Wall clock time and date at job start Sat Apr 11 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45760 * 117.94795 * 2 1 4 4 C 1.52914 * 110.49288 * 199.07586 * 3 2 1 5 5 H 1.09004 * 109.60406 * 69.16357 * 4 3 2 6 6 C 1.50696 * 109.60430 * 189.49011 * 4 3 2 7 7 O 1.21286 * 119.99804 * 119.68009 * 6 4 3 8 8 N 1.34779 * 120.00271 * 299.67315 * 6 4 3 9 9 C 1.46499 * 120.00077 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47057 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.51424 * 59.89602 * 10 9 8 12 12 C 1.53291 * 109.51308 * 180.02562 * 10 9 8 13 13 N 1.47150 * 108.38576 * 172.22402 * 12 10 9 14 14 C 1.36939 * 120.98095 * 129.43797 * 13 12 10 15 15 H 1.07992 * 120.00435 * 333.76151 * 14 13 12 16 16 C 1.38814 * 119.99515 * 153.76215 * 14 13 12 17 17 N 1.31622 * 120.00108 * 160.00923 * 16 14 13 18 18 Si 1.86801 * 120.00240 * 340.00609 * 16 14 13 19 19 H 1.48499 * 109.47016 * 91.87603 * 18 16 14 20 20 H 1.48506 * 109.47009 * 211.87482 * 18 16 14 21 21 H 1.48497 * 109.47000 * 331.87343 * 18 16 14 22 22 C 1.47149 * 118.03641 * 309.46530 * 13 12 10 23 23 C 1.53297 * 108.38742 * 50.53063 * 22 13 12 24 24 O 1.42957 * 109.22082 * 307.70358 * 23 22 13 25 25 C 1.53342 * 108.80931 * 309.33175 * 4 3 2 26 26 C 1.53030 * 108.44070 * 67.30072 * 25 4 3 27 27 C 1.33352 * 117.94917 * 180.02562 * 2 1 3 28 28 O 1.21277 * 118.24737 * 357.79593 * 27 2 1 29 29 H 1.09003 * 109.47060 * 89.99787 * 1 2 3 30 30 H 1.08994 * 109.46832 * 209.99940 * 1 2 3 31 31 H 1.09003 * 109.46968 * 329.99724 * 1 2 3 32 32 H 1.09000 * 109.29865 * 78.76207 * 3 2 1 33 33 H 1.09011 * 109.13032 * 319.28601 * 3 2 1 34 34 H 0.96998 * 119.99706 * 359.97438 * 8 6 4 35 35 H 1.08995 * 109.47333 * 300.00108 * 9 8 6 36 36 H 1.08994 * 109.47083 * 60.00534 * 9 8 6 37 37 H 1.08999 * 109.46763 * 59.99720 * 11 10 9 38 38 H 1.09001 * 109.47257 * 180.02562 * 11 10 9 39 39 H 1.09008 * 109.47092 * 300.00398 * 11 10 9 40 40 H 1.08998 * 109.67913 * 291.94687 * 12 10 9 41 41 H 1.09001 * 109.68456 * 52.46554 * 12 10 9 42 42 H 0.96995 * 120.00380 * 179.97438 * 17 16 14 43 43 H 1.08998 * 109.68371 * 170.25609 * 22 13 12 44 44 H 1.08999 * 109.68110 * 290.81171 * 22 13 12 45 45 H 1.09006 * 109.50960 * 67.62543 * 23 22 13 46 46 H 1.08994 * 109.51338 * 187.72139 * 23 22 13 47 47 H 1.08998 * 109.67694 * 187.18561 * 25 4 3 48 48 H 1.09007 * 109.67146 * 307.71070 * 25 4 3 49 49 H 1.09005 * 109.43891 * 191.12157 * 26 25 4 50 50 H 1.08994 * 109.25382 * 71.44762 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1261 -0.4681 5 1 3.6102 0.8755 -1.5289 6 6 4.3462 2.4125 -0.2415 7 8 5.3164 2.4280 0.4863 8 7 3.9403 3.5458 -0.8476 9 6 4.6712 4.7963 -0.6277 10 6 4.0081 5.9215 -1.4248 11 6 2.5585 6.0883 -0.9644 12 6 4.7724 7.2304 -1.1959 13 7 4.2344 8.2484 -2.1121 14 6 3.8525 9.4801 -1.6514 15 1 3.5368 9.5989 -0.6255 16 6 3.8711 10.5760 -2.5032 17 7 3.1589 11.6450 -2.2160 18 14 4.9071 10.5338 -4.0570 19 1 4.0841 10.0332 -5.1872 20 1 5.3918 11.9031 -4.3661 21 1 6.0689 9.6318 -3.8529 22 6 4.1183 7.9035 -3.5379 23 6 3.3859 6.5618 -3.6528 24 8 4.0332 5.5991 -2.8174 25 6 4.2518 -0.0021 0.3363 26 6 3.5839 -1.3239 -0.0492 27 6 2.0900 -1.1780 -0.0005 28 8 1.4160 -2.1854 0.0401 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 2.1398 1.6998 1.0090 33 1 1.6259 1.9691 -0.6718 34 1 3.1647 3.5333 -1.4300 35 1 4.6549 5.0449 0.4334 36 1 5.7032 4.6767 -0.9572 37 1 2.5407 6.3360 0.0970 38 1 2.0867 6.8897 -1.5329 39 1 2.0155 5.1577 -1.1295 40 1 4.6395 7.5576 -0.1647 41 1 5.8324 7.0768 -1.3985 42 1 3.1722 12.4109 -2.8109 43 1 3.5522 8.6765 -4.0576 44 1 5.1123 7.8179 -3.9769 45 1 2.3508 6.6836 -3.3334 46 1 3.4098 6.2214 -4.6879 47 1 5.3162 -0.0455 0.1059 48 1 4.1138 0.1790 1.4024 49 1 3.8944 -2.1036 0.6464 50 1 3.8881 -1.5992 -1.0589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108422206.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:59 Heat of formation + Delta-G solvation = -109.268040 kcal Electronic energy + Delta-G solvation = -30884.200150 eV Core-core repulsion = 26718.385241 eV Total energy + Delta-G solvation = -4165.814909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84916 -41.03663 -40.23251 -37.40484 -36.75969 -35.89613 -34.98687 -33.76473 -33.23567 -31.11900 -29.90710 -28.17184 -28.05845 -27.37164 -25.56917 -24.79695 -24.05913 -22.97124 -21.42369 -20.50314 -19.74821 -18.98843 -18.55625 -17.77210 -17.45396 -17.29695 -17.27989 -16.85035 -16.51333 -16.09925 -15.97887 -15.80671 -15.51499 -15.41923 -15.22911 -14.89407 -14.63673 -14.35598 -14.20161 -13.98236 -13.75272 -13.59973 -13.41828 -13.26493 -13.22969 -12.92453 -12.84500 -12.71623 -12.57275 -12.33964 -12.26528 -12.11317 -12.07394 -11.92275 -11.55307 -11.26735 -11.06833 -10.89164 -10.77753 -10.47051 -10.07127 -9.79944 -8.93837 -8.18184 -5.50898 1.26487 1.41157 1.48390 1.54023 1.58358 1.95664 2.16479 2.38543 2.70182 3.02575 3.22899 3.46145 3.54036 3.65295 3.70756 3.84825 3.92351 4.01425 4.22111 4.24492 4.27412 4.31739 4.35093 4.41930 4.48200 4.53236 4.59705 4.63651 4.70194 4.71581 4.74729 4.79917 4.87422 4.88580 4.96003 4.97447 5.02691 5.04813 5.09261 5.19385 5.34100 5.40947 5.42930 5.79544 6.09643 6.25444 6.35714 6.55233 6.83326 7.07954 7.23147 7.55813 7.96110 9.01119 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024912 B = 0.002378 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.696094 B =11772.959247 C =12116.025071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.603 5.603 3 C 0.123 3.877 4 C -0.116 4.116 5 H 0.129 0.871 6 C 0.526 3.474 7 O -0.574 6.574 8 N -0.706 5.706 9 C 0.147 3.853 10 C 0.097 3.903 11 C -0.161 4.161 12 C 0.123 3.877 13 N -0.616 5.616 14 C -0.242 4.242 15 H 0.059 0.941 16 C -0.033 4.033 17 N -0.954 5.954 18 Si 0.943 3.057 19 H -0.269 1.269 20 H -0.314 1.314 21 H -0.269 1.269 22 C 0.080 3.920 23 C 0.056 3.944 24 O -0.375 6.375 25 C -0.098 4.098 26 C -0.126 4.126 27 C 0.508 3.492 28 O -0.601 6.601 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.415 0.585 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.032 0.968 42 H 0.262 0.738 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.118 0.882 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.109 0.891 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 -23.674 0.994 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.335 5.335 3 C 0.000 4.000 4 C -0.137 4.137 5 H 0.146 0.854 6 C 0.312 3.688 7 O -0.453 6.453 8 N -0.358 5.358 9 C 0.022 3.978 10 C 0.056 3.944 11 C -0.218 4.218 12 C -0.003 4.003 13 N -0.341 5.341 14 C -0.371 4.371 15 H 0.077 0.923 16 C -0.228 4.228 17 N -0.601 5.601 18 Si 0.773 3.227 19 H -0.196 1.196 20 H -0.244 1.244 21 H -0.194 1.194 22 C -0.045 4.045 23 C -0.022 4.022 24 O -0.294 6.294 25 C -0.136 4.136 26 C -0.165 4.165 27 C 0.298 3.702 28 O -0.483 6.483 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.252 0.748 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.080 0.920 46 H 0.136 0.864 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.128 0.872 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.342 -24.148 1.430 24.303 hybrid contribution 0.117 1.305 -0.835 1.554 sum -2.225 -22.842 0.596 22.958 Atomic orbital electron populations 1.21837 0.78519 1.03785 1.02903 1.47266 1.08209 1.05918 1.72065 1.21481 0.90607 0.84488 1.03412 1.21608 0.94780 0.92806 1.04514 0.85358 1.20545 0.84186 0.85071 0.78998 1.90730 1.29154 1.86236 1.39184 1.45842 1.33051 1.07685 1.49218 1.21132 0.95599 0.81863 0.99204 1.22077 0.96326 0.93666 0.82299 1.22195 0.95061 1.02505 1.02055 1.21662 0.95430 0.88383 0.94836 1.44382 1.74307 1.11862 1.03572 1.18820 1.36169 0.84531 0.97610 0.92299 1.25822 1.00133 0.95227 1.01622 1.69937 1.42291 1.07280 1.40556 0.86002 0.80582 0.75120 0.80990 1.19561 1.24353 1.19357 1.22128 0.98672 0.97906 0.85797 1.23023 0.95836 0.87781 0.95562 1.87857 1.78816 1.46300 1.16457 1.21426 1.00891 0.91167 1.00161 1.21659 0.88777 0.99775 1.06326 1.20732 0.92036 0.82500 0.74966 1.90701 1.67621 1.37259 1.52712 0.91567 0.91930 0.88687 0.90492 0.87288 0.74775 0.89469 0.91724 0.91460 0.93108 0.89900 0.91063 0.94984 0.92938 0.91906 0.95092 0.92021 0.86431 0.89350 0.91229 0.87244 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 10.24 127.77 1.31 2.15 16 2 N -0.60 -8.11 3.21 -851.60 -2.73 -10.84 16 3 C 0.12 1.12 5.49 86.49 0.47 1.59 16 4 C -0.12 -1.27 2.59 -11.46 -0.03 -1.30 16 5 H 0.13 0.97 8.13 -2.38 -0.02 0.95 16 6 C 0.53 9.18 7.14 87.66 0.63 9.81 16 7 O -0.57 -14.93 15.89 -3.05 -0.05 -14.97 16 8 N -0.71 -11.55 5.06 -463.07 -2.34 -13.90 16 9 C 0.15 3.24 4.82 86.38 0.42 3.66 16 10 C 0.10 2.56 0.76 -10.69 -0.01 2.55 16 11 C -0.16 -3.87 7.92 71.98 0.57 -3.30 16 12 C 0.12 4.30 5.40 86.35 0.47 4.77 16 13 N -0.62 -26.73 2.36 -697.57 -1.64 -28.37 16 14 C -0.24 -12.87 10.10 84.03 0.85 -12.02 16 15 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 16 C -0.03 -1.85 5.26 84.86 0.45 -1.40 16 17 N -0.95 -57.76 13.97 21.65 0.30 -57.46 16 18 Si 0.94 44.84 24.28 68.60 1.67 46.51 16 19 H -0.27 -11.81 6.58 99.48 0.65 -11.15 16 20 H -0.31 -15.44 7.11 99.48 0.71 -14.74 16 21 H -0.27 -12.50 6.55 99.48 0.65 -11.84 16 22 C 0.08 3.10 4.38 86.35 0.38 3.48 16 23 C 0.06 1.60 6.60 72.08 0.48 2.08 16 24 O -0.38 -10.21 9.98 -148.98 -1.49 -11.70 16 25 C -0.10 -1.21 4.72 30.72 0.14 -1.06 16 26 C -0.13 -1.52 6.03 29.69 0.18 -1.34 16 27 C 0.51 9.14 7.47 87.71 0.66 9.80 16 28 O -0.60 -16.00 16.18 -3.02 -0.05 -16.05 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 1.00 7.13 -2.39 -0.02 0.99 16 31 H 0.09 0.66 8.01 -2.39 -0.02 0.64 16 32 H 0.08 0.74 8.11 -2.39 -0.02 0.72 16 33 H 0.11 0.50 7.82 -2.38 -0.02 0.48 16 34 H 0.41 5.03 6.85 -92.71 -0.63 4.40 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.56 6.12 -2.39 -0.01 1.54 16 39 H 0.08 1.39 6.86 -2.38 -0.02 1.38 16 40 H 0.07 2.49 7.95 -2.39 -0.02 2.48 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 43 H 0.06 2.67 4.61 -2.39 -0.01 2.66 16 44 H 0.03 1.23 6.87 -2.39 -0.02 1.21 16 45 H 0.06 1.75 6.25 -2.38 -0.01 1.73 16 46 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 47 H 0.09 1.17 7.90 -2.39 -0.02 1.15 16 48 H 0.07 0.99 8.13 -2.38 -0.02 0.97 16 49 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 50 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -75.06 382.31 0.82 -74.24 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.20 Total: 13.08 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 6.95 Total: 19.46 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -6.42 Total: -110.56 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.58 Total: -42.73 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.67 Total: 46.51 kcal Total: -75.06 0.82 -74.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108422206.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.029 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds