Wall clock time and date at job start Sat Apr 11 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.54096 * 2 1 4 4 O 1.21282 * 119.99715 * 241.14536 * 3 2 1 5 5 N 1.34774 * 119.99935 * 61.14929 * 3 2 1 6 6 C 1.47086 * 120.87788 * 174.45461 * 5 3 2 7 7 C 1.53239 * 108.68058 * 231.06311 * 6 5 3 8 8 N 1.46956 * 109.31155 * 306.47263 * 7 6 5 9 9 C 1.46906 * 110.96618 * 187.06294 * 8 7 6 10 10 C 1.50702 * 109.46910 * 65.49467 * 9 8 7 11 11 O 1.21289 * 119.99981 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99764 * 180.02562 * 10 9 8 13 13 C 1.37101 * 120.00116 * 180.02562 * 12 10 9 14 14 H 1.07995 * 119.99831 * 0.02562 * 13 12 10 15 15 C 1.38948 * 120.00229 * 179.97438 * 13 12 10 16 16 N 1.31403 * 120.00070 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99883 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47272 * 89.99785 * 17 15 13 19 19 H 1.48504 * 109.46922 * 209.99874 * 17 15 13 20 20 H 1.48499 * 109.47017 * 329.99787 * 17 15 13 21 21 C 1.46895 * 111.44654 * 62.80968 * 8 7 6 22 22 C 1.47072 * 120.88472 * 354.43301 * 5 3 2 23 23 C 1.53171 * 109.61321 * 120.22168 * 2 1 3 24 24 C 1.53087 * 109.16358 * 176.89252 * 23 2 1 25 25 O 1.42907 * 109.41676 * 302.38979 * 24 23 2 26 26 C 1.42906 * 114.09130 * 61.15584 * 25 24 23 27 27 C 1.53087 * 109.41711 * 298.84245 * 26 25 24 28 28 H 1.09000 * 109.46934 * 69.51250 * 1 2 3 29 29 H 1.08997 * 109.47163 * 189.50763 * 1 2 3 30 30 H 1.08992 * 109.47300 * 309.50899 * 1 2 3 31 31 H 1.09000 * 109.62996 * 350.87240 * 6 5 3 32 32 H 1.09000 * 109.62789 * 111.25811 * 6 5 3 33 33 H 1.09005 * 109.49386 * 66.23141 * 7 6 5 34 34 H 1.09000 * 109.48850 * 186.30774 * 7 6 5 35 35 H 1.08998 * 109.46844 * 185.49203 * 9 8 7 36 36 H 1.08997 * 109.47030 * 305.49611 * 9 8 7 37 37 H 0.97002 * 119.99804 * 359.97438 * 12 10 9 38 38 H 0.97006 * 120.00043 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.49552 * 177.01910 * 21 8 7 40 40 H 1.09002 * 109.49053 * 56.94080 * 21 8 7 41 41 H 1.09006 * 109.63212 * 248.54976 * 22 5 3 42 42 H 1.09002 * 109.62995 * 8.93047 * 22 5 3 43 43 H 1.09001 * 109.52285 * 296.79899 * 23 2 1 44 44 H 1.08995 * 109.52595 * 56.98727 * 23 2 1 45 45 H 1.09003 * 109.48845 * 182.40473 * 24 23 2 46 46 H 1.09000 * 109.48294 * 62.37383 * 24 23 2 47 47 H 1.09003 * 109.47320 * 178.86009 * 26 25 24 48 48 H 1.08995 * 109.49251 * 58.83923 * 26 25 24 49 49 H 1.09007 * 109.52054 * 297.70596 * 27 26 25 50 50 H 1.09001 * 109.52289 * 177.52235 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.7146 1.8221 -0.9200 5 7 1.7288 2.2436 1.0223 6 6 2.3081 3.5931 1.1035 7 6 2.9169 3.7829 2.4969 8 7 1.9039 3.4749 3.5160 9 6 2.3942 3.8046 4.8610 10 6 2.5911 5.2945 4.9726 11 8 2.3474 6.0111 4.0249 12 7 3.0388 5.8305 6.1253 13 6 3.2175 7.1860 6.2271 14 1 2.9990 7.8243 5.3837 15 6 3.6786 7.7387 7.4156 16 7 3.8503 9.0379 7.5129 17 14 4.0558 6.6348 8.8745 18 1 5.4751 6.2024 8.8142 19 1 3.8193 7.3828 10.1354 20 1 3.1727 5.4416 8.8337 21 6 1.4760 2.0716 3.4410 22 6 0.8071 1.8168 2.0860 23 6 2.0442 -0.7262 1.2467 24 6 3.5730 -0.7883 1.1975 25 8 3.9834 -1.4477 -0.0021 26 6 3.5714 -0.7877 -1.2008 27 6 2.0425 -0.7256 -1.2479 28 1 -0.3633 0.3597 -0.9627 29 1 -0.3633 -1.0135 0.1697 30 1 -0.3633 0.6537 0.7928 31 1 3.0843 3.7046 0.3464 32 1 1.5281 4.3368 0.9404 33 1 3.7663 3.1104 2.6174 34 1 3.2502 4.8144 2.6107 35 1 1.6660 3.4777 5.6033 36 1 3.3436 3.2985 5.0358 37 1 3.2340 5.2573 6.8831 38 1 4.1718 9.4238 8.3428 39 1 0.7661 1.8645 4.2418 40 1 2.3438 1.4206 3.5463 41 1 -0.1179 2.3898 2.0208 42 1 0.5882 0.7547 1.9765 43 1 1.7302 -0.1849 2.1391 44 1 1.6393 -1.7379 1.2720 45 1 3.9425 -1.3415 2.0610 46 1 3.9786 0.2233 1.2132 47 1 3.9396 -1.3406 -2.0650 48 1 3.9770 0.2239 -1.2167 49 1 1.6375 -1.7374 -1.2730 50 1 1.7272 -0.1838 -2.1396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113433252.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:07 Heat of formation + Delta-G solvation = -106.594892 kcal Electronic energy + Delta-G solvation = -31531.729165 eV Core-core repulsion = 27366.030173 eV Total energy + Delta-G solvation = -4165.698992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.36372 -40.62480 -39.53623 -38.54379 -36.48425 -35.95709 -35.23627 -33.74295 -32.44306 -31.78254 -30.37403 -29.36882 -27.58639 -25.68213 -25.17298 -24.41926 -24.26005 -23.05090 -21.41701 -21.25386 -20.26255 -19.74122 -17.82042 -17.75121 -17.46755 -17.03391 -16.84125 -16.71992 -16.59873 -16.40663 -15.99842 -15.73319 -15.46929 -15.41673 -15.22262 -14.93715 -14.91678 -14.40625 -14.30932 -13.97255 -13.77505 -13.42715 -13.31383 -13.15441 -13.01923 -12.93445 -12.73836 -12.68620 -12.45395 -12.39476 -12.25686 -12.14672 -12.07196 -11.96940 -11.55404 -11.45506 -11.37529 -10.64275 -10.40478 -10.34526 -10.22455 -9.79700 -9.21940 -8.40237 -6.00975 1.30409 1.36352 1.45235 1.51562 1.86025 1.97992 2.23919 2.59592 2.90529 3.15751 3.17776 3.28059 3.50779 3.72975 3.78727 3.92720 3.94072 3.98953 4.07827 4.15484 4.20351 4.25086 4.35017 4.43109 4.47734 4.48887 4.53882 4.55067 4.62003 4.66828 4.70462 4.75350 4.82324 4.84223 4.86530 4.93154 4.97893 5.06044 5.12037 5.17643 5.27621 5.39085 5.53712 5.82691 5.97676 6.13344 6.19576 6.38567 6.61030 6.90232 7.07014 7.41725 7.99393 8.77506 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023462 B = 0.002496 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.147212 B =11214.640503 C =11444.834019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 C 0.517 3.483 4 O -0.581 6.581 5 N -0.606 5.606 6 C 0.127 3.873 7 C 0.052 3.948 8 N -0.533 5.533 9 C 0.056 3.944 10 C 0.450 3.550 11 O -0.606 6.606 12 N -0.592 5.592 13 C -0.326 4.326 14 H 0.054 0.946 15 C -0.017 4.017 16 N -0.937 5.937 17 Si 0.965 3.035 18 H -0.260 1.260 19 H -0.277 1.277 20 H -0.227 1.227 21 C 0.036 3.964 22 C 0.088 3.912 23 C -0.149 4.149 24 C 0.053 3.947 25 O -0.397 6.397 26 C 0.047 3.953 27 C -0.124 4.124 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.389 0.611 38 H 0.278 0.722 39 H 0.121 0.879 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.142 0.858 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.021 0.979 47 H 0.102 0.898 48 H 0.043 0.957 49 H 0.100 0.900 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.450 -29.316 -7.973 31.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.082 4.082 3 C 0.307 3.693 4 O -0.462 6.462 5 N -0.338 5.338 6 C 0.004 3.996 7 C -0.077 4.077 8 N -0.258 5.258 9 C -0.075 4.075 10 C 0.238 3.762 11 O -0.490 6.490 12 N -0.234 5.234 13 C -0.455 4.455 14 H 0.072 0.928 15 C -0.216 4.216 16 N -0.578 5.578 17 Si 0.785 3.215 18 H -0.184 1.184 19 H -0.202 1.202 20 H -0.150 1.150 21 C -0.092 4.092 22 C -0.033 4.033 23 C -0.186 4.186 24 C -0.023 4.023 25 O -0.316 6.316 26 C -0.030 4.030 27 C -0.161 4.161 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.148 0.852 36 H 0.094 0.906 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.159 0.841 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.039 0.961 47 H 0.120 0.880 48 H 0.062 0.938 49 H 0.119 0.881 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.515 -28.321 -9.079 30.676 hybrid contribution 1.243 0.829 0.758 1.676 sum -6.272 -27.492 -8.321 29.400 Atomic orbital electron populations 1.22260 0.89942 1.05340 1.03639 1.20922 0.99097 0.89557 0.98602 1.21249 0.79046 0.88318 0.80706 1.90631 1.41203 1.77757 1.36576 1.48231 1.46373 1.14457 1.24733 1.21413 0.98298 0.83722 0.96177 1.22378 0.92455 1.01565 0.91310 1.61393 1.39849 1.22171 1.02436 1.21837 1.02252 0.90781 0.92591 1.20952 0.81012 0.91598 0.82683 1.90526 1.55177 1.64035 1.39216 1.42041 1.61075 1.06700 1.13625 1.18979 1.43541 0.82766 1.00202 0.92778 1.26130 0.96407 0.97642 1.01375 1.69810 1.46376 1.12738 1.28836 0.85363 0.80068 0.79170 0.76895 1.18446 1.20220 1.14975 1.22752 1.00837 0.86606 0.98967 1.22788 0.92368 1.03446 0.84698 1.22642 0.95861 1.03298 0.96828 1.22698 0.94872 0.96606 0.88162 1.87882 1.77809 1.51509 1.14389 1.22811 0.94960 0.97669 0.87520 1.22012 0.95904 1.01558 0.96671 0.92406 0.88266 0.89811 0.90683 0.91836 0.94966 0.90920 0.85184 0.90601 0.77501 0.91233 0.86146 0.93109 0.89993 0.84089 0.87711 0.87032 0.86673 0.96066 0.88013 0.93842 0.88126 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.11 71.98 0.58 -0.84 16 2 C -0.08 -1.15 0.50 -52.81 -0.03 -1.18 16 3 C 0.52 12.04 5.14 87.66 0.45 12.49 16 4 O -0.58 -18.46 13.37 -3.04 -0.04 -18.50 16 5 N -0.61 -13.42 3.01 -817.94 -2.46 -15.88 16 6 C 0.13 3.70 6.57 86.35 0.57 4.26 16 7 C 0.05 1.59 5.26 86.37 0.45 2.04 16 8 N -0.53 -14.22 4.37 -899.67 -3.93 -18.15 16 9 C 0.06 1.55 5.45 85.56 0.47 2.02 16 10 C 0.45 19.36 7.44 87.66 0.65 20.02 16 11 O -0.61 -32.33 13.89 -3.06 -0.04 -32.37 16 12 N -0.59 -26.99 5.09 -306.99 -1.56 -28.55 16 13 C -0.33 -18.79 10.16 84.04 0.85 -17.94 16 14 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 15 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 16 N -0.94 -56.35 13.96 21.66 0.30 -56.05 16 17 Si 0.97 37.98 27.74 68.60 1.90 39.89 16 18 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 19 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 20 H -0.23 -7.30 6.52 99.48 0.65 -6.65 16 21 C 0.04 0.56 5.37 86.38 0.46 1.02 16 22 C 0.09 1.28 4.13 86.35 0.36 1.63 16 23 C -0.15 -1.60 4.59 30.68 0.14 -1.46 16 24 C 0.05 0.88 6.62 72.01 0.48 1.36 16 25 O -0.40 -8.33 10.77 -148.98 -1.60 -9.94 16 26 C 0.05 0.96 6.55 72.01 0.47 1.43 16 27 C -0.12 -1.96 4.55 30.68 0.14 -1.82 16 28 H 0.06 0.65 8.12 -2.39 -0.02 0.63 16 29 H 0.10 0.41 8.12 -2.39 -0.02 0.39 16 30 H 0.08 0.66 4.64 -2.39 -0.01 0.65 16 31 H 0.07 2.39 7.10 -2.39 -0.02 2.37 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.07 2.90 5.76 -2.39 -0.01 2.88 16 35 H 0.13 2.68 7.97 -2.39 -0.02 2.66 16 36 H 0.08 1.76 8.13 -2.39 -0.02 1.74 16 37 H 0.39 14.48 5.76 -92.71 -0.53 13.95 16 38 H 0.28 15.31 8.31 -92.70 -0.77 14.54 16 39 H 0.12 1.19 7.99 -2.39 -0.02 1.18 16 40 H 0.05 0.69 7.75 -2.39 -0.02 0.67 16 41 H 0.08 1.23 8.11 -2.38 -0.02 1.21 16 42 H 0.14 1.10 2.75 -2.39 -0.01 1.09 16 43 H 0.10 0.80 4.32 -2.39 -0.01 0.79 16 44 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.02 0.46 7.38 -2.39 -0.02 0.44 16 47 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.04 1.17 5.85 -2.39 -0.01 1.15 16 49 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 50 H 0.07 1.27 8.01 -2.39 -0.02 1.25 16 Total: -1.00 -83.20 371.16 -0.54 -83.73 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.38 Total: 33.27 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 6.52 Total: 22.55 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -7.65 Total: -118.63 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -1.69 Total: -60.81 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.90 Total: 39.89 kcal Total: -83.20 -0.54 -83.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113433252.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.861 kcal (2) G-P(sol) polarization free energy of solvation -83.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds