Wall clock time and date at job start Sat Apr 11 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45760 * 117.94795 * 2 1 4 4 C 1.52914 * 110.49288 * 199.07586 * 3 2 1 5 5 H 1.09004 * 109.60406 * 69.16357 * 4 3 2 6 6 C 1.50696 * 109.60430 * 189.49011 * 4 3 2 7 7 O 1.21286 * 119.99804 * 119.68009 * 6 4 3 8 8 N 1.34779 * 120.00271 * 299.67315 * 6 4 3 9 9 C 1.46499 * 120.00077 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47057 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.51424 * 59.89602 * 10 9 8 12 12 C 1.53291 * 109.51308 * 180.02562 * 10 9 8 13 13 N 1.47150 * 108.38576 * 172.22402 * 12 10 9 14 14 C 1.36939 * 120.98095 * 129.43797 * 13 12 10 15 15 H 1.07992 * 120.00435 * 333.76151 * 14 13 12 16 16 C 1.38814 * 119.99515 * 153.76215 * 14 13 12 17 17 N 1.31622 * 120.00108 * 160.00923 * 16 14 13 18 18 Si 1.86801 * 120.00240 * 340.00609 * 16 14 13 19 19 H 1.48499 * 109.47016 * 91.87603 * 18 16 14 20 20 H 1.48506 * 109.47009 * 211.87482 * 18 16 14 21 21 H 1.48497 * 109.47000 * 331.87343 * 18 16 14 22 22 C 1.47149 * 118.03641 * 309.46530 * 13 12 10 23 23 C 1.53297 * 108.38742 * 50.53063 * 22 13 12 24 24 O 1.42957 * 109.22082 * 307.70358 * 23 22 13 25 25 C 1.53342 * 108.80931 * 309.33175 * 4 3 2 26 26 C 1.53030 * 108.44070 * 67.30072 * 25 4 3 27 27 C 1.33352 * 117.94917 * 180.02562 * 2 1 3 28 28 O 1.21277 * 118.24737 * 357.79593 * 27 2 1 29 29 H 1.09003 * 109.47060 * 89.99787 * 1 2 3 30 30 H 1.08994 * 109.46832 * 209.99940 * 1 2 3 31 31 H 1.09003 * 109.46968 * 329.99724 * 1 2 3 32 32 H 1.09000 * 109.29865 * 78.76207 * 3 2 1 33 33 H 1.09011 * 109.13032 * 319.28601 * 3 2 1 34 34 H 0.96998 * 119.99706 * 359.97438 * 8 6 4 35 35 H 1.08995 * 109.47333 * 300.00108 * 9 8 6 36 36 H 1.08994 * 109.47083 * 60.00534 * 9 8 6 37 37 H 1.08999 * 109.46763 * 59.99720 * 11 10 9 38 38 H 1.09001 * 109.47257 * 180.02562 * 11 10 9 39 39 H 1.09008 * 109.47092 * 300.00398 * 11 10 9 40 40 H 1.08998 * 109.67913 * 291.94687 * 12 10 9 41 41 H 1.09001 * 109.68456 * 52.46554 * 12 10 9 42 42 H 0.96995 * 120.00380 * 179.97438 * 17 16 14 43 43 H 1.08998 * 109.68371 * 170.25609 * 22 13 12 44 44 H 1.08999 * 109.68110 * 290.81171 * 22 13 12 45 45 H 1.09006 * 109.50960 * 67.62543 * 23 22 13 46 46 H 1.08994 * 109.51338 * 187.72139 * 23 22 13 47 47 H 1.08998 * 109.67694 * 187.18561 * 25 4 3 48 48 H 1.09007 * 109.67146 * 307.71070 * 25 4 3 49 49 H 1.09005 * 109.43891 * 191.12157 * 26 25 4 50 50 H 1.08994 * 109.25382 * 71.44762 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1261 -0.4681 5 1 3.6102 0.8755 -1.5289 6 6 4.3462 2.4125 -0.2415 7 8 5.3164 2.4280 0.4863 8 7 3.9403 3.5458 -0.8476 9 6 4.6712 4.7963 -0.6277 10 6 4.0081 5.9215 -1.4248 11 6 2.5585 6.0883 -0.9644 12 6 4.7724 7.2304 -1.1959 13 7 4.2344 8.2484 -2.1121 14 6 3.8525 9.4801 -1.6514 15 1 3.5368 9.5989 -0.6255 16 6 3.8711 10.5760 -2.5032 17 7 3.1589 11.6450 -2.2160 18 14 4.9071 10.5338 -4.0570 19 1 4.0841 10.0332 -5.1872 20 1 5.3918 11.9031 -4.3661 21 1 6.0689 9.6318 -3.8529 22 6 4.1183 7.9035 -3.5379 23 6 3.3859 6.5618 -3.6528 24 8 4.0332 5.5991 -2.8174 25 6 4.2518 -0.0021 0.3363 26 6 3.5839 -1.3239 -0.0492 27 6 2.0900 -1.1780 -0.0005 28 8 1.4160 -2.1854 0.0401 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 2.1398 1.6998 1.0090 33 1 1.6259 1.9691 -0.6718 34 1 3.1647 3.5333 -1.4300 35 1 4.6549 5.0449 0.4334 36 1 5.7032 4.6767 -0.9572 37 1 2.5407 6.3360 0.0970 38 1 2.0867 6.8897 -1.5329 39 1 2.0155 5.1577 -1.1295 40 1 4.6395 7.5576 -0.1647 41 1 5.8324 7.0768 -1.3985 42 1 3.1722 12.4109 -2.8109 43 1 3.5522 8.6765 -4.0576 44 1 5.1123 7.8179 -3.9769 45 1 2.3508 6.6836 -3.3334 46 1 3.4098 6.2214 -4.6879 47 1 5.3162 -0.0455 0.1059 48 1 4.1138 0.1790 1.4024 49 1 3.8944 -2.1036 0.6464 50 1 3.8881 -1.5992 -1.0589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108422206.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:00 Heat of formation + Delta-G solvation = -84.156328 kcal Electronic energy + Delta-G solvation = -30883.111224 eV Core-core repulsion = 26718.385241 eV Total energy + Delta-G solvation = -4164.725983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.13342 -39.98285 -39.14784 -36.64137 -35.40005 -34.58760 -34.35170 -32.37909 -31.52770 -30.39033 -28.50160 -27.57938 -26.77330 -26.02322 -24.94984 -23.30189 -23.13323 -21.58399 -20.58635 -19.26656 -19.04284 -17.85158 -17.06504 -16.98085 -16.66035 -16.25656 -16.05134 -15.72112 -15.51209 -15.25281 -14.73993 -14.61528 -14.26552 -14.21672 -13.95697 -13.93582 -13.76451 -13.46415 -13.01732 -12.83528 -12.67531 -12.50263 -12.40140 -12.21941 -12.10268 -11.95543 -11.69801 -11.66343 -11.53613 -11.37907 -11.10392 -10.91320 -10.46228 -10.37213 -10.07265 -10.03596 -9.76201 -9.61207 -9.49610 -9.18642 -9.14544 -8.66231 -7.11319 -6.06726 -3.44487 2.26514 2.32525 2.61478 2.96967 3.20999 3.40510 3.42690 3.91136 4.07127 4.13690 4.20967 4.31219 4.41009 4.64488 4.77394 4.79861 4.86228 4.90260 5.01580 5.06899 5.11882 5.14046 5.20948 5.24646 5.29024 5.39380 5.48574 5.57758 5.61861 5.68522 5.72478 5.75397 5.76728 5.88239 5.92489 5.97836 6.11396 6.13994 6.29853 6.38726 6.40606 6.48099 6.64560 6.99431 7.33224 7.51425 7.75994 7.76713 8.01960 8.18457 8.76192 9.57228 9.92625 11.08735 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024912 B = 0.002378 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.696094 B =11772.959247 C =12116.025071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.606 5.606 3 C 0.123 3.877 4 C -0.125 4.125 5 H 0.108 0.892 6 C 0.521 3.479 7 O -0.535 6.535 8 N -0.715 5.715 9 C 0.137 3.863 10 C 0.086 3.914 11 C -0.167 4.167 12 C 0.131 3.869 13 N -0.603 5.603 14 C -0.262 4.262 15 H 0.089 0.911 16 C 0.024 3.976 17 N -0.906 5.906 18 Si 0.884 3.116 19 H -0.288 1.288 20 H -0.302 1.302 21 H -0.271 1.271 22 C 0.089 3.911 23 C 0.046 3.954 24 O -0.380 6.380 25 C -0.103 4.103 26 C -0.134 4.134 27 C 0.515 3.485 28 O -0.555 6.555 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.404 0.596 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.264 0.736 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.106 0.894 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 -21.587 2.229 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C 0.000 4.000 4 C -0.147 4.147 5 H 0.126 0.874 6 C 0.305 3.695 7 O -0.412 6.412 8 N -0.367 5.367 9 C 0.013 3.987 10 C 0.045 3.955 11 C -0.224 4.224 12 C 0.004 3.996 13 N -0.328 5.328 14 C -0.389 4.389 15 H 0.106 0.894 16 C -0.175 4.175 17 N -0.549 5.549 18 Si 0.714 3.286 19 H -0.216 1.216 20 H -0.230 1.230 21 H -0.196 1.196 22 C -0.037 4.037 23 C -0.032 4.032 24 O -0.300 6.300 25 C -0.141 4.141 26 C -0.174 4.174 27 C 0.304 3.696 28 O -0.433 6.433 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.239 0.761 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.097 0.903 49 H 0.124 0.876 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.192 -22.031 2.687 22.302 hybrid contribution 0.063 0.674 -1.325 1.488 sum -2.128 -21.357 1.362 21.506 Atomic orbital electron populations 1.21744 0.79060 1.03596 1.02317 1.47184 1.07663 1.05810 1.73302 1.21358 0.91096 0.84995 1.02577 1.21658 0.94844 0.94851 1.03321 0.87387 1.20136 0.84754 0.84493 0.80104 1.90732 1.27292 1.85674 1.37506 1.45981 1.33029 1.08550 1.49111 1.21386 0.96195 0.81538 0.99541 1.22241 0.96065 0.94974 0.82236 1.22259 0.95903 1.01778 1.02475 1.21456 0.95015 0.87458 0.95661 1.44300 1.73879 1.12505 1.02112 1.18883 1.38379 0.82733 0.98943 0.89378 1.25246 0.98689 0.95283 0.98265 1.69813 1.39989 1.06278 1.38776 0.86978 0.82073 0.75988 0.83525 1.21626 1.23034 1.19559 1.22028 0.98521 0.95827 0.87313 1.23091 0.96398 0.90102 0.93607 1.87834 1.78867 1.46987 1.16275 1.21490 1.00994 0.91001 1.00635 1.21690 0.90678 0.99811 1.05221 1.20255 0.91118 0.82607 0.75622 1.90718 1.66570 1.35707 1.50346 0.92357 0.89989 0.90985 0.90667 0.89812 0.76095 0.89852 0.90639 0.91695 0.90173 0.93459 0.90796 0.94843 0.92616 0.90074 0.94810 0.92555 0.89677 0.89140 0.90307 0.87607 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.24 59.85 0.61 1.14 16 2 N -0.61 -4.84 3.21 -182.85 -0.59 -5.42 16 3 C 0.12 0.79 5.49 -4.49 -0.02 0.76 16 4 C -0.12 -0.90 2.59 -91.64 -0.24 -1.13 16 5 H 0.11 0.65 8.13 -51.93 -0.42 0.23 16 6 C 0.52 5.34 7.14 -10.99 -0.08 5.26 16 7 O -0.54 -7.49 15.89 5.55 0.09 -7.40 16 8 N -0.72 -7.17 5.06 -60.30 -0.31 -7.47 16 9 C 0.14 1.70 4.82 -4.04 -0.02 1.68 16 10 C 0.09 1.24 0.76 -90.47 -0.07 1.17 16 11 C -0.17 -2.24 7.92 37.16 0.29 -1.94 16 12 C 0.13 2.36 5.40 -3.54 -0.02 2.34 16 13 N -0.60 -13.27 2.36 -171.84 -0.40 -13.68 16 14 C -0.26 -6.85 10.10 -15.06 -0.15 -7.00 16 15 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 16 C 0.02 0.67 5.26 -17.43 -0.09 0.58 16 17 N -0.91 -26.64 13.97 55.49 0.78 -25.87 16 18 Si 0.88 21.50 24.28 -169.99 -4.13 17.38 16 19 H -0.29 -6.69 6.58 56.52 0.37 -6.32 16 20 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 21 H -0.27 -6.55 6.55 56.52 0.37 -6.18 16 22 C 0.09 1.80 4.38 -3.53 -0.02 1.79 16 23 C 0.05 0.74 6.60 37.31 0.25 0.98 16 24 O -0.38 -5.86 9.98 -35.23 -0.35 -6.21 16 25 C -0.10 -0.75 4.72 -26.54 -0.13 -0.87 16 26 C -0.13 -0.94 6.03 -28.12 -0.17 -1.11 16 27 C 0.52 5.05 7.47 -11.87 -0.09 4.96 16 28 O -0.55 -7.51 16.18 5.56 0.09 -7.42 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.68 7.13 -51.93 -0.37 0.31 16 31 H 0.07 0.36 8.01 -51.93 -0.42 -0.06 16 32 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 33 H 0.08 0.41 7.82 -51.92 -0.41 0.00 16 34 H 0.40 3.43 6.85 -40.82 -0.28 3.15 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.31 6.12 -51.93 -0.32 0.99 16 39 H 0.05 0.50 6.86 -51.92 -0.36 0.15 16 40 H 0.07 1.30 7.95 -51.93 -0.41 0.89 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.08 1.79 4.61 -51.93 -0.24 1.55 16 44 H 0.03 0.71 6.87 -51.93 -0.36 0.35 16 45 H 0.06 0.89 6.25 -51.93 -0.32 0.56 16 46 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.09 0.69 7.90 -51.93 -0.41 0.28 16 48 H 0.08 0.63 8.13 -51.92 -0.42 0.20 16 49 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -33.54 382.31 -7.15 -40.70 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.16 Total: 1.04 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 0.06 Total: 8.60 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.52 Total: -52.44 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.17 Total: -21.04 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.13 Total: 17.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.54 -7.15 -40.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108422206.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.459 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds