 H 0.134 0.866 6 C 0.522 3.478 7 O -0.577 6.577 8 N -0.702 5.702 9 C 0.149 3.851 10 C 0.094 3.906 11 C -0.153 4.153 12 C 0.167 3.833 13 N -0.607 5.607 14 C -0.256 4.256 15 H 0.073 0.927 16 C -0.050 4.050 17 N -0.936 5.936 18 Si 0.964 3.036 19 H -0.264 1.264 20 H -0.290 1.290 21 H -0.297 1.297 22 C 0.100 3.900 23 C 0.054 3.946 24 O -0.382 6.382 25 C -0.100 4.100 26 C -0.124 4.124 27 C 0.509 3.491 28 O -0.600 6.600 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.415 0.585 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.059 0.941 40 H -0.008 1.008 41 H 0.066 0.934 42 H 0.250 0.750 43 H 0.070 0.930 44 H 0.011 0.989 45 H 0.061 0.939 46 H 0.118 0.882 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.110 0.890 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 -16.944 1.602 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.334 5.334 3 C 0.002 3.998 4 C -0.135 4.135 5 H 0.152 0.848 6 C 0.308 3.692 7 O -0.456 6.456 8 N -0.354 5.354 9 C 0.024 3.976 10 C 0.053 3.947 11 C -0.211 4.211 12 C 0.040 3.960 13 N -0.332 5.332 14 C -0.386 4.386 15 H 0.091 0.909 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.217 1.217 21 H -0.224 1.224 22 C -0.025 4.025 23 C -0.023 4.023 24 O -0.301 6.301 25 C -0.138 4.138 26 C -0.164 4.164 27 C 0.299 3.701 28 O -0.482 6.482 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.253 0.747 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.010 0.990 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.029 0.971 45 H 0.080 0.920 46 H 0.136 0.864 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.128 0.872 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.863 -17.458 0.899 20.582 hybrid contribution 0.791 1.340 0.548 1.649 sum -10.073 -16.119 1.448 19.062 Atomic orbital electron populations 1.21908 0.78513 1.04037 1.03279 1.47224 1.08296 1.05813 1.72055 1.21388 0.90633 0.84516 1.03221 1.21613 0.94660 0.92455 1.04731 0.84837 1.20690 0.84187 0.85259 0.79027 1.90730 1.29728 1.86318 1.38869 1.45823 1.33279 1.07479 1.48843 1.21023 0.95189 0.82112 0.99271 1.22257 0.83475 0.94410 0.94549 1.22108 1.02417 1.01903 0.94638 1.21158 0.95448 0.85409 0.93994 1.44288 1.04942 1.30590 1.53340 1.19529 0.92344 1.19019 1.07711 0.90943 1.25768 0.99269 1.00887 0.98614 1.70181 1.09397 1.52897 1.25746 0.85254 0.78614 0.77300 0.79573 1.18792 1.21701 1.22387 1.21836 0.85218 0.97642 0.97835 1.23085 0.95483 0.87056 0.96672 1.87809 1.22768 1.58457 1.61082 1.21444 1.01002 0.91319 1.00019 1.21667 0.88748 0.99535 1.06438 1.20728 0.92055 0.82519 0.74763 1.90688 1.67453 1.37148 1.52925 0.90806 0.89778 0.90870 0.87261 0.91155 0.74677 0.92670 0.90977 0.90008 0.92735 0.92205 0.99036 0.91613 0.94108 0.91202 0.97110 0.92046 0.86382 0.91500 0.89354 0.87173 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.85 10.48 127.77 1.34 2.18 16 2 N -0.60 -9.19 3.21 -851.60 -2.73 -11.92 16 3 C 0.13 1.53 5.57 86.49 0.48 2.01 16 4 C -0.11 -1.56 2.60 -11.45 -0.03 -1.59 16 5 H 0.13 1.22 8.12 -2.39 -0.02 1.20 16 6 C 0.52 11.48 7.13 87.66 0.63 12.10 16 7 O -0.58 -18.08 15.90 -3.04 -0.05 -18.13 16 8 N -0.70 -15.13 5.06 -463.05 -2.35 -17.48 16 9 C 0.15 4.52 4.82 86.38 0.42 4.94 16 10 C 0.09 3.11 0.76 -10.55 -0.01 3.11 16 11 C -0.15 -4.42 7.93 71.98 0.57 -3.85 16 12 C 0.17 7.60 4.15 86.50 0.36 7.95 16 13 N -0.61 -28.50 2.56 -696.73 -1.78 -30.29 16 14 C -0.26 -13.23 9.65 84.03 0.81 -12.42 16 15 H 0.07 3.62 7.88 -2.91 -0.02 3.59 16 16 C -0.05 -2.68 4.95 84.86 0.42 -2.26 16 17 N -0.94 -53.86 11.13 21.65 0.24 -53.62 16 18 Si 0.96 43.13 29.59 68.60 2.03 45.16 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 22 C 0.10 3.79 6.73 86.36 0.58 4.37 16 23 C 0.05 1.55 6.60 72.08 0.48 2.02 16 24 O -0.38 -11.75 9.97 -148.98 -1.49 -13.24 16 25 C -0.10 -1.48 4.71 30.73 0.14 -1.34 16 26 C -0.12 -1.68 6.03 29.71 0.18 -1.50 16 27 C 0.51 9.83 7.47 87.71 0.66 10.49 16 28 O -0.60 -16.43 15.95 -3.04 -0.05 -16.48 16 29 H 0.07 1.29 6.59 -2.39 -0.02 1.27 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 0.86 7.84 -2.39 -0.02 0.84 16 33 H 0.07 0.98 8.11 -2.39 -0.02 0.96 16 34 H 0.42 6.68 6.88 -92.71 -0.64 6.04 16 35 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.08 1.70 6.87 -2.39 -0.02 1.68 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.93 6.12 -2.39 -0.01 1.91 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.07 3.39 6.14 -2.39 -0.01 3.38 16 42 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.07 2.49 7.96 -2.39 -0.02 2.47 16 44 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.06 1.64 6.25 -2.39 -0.01 1.63 16 46 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 48 H 0.09 1.39 7.90 -2.39 -0.02 1.37 16 49 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -73.21 388.79 1.15 -72.06 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.30 Total: 17.71 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: 7.02 Total: 26.22 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -6.62 Total: -113.31 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -1.58 Total: -47.84 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -73.21 1.15 -72.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108422203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.615 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds