Wall clock time and date at job start Sat Apr 11 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.54096 * 2 1 4 4 O 1.21282 * 119.99715 * 241.14536 * 3 2 1 5 5 N 1.34774 * 119.99935 * 61.14929 * 3 2 1 6 6 C 1.47086 * 120.87788 * 174.45461 * 5 3 2 7 7 C 1.53239 * 108.68058 * 231.06311 * 6 5 3 8 8 N 1.46956 * 109.31155 * 306.47263 * 7 6 5 9 9 C 1.46906 * 110.96618 * 187.06294 * 8 7 6 10 10 C 1.50702 * 109.46910 * 65.49467 * 9 8 7 11 11 O 1.21289 * 119.99981 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99764 * 180.02562 * 10 9 8 13 13 C 1.37101 * 120.00116 * 180.02562 * 12 10 9 14 14 H 1.07995 * 119.99831 * 0.02562 * 13 12 10 15 15 C 1.38948 * 120.00229 * 179.97438 * 13 12 10 16 16 N 1.31403 * 120.00070 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99883 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47272 * 89.99785 * 17 15 13 19 19 H 1.48504 * 109.46922 * 209.99874 * 17 15 13 20 20 H 1.48499 * 109.47017 * 329.99787 * 17 15 13 21 21 C 1.46895 * 111.44654 * 62.80968 * 8 7 6 22 22 C 1.47072 * 120.88472 * 354.43301 * 5 3 2 23 23 C 1.53171 * 109.61321 * 120.22168 * 2 1 3 24 24 C 1.53087 * 109.16358 * 176.89252 * 23 2 1 25 25 O 1.42907 * 109.41676 * 302.38979 * 24 23 2 26 26 C 1.42906 * 114.09130 * 61.15584 * 25 24 23 27 27 C 1.53087 * 109.41711 * 298.84245 * 26 25 24 28 28 H 1.09000 * 109.46934 * 69.51250 * 1 2 3 29 29 H 1.08997 * 109.47163 * 189.50763 * 1 2 3 30 30 H 1.08992 * 109.47300 * 309.50899 * 1 2 3 31 31 H 1.09000 * 109.62996 * 350.87240 * 6 5 3 32 32 H 1.09000 * 109.62789 * 111.25811 * 6 5 3 33 33 H 1.09005 * 109.49386 * 66.23141 * 7 6 5 34 34 H 1.09000 * 109.48850 * 186.30774 * 7 6 5 35 35 H 1.08998 * 109.46844 * 185.49203 * 9 8 7 36 36 H 1.08997 * 109.47030 * 305.49611 * 9 8 7 37 37 H 0.97002 * 119.99804 * 359.97438 * 12 10 9 38 38 H 0.97006 * 120.00043 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.49552 * 177.01910 * 21 8 7 40 40 H 1.09002 * 109.49053 * 56.94080 * 21 8 7 41 41 H 1.09006 * 109.63212 * 248.54976 * 22 5 3 42 42 H 1.09002 * 109.62995 * 8.93047 * 22 5 3 43 43 H 1.09001 * 109.52285 * 296.79899 * 23 2 1 44 44 H 1.08995 * 109.52595 * 56.98727 * 23 2 1 45 45 H 1.09003 * 109.48845 * 182.40473 * 24 23 2 46 46 H 1.09000 * 109.48294 * 62.37383 * 24 23 2 47 47 H 1.09003 * 109.47320 * 178.86009 * 26 25 24 48 48 H 1.08995 * 109.49251 * 58.83923 * 26 25 24 49 49 H 1.09007 * 109.52054 * 297.70596 * 27 26 25 50 50 H 1.09001 * 109.52289 * 177.52235 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.7146 1.8221 -0.9200 5 7 1.7288 2.2436 1.0223 6 6 2.3081 3.5931 1.1035 7 6 2.9169 3.7829 2.4969 8 7 1.9039 3.4749 3.5160 9 6 2.3942 3.8046 4.8610 10 6 2.5911 5.2945 4.9726 11 8 2.3474 6.0111 4.0249 12 7 3.0388 5.8305 6.1253 13 6 3.2175 7.1860 6.2271 14 1 2.9990 7.8243 5.3837 15 6 3.6786 7.7387 7.4156 16 7 3.8503 9.0379 7.5129 17 14 4.0558 6.6348 8.8745 18 1 5.4751 6.2024 8.8142 19 1 3.8193 7.3828 10.1354 20 1 3.1727 5.4416 8.8337 21 6 1.4760 2.0716 3.4410 22 6 0.8071 1.8168 2.0860 23 6 2.0442 -0.7262 1.2467 24 6 3.5730 -0.7883 1.1975 25 8 3.9834 -1.4477 -0.0021 26 6 3.5714 -0.7877 -1.2008 27 6 2.0425 -0.7256 -1.2479 28 1 -0.3633 0.3597 -0.9627 29 1 -0.3633 -1.0135 0.1697 30 1 -0.3633 0.6537 0.7928 31 1 3.0843 3.7046 0.3464 32 1 1.5281 4.3368 0.9404 33 1 3.7663 3.1104 2.6174 34 1 3.2502 4.8144 2.6107 35 1 1.6660 3.4777 5.6033 36 1 3.3436 3.2985 5.0358 37 1 3.2340 5.2573 6.8831 38 1 4.1718 9.4238 8.3428 39 1 0.7661 1.8645 4.2418 40 1 2.3438 1.4206 3.5463 41 1 -0.1179 2.3898 2.0208 42 1 0.5882 0.7547 1.9765 43 1 1.7302 -0.1849 2.1391 44 1 1.6393 -1.7379 1.2720 45 1 3.9425 -1.3415 2.0610 46 1 3.9786 0.2233 1.2132 47 1 3.9396 -1.3406 -2.0650 48 1 3.9770 0.2239 -1.2167 49 1 1.6375 -1.7374 -1.2730 50 1 1.7272 -0.1838 -2.1396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113433252.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:07 Heat of formation + Delta-G solvation = -79.412468 kcal Electronic energy + Delta-G solvation = -31530.550447 eV Core-core repulsion = 27366.030173 eV Total energy + Delta-G solvation = -4164.520274 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52989 -39.28917 -38.37389 -37.38331 -35.56958 -34.46967 -33.84140 -31.75190 -31.57532 -30.95615 -29.23447 -28.66279 -26.14820 -24.33647 -24.22948 -23.59543 -23.32536 -22.18680 -20.46837 -19.45833 -18.91360 -18.32013 -16.85432 -16.72901 -16.27720 -16.13949 -15.85974 -15.72790 -15.30942 -15.12120 -14.91900 -14.60947 -14.36490 -14.27674 -14.13472 -14.04490 -13.26449 -13.25153 -13.14174 -12.76354 -12.59035 -12.55408 -12.32427 -12.23656 -12.19783 -11.86238 -11.74444 -11.62765 -11.32991 -11.29141 -11.11938 -11.01710 -10.80979 -10.66364 -10.63424 -10.01902 -9.83206 -9.59531 -9.51333 -8.96381 -8.53078 -8.23010 -8.06856 -6.35044 -3.86731 2.41323 2.77572 2.98578 3.03120 3.11902 3.63569 3.67090 3.76445 4.01769 4.06337 4.14956 4.37990 4.52437 4.62651 4.65341 4.73639 4.83985 4.92958 4.96859 5.07281 5.14747 5.16482 5.18868 5.24447 5.26541 5.33084 5.35487 5.42774 5.45460 5.52166 5.55574 5.60330 5.63232 5.70595 5.72467 5.74284 5.79125 5.85442 5.89001 6.04030 6.11550 6.42821 6.95724 6.96384 7.14917 7.27800 7.53680 7.98580 8.10017 8.55303 8.90843 9.37846 9.77686 10.77940 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023462 B = 0.002496 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.147212 B =11214.640503 C =11444.834019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.082 4.082 3 C 0.524 3.476 4 O -0.540 6.540 5 N -0.607 5.607 6 C 0.119 3.881 7 C 0.041 3.959 8 N -0.514 5.514 9 C 0.044 3.956 10 C 0.451 3.549 11 O -0.559 6.559 12 N -0.589 5.589 13 C -0.305 4.305 14 H 0.120 0.880 15 C 0.042 3.958 16 N -0.880 5.880 17 Si 0.879 3.121 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.269 1.269 21 C 0.037 3.963 22 C 0.091 3.909 23 C -0.157 4.157 24 C 0.060 3.940 25 O -0.384 6.384 26 C 0.048 3.952 27 C -0.126 4.126 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.026 0.974 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.370 0.630 38 H 0.274 0.726 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 -23.986 -10.348 26.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.086 4.086 3 C 0.312 3.688 4 O -0.417 6.417 5 N -0.340 5.340 6 C -0.003 4.003 7 C -0.087 4.087 8 N -0.239 5.239 9 C -0.088 4.088 10 C 0.237 3.763 11 O -0.441 6.441 12 N -0.229 5.229 13 C -0.434 4.434 14 H 0.138 0.862 15 C -0.161 4.161 16 N -0.520 5.520 17 Si 0.706 3.294 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.195 1.195 21 C -0.092 4.092 22 C -0.032 4.032 23 C -0.194 4.194 24 C -0.017 4.017 25 O -0.302 6.302 26 C -0.028 4.028 27 C -0.164 4.164 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.126 0.874 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.066 0.934 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.886 -22.945 -11.454 26.311 hybrid contribution 0.744 -0.906 1.685 2.053 sum -5.142 -23.851 -9.768 26.281 Atomic orbital electron populations 1.22236 0.92144 1.03412 1.03668 1.20849 0.97534 0.92310 0.97860 1.20475 0.79871 0.86970 0.81524 1.90642 1.39399 1.76750 1.34916 1.48179 1.46232 1.15687 1.23892 1.21755 0.99167 0.82190 0.97178 1.22683 0.91709 1.04102 0.90244 1.61457 1.40412 1.18670 1.03336 1.21887 0.99558 0.96290 0.91017 1.19601 0.83813 0.88715 0.84198 1.90528 1.54124 1.61810 1.37655 1.42218 1.60033 1.08446 1.12180 1.19421 1.41778 0.80808 1.01380 0.86230 1.25041 0.97520 0.95815 0.97749 1.69617 1.45070 1.09869 1.27424 0.86676 0.79163 0.80492 0.83071 1.19659 1.20152 1.19496 1.22546 0.99585 0.89495 0.97530 1.22500 0.93187 1.01482 0.86036 1.22627 0.97647 1.01881 0.97260 1.22538 0.93156 0.97824 0.88185 1.87904 1.77190 1.51345 1.13798 1.22836 0.93602 0.99261 0.87096 1.22019 0.97266 1.00375 0.96780 0.91658 0.91122 0.90494 0.89008 0.90259 0.95538 0.86498 0.89058 0.93321 0.79731 0.91569 0.89379 0.94608 0.90110 0.87445 0.89225 0.89662 0.88620 0.93382 0.89069 0.90673 0.90554 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.11 37.16 0.30 -0.74 16 2 C -0.08 -0.72 0.50 -155.48 -0.08 -0.79 16 3 C 0.52 6.25 5.14 -10.99 -0.06 6.19 16 4 O -0.54 -8.18 13.37 5.56 0.07 -8.11 16 5 N -0.61 -7.01 3.01 -172.46 -0.52 -7.53 16 6 C 0.12 1.65 6.57 -3.60 -0.02 1.62 16 7 C 0.04 0.61 5.26 -3.67 -0.02 0.59 16 8 N -0.51 -7.40 4.37 -235.71 -1.03 -8.43 16 9 C 0.04 0.67 5.45 -4.97 -0.03 0.65 16 10 C 0.45 9.71 7.44 -10.99 -0.08 9.62 16 11 O -0.56 -14.16 13.89 5.55 0.08 -14.09 16 12 N -0.59 -13.52 5.09 -10.96 -0.06 -13.57 16 13 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 14 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 16 N -0.88 -25.34 13.96 55.50 0.77 -24.57 16 17 Si 0.88 18.92 27.74 -169.99 -4.71 14.20 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.23 6.52 56.52 0.37 -4.87 16 21 C 0.04 0.38 5.37 -3.71 -0.02 0.36 16 22 C 0.09 0.81 4.13 -3.61 -0.01 0.80 16 23 C -0.16 -1.18 4.59 -26.60 -0.12 -1.30 16 24 C 0.06 0.57 6.62 37.20 0.25 0.82 16 25 O -0.38 -4.32 10.77 -35.23 -0.38 -4.70 16 26 C 0.05 0.51 6.55 37.20 0.24 0.75 16 27 C -0.13 -1.12 4.55 -26.60 -0.12 -1.24 16 28 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.08 0.47 4.64 -51.93 -0.24 0.23 16 31 H 0.09 1.32 7.10 -51.93 -0.37 0.95 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.12 2.17 5.76 -51.93 -0.30 1.87 16 35 H 0.09 1.20 7.97 -51.93 -0.41 0.79 16 36 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.37 7.43 5.76 -40.82 -0.24 7.19 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.09 0.73 7.99 -51.93 -0.41 0.31 16 40 H 0.04 0.34 7.75 -51.93 -0.40 -0.06 16 41 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 42 H 0.11 0.70 2.75 -51.93 -0.14 0.56 16 43 H 0.09 0.59 4.32 -51.93 -0.22 0.36 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.05 0.54 7.38 -51.93 -0.38 0.16 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.08 0.96 5.85 -51.93 -0.30 0.65 16 49 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 50 H 0.08 0.75 8.01 -51.93 -0.42 0.33 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -33.48 371.16 -7.82 -41.30 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.62 Total: 10.11 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -0.02 Total: 9.79 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.83 Total: -54.10 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.23 Total: -26.90 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.48 -7.82 -41.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113433252.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.113 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds