Wall clock time and date at job start Sat Apr 11 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 C 1.46495 * 126.04013 * 179.73793 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.98016 * 5 4 3 7 7 H 1.08002 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47257 * 89.99976 * 10 8 6 12 12 H 1.48501 * 109.46940 * 210.00122 * 10 8 6 13 13 H 1.48499 * 109.47462 * 329.99632 * 10 8 6 14 14 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 15 15 C 1.50694 * 126.12576 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74352 * 359.97438 * 14 4 3 17 17 C 1.50706 * 126.03437 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47116 * 90.00130 * 17 16 14 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00042 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99865 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99741 * 179.97438 * 21 19 18 23 23 C 1.53000 * 109.46986 * 180.02562 * 22 21 19 24 24 O 1.42899 * 109.47178 * 65.00444 * 23 22 21 25 25 C 1.42900 * 114.00010 * 180.02562 * 24 23 22 26 26 C 1.53006 * 109.47085 * 179.97438 * 25 24 23 27 27 O 1.42899 * 109.46781 * 64.99512 * 26 25 24 28 28 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 29 29 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 30 30 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 31 31 H 1.09001 * 109.47188 * 29.97306 * 5 4 3 32 32 H 1.08997 * 109.47530 * 149.97532 * 5 4 3 33 33 H 0.96999 * 120.00262 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47170 * 270.02464 * 15 14 4 35 35 H 1.09004 * 109.47112 * 30.02444 * 15 14 4 36 36 H 1.09003 * 109.46820 * 150.02019 * 15 14 4 37 37 H 1.09000 * 109.46646 * 209.99544 * 17 16 14 38 38 H 1.09000 * 109.47248 * 330.00261 * 17 16 14 39 39 H 1.09000 * 109.47214 * 300.00167 * 18 17 16 40 40 H 1.09008 * 109.47142 * 59.99333 * 18 17 16 41 41 H 0.96998 * 119.99578 * 0.02562 * 21 19 18 42 42 H 1.09000 * 109.47710 * 300.00483 * 22 21 19 43 43 H 1.09000 * 109.46883 * 60.00527 * 22 21 19 44 44 H 1.09001 * 109.47264 * 185.00278 * 23 22 21 45 45 H 1.09002 * 109.47092 * 304.99947 * 23 22 21 46 46 H 1.08994 * 109.47129 * 299.99392 * 25 24 23 47 47 H 1.09000 * 109.47194 * 59.99887 * 25 24 23 48 48 H 1.08992 * 109.46994 * 185.00003 * 26 25 24 49 49 H 1.08997 * 109.46786 * 304.99978 * 26 25 24 50 50 H 0.96704 * 113.99727 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0133 6 6 5.1881 1.7951 -1.4366 7 1 4.6186 1.3779 -2.2540 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1054 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 6.0756 4.1860 -3.9265 12 1 8.2419 3.1711 -3.5293 13 1 6.3958 1.8157 -4.3261 14 6 3.6143 -0.7153 -0.0031 15 6 4.8351 -1.5988 -0.0081 16 6 2.3272 -1.1329 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0470 1.4555 19 6 1.2420 -4.4795 1.4616 20 8 1.0484 -5.0587 0.4137 21 7 1.0398 -5.1174 2.6316 22 6 0.5846 -6.5099 2.6375 23 6 0.4344 -6.9912 4.0820 24 8 -0.6051 -6.2509 4.7251 25 6 -0.8277 -6.6241 6.0864 26 6 -1.9554 -5.7712 6.6712 27 8 -3.1777 -6.0679 5.9930 28 1 -0.3634 0.0038 1.0276 29 1 -0.3633 0.8880 -0.5172 30 1 -0.3633 -0.8919 -0.5105 31 1 4.5588 2.4344 0.4996 32 1 5.6118 0.9994 0.4977 33 1 7.7407 3.6692 -0.8822 34 1 5.1240 -1.8136 -1.0369 35 1 5.6539 -1.0899 0.5006 36 1 4.6103 -2.5319 0.5087 37 1 0.8985 -2.6365 -0.4975 38 1 2.5908 -3.1883 -0.5052 39 1 2.6712 -2.9761 1.9640 40 1 0.9790 -2.4243 1.9718 41 1 1.1950 -4.6543 3.4696 42 1 -0.3774 -6.5799 2.1296 43 1 1.3145 -7.1329 2.1206 44 1 0.1820 -8.0515 4.0873 45 1 1.3726 -6.8384 4.6153 46 1 -1.1061 -7.6769 6.1336 47 1 0.0844 -6.4633 6.6610 48 1 -2.0656 -5.9930 7.7326 49 1 -1.7160 -4.7155 6.5435 50 1 -3.9377 -5.5627 6.3130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115836394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:10 Heat of formation + Delta-G solvation = -84.176023 kcal Electronic energy + Delta-G solvation = -28802.425648 eV Core-core repulsion = 24637.698810 eV Total energy + Delta-G solvation = -4164.726837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.58788 -39.71780 -38.66382 -36.92376 -34.88912 -34.32562 -33.33050 -32.46156 -31.02891 -30.15751 -28.98183 -28.78262 -26.62716 -25.84685 -24.03757 -22.98340 -22.72270 -22.00716 -20.40054 -18.76795 -18.60117 -18.14749 -17.44635 -17.08013 -16.68057 -16.54764 -15.71460 -15.63681 -15.35509 -14.92895 -14.80507 -14.44267 -14.28064 -13.87757 -13.68765 -13.42847 -13.09218 -12.97752 -12.83897 -12.58576 -12.47012 -12.32023 -12.23633 -12.07968 -11.79756 -11.75971 -11.61006 -11.51657 -11.30805 -11.21511 -10.95122 -10.78534 -10.66833 -10.54806 -10.24663 -10.16526 -9.82214 -9.70681 -9.56313 -9.19044 -8.63791 -8.14852 -7.43752 -6.25507 -4.32623 2.69134 2.78607 3.03699 3.15478 3.22318 3.28413 3.33047 3.45858 3.64877 3.74609 4.30622 4.41684 4.59061 4.67140 4.70252 4.86002 4.89360 4.93933 4.99491 5.08324 5.23506 5.25100 5.32680 5.34849 5.38578 5.46109 5.57089 5.69254 5.82129 5.87968 5.98716 6.02882 6.05869 6.10625 6.26950 6.28755 6.40121 6.51640 6.59073 6.66948 6.89290 7.04906 7.14517 7.15672 7.41673 7.55089 7.67641 7.89739 8.08536 8.22754 8.69302 8.77659 9.33747 10.82056 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019263 B = 0.001833 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.209882 B =15272.104254 C =15565.532408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.051 3.949 3 N -0.298 5.298 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.093 3.907 15 C -0.086 4.086 16 C -0.268 4.268 17 C -0.011 4.011 18 C -0.133 4.133 19 C 0.513 3.487 20 O -0.542 6.542 21 N -0.732 5.732 22 C 0.123 3.877 23 C 0.049 3.951 24 O -0.377 6.377 25 C 0.061 3.939 26 C 0.077 3.923 27 O -0.567 6.567 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.268 0.732 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.402 0.598 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.056 0.944 50 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.443 -20.261 16.214 29.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.122 5.122 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.039 4.039 15 C -0.144 4.144 16 C -0.280 4.280 17 C -0.050 4.050 18 C -0.173 4.173 19 C 0.301 3.699 20 O -0.419 6.419 21 N -0.385 5.385 22 C -0.001 4.001 23 C -0.028 4.028 24 O -0.296 6.296 25 C -0.016 4.016 26 C -0.001 4.001 27 O -0.372 6.372 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.236 0.764 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -12.952 -19.432 15.079 27.798 hybrid contribution 0.353 -0.077 0.097 0.374 sum -12.599 -19.509 15.177 27.743 Atomic orbital electron populations 1.20028 0.88052 1.02426 1.01821 1.21945 0.96113 0.90772 1.02517 1.77270 0.87491 1.22674 1.24732 1.49231 1.05765 1.04196 1.51296 1.19643 0.78007 0.89536 0.98894 1.21314 1.13001 1.31631 0.91360 0.91798 1.24929 0.95702 0.95032 0.98155 1.69917 1.18997 1.32972 1.31153 0.86352 0.77582 0.78990 0.83758 1.20313 1.20888 1.19656 1.20774 0.96124 0.85673 1.01294 1.20345 0.93740 0.97135 1.03162 1.19363 0.91333 0.95137 1.22190 1.19391 1.01598 0.90815 0.93155 1.21735 1.02952 0.91286 1.01304 1.21047 0.76506 0.89263 0.83110 1.90693 1.51172 1.68425 1.31578 1.45998 1.69806 1.13549 1.09175 1.21317 1.00996 0.83227 0.94595 1.22791 0.90750 0.96052 0.93215 1.88014 1.55455 1.61461 1.24651 1.22557 0.96709 0.98904 0.83420 1.22188 0.84426 0.98939 0.94552 1.86559 1.18536 1.68207 1.63924 0.91605 0.91603 0.91202 0.93102 0.93119 0.92286 0.90468 0.90980 0.91095 0.91270 0.91427 0.89144 0.88994 0.76351 0.90627 0.90018 0.91662 0.92541 0.92536 0.91777 0.92155 0.92563 0.77292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.26 36.01 0.37 -0.58 16 2 C 0.05 0.98 7.22 -82.40 -0.59 0.39 16 3 N -0.30 -6.94 12.58 33.67 0.42 -6.51 16 4 N -0.33 -7.67 3.60 -58.32 -0.21 -7.88 16 5 C 0.26 6.64 6.00 -5.20 -0.03 6.61 16 6 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 7 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 10 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.09 1.86 6.93 -82.26 -0.57 1.29 16 15 C -0.09 -1.42 9.72 36.00 0.35 -1.07 16 16 C -0.27 -4.88 5.35 -105.05 -0.56 -5.44 16 17 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 18 C -0.13 -1.58 5.68 -27.89 -0.16 -1.74 16 19 C 0.51 6.37 7.83 -10.98 -0.09 6.29 16 20 O -0.54 -8.76 15.98 5.56 0.09 -8.67 16 21 N -0.73 -6.88 5.50 -60.30 -0.33 -7.21 16 22 C 0.12 1.04 6.06 -4.04 -0.02 1.02 16 23 C 0.05 0.31 6.07 37.16 0.23 0.53 16 24 O -0.38 -3.15 10.25 -40.09 -0.41 -3.56 16 25 C 0.06 0.36 6.32 37.16 0.23 0.59 16 26 C 0.08 0.41 7.43 37.16 0.28 0.69 16 27 O -0.57 -4.17 13.62 -40.09 -0.55 -4.72 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.91 7.25 -51.93 -0.38 0.53 16 31 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.05 1.29 7.05 -51.93 -0.37 0.93 16 33 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.22 7.08 -51.93 -0.37 0.85 16 36 H 0.07 0.95 7.77 -51.93 -0.40 0.54 16 37 H 0.07 1.05 7.20 -51.93 -0.37 0.67 16 38 H 0.07 1.04 7.73 -51.93 -0.40 0.63 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 41 H 0.40 2.96 8.47 -40.82 -0.35 2.62 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 49 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.38 1.08 9.12 45.56 0.42 1.49 16 LS Contribution 421.59 15.07 6.35 6.35 Total: -1.00 -35.96 421.59 -7.72 -43.67 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.68 Total: 1.93 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.11 Total: -5.23 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.62 Total: -46.12 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.87 Total: -16.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.96 -7.72 -43.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115836394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.502 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds