Wall clock time and date at job start Sat Apr 11 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 C 1.46495 * 126.04013 * 179.73793 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.98016 * 5 4 3 7 7 H 1.08002 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47257 * 89.99976 * 10 8 6 12 12 H 1.48501 * 109.46940 * 210.00122 * 10 8 6 13 13 H 1.48499 * 109.47462 * 329.99632 * 10 8 6 14 14 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 15 15 C 1.50694 * 126.12576 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74352 * 359.97438 * 14 4 3 17 17 C 1.50706 * 126.03437 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47116 * 90.00130 * 17 16 14 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00042 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99865 * 179.97438 * 19 18 17 22 22 C 1.46496 * 119.99741 * 179.97438 * 21 19 18 23 23 C 1.53000 * 109.46986 * 180.02562 * 22 21 19 24 24 O 1.42899 * 109.47178 * 65.00444 * 23 22 21 25 25 C 1.42900 * 114.00010 * 180.02562 * 24 23 22 26 26 C 1.53006 * 109.47085 * 179.97438 * 25 24 23 27 27 O 1.42899 * 109.46781 * 64.99512 * 26 25 24 28 28 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 29 29 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 30 30 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 31 31 H 1.09001 * 109.47188 * 29.97306 * 5 4 3 32 32 H 1.08997 * 109.47530 * 149.97532 * 5 4 3 33 33 H 0.96999 * 120.00262 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47170 * 270.02464 * 15 14 4 35 35 H 1.09004 * 109.47112 * 30.02444 * 15 14 4 36 36 H 1.09003 * 109.46820 * 150.02019 * 15 14 4 37 37 H 1.09000 * 109.46646 * 209.99544 * 17 16 14 38 38 H 1.09000 * 109.47248 * 330.00261 * 17 16 14 39 39 H 1.09000 * 109.47214 * 300.00167 * 18 17 16 40 40 H 1.09008 * 109.47142 * 59.99333 * 18 17 16 41 41 H 0.96998 * 119.99578 * 0.02562 * 21 19 18 42 42 H 1.09000 * 109.47710 * 300.00483 * 22 21 19 43 43 H 1.09000 * 109.46883 * 60.00527 * 22 21 19 44 44 H 1.09001 * 109.47264 * 185.00278 * 23 22 21 45 45 H 1.09002 * 109.47092 * 304.99947 * 23 22 21 46 46 H 1.08994 * 109.47129 * 299.99392 * 25 24 23 47 47 H 1.09000 * 109.47194 * 59.99887 * 25 24 23 48 48 H 1.08992 * 109.46994 * 185.00003 * 26 25 24 49 49 H 1.08997 * 109.46786 * 304.99978 * 26 25 24 50 50 H 0.96704 * 113.99727 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0133 6 6 5.1881 1.7951 -1.4366 7 1 4.6186 1.3779 -2.2540 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1054 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 6.0756 4.1860 -3.9265 12 1 8.2419 3.1711 -3.5293 13 1 6.3958 1.8157 -4.3261 14 6 3.6143 -0.7153 -0.0031 15 6 4.8351 -1.5988 -0.0081 16 6 2.3272 -1.1329 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0470 1.4555 19 6 1.2420 -4.4795 1.4616 20 8 1.0484 -5.0587 0.4137 21 7 1.0398 -5.1174 2.6316 22 6 0.5846 -6.5099 2.6375 23 6 0.4344 -6.9912 4.0820 24 8 -0.6051 -6.2509 4.7251 25 6 -0.8277 -6.6241 6.0864 26 6 -1.9554 -5.7712 6.6712 27 8 -3.1777 -6.0679 5.9930 28 1 -0.3634 0.0038 1.0276 29 1 -0.3633 0.8880 -0.5172 30 1 -0.3633 -0.8919 -0.5105 31 1 4.5588 2.4344 0.4996 32 1 5.6118 0.9994 0.4977 33 1 7.7407 3.6692 -0.8822 34 1 5.1240 -1.8136 -1.0369 35 1 5.6539 -1.0899 0.5006 36 1 4.6103 -2.5319 0.5087 37 1 0.8985 -2.6365 -0.4975 38 1 2.5908 -3.1883 -0.5052 39 1 2.6712 -2.9761 1.9640 40 1 0.9790 -2.4243 1.9718 41 1 1.1950 -4.6543 3.4696 42 1 -0.3774 -6.5799 2.1296 43 1 1.3145 -7.1329 2.1206 44 1 0.1820 -8.0515 4.0873 45 1 1.3726 -6.8384 4.6153 46 1 -1.1061 -7.6769 6.1336 47 1 0.0844 -6.4633 6.6610 48 1 -2.0656 -5.9930 7.7326 49 1 -1.7160 -4.7155 6.5435 50 1 -3.9377 -5.5627 6.3130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115836394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:09 Heat of formation + Delta-G solvation = -111.839582 kcal Electronic energy + Delta-G solvation = -28803.625230 eV Core-core repulsion = 24637.698810 eV Total energy + Delta-G solvation = -4165.926419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14268 -40.66073 -39.20244 -37.41410 -36.11509 -35.63424 -34.82607 -34.18513 -32.01297 -31.18330 -30.48369 -29.48821 -27.92828 -27.60535 -25.39445 -24.06035 -23.37498 -23.09630 -21.34946 -20.29924 -20.12576 -18.82098 -18.58359 -18.07150 -17.89283 -17.25809 -17.22498 -16.54521 -16.29478 -16.12304 -15.98062 -15.47484 -15.33905 -14.86331 -14.82511 -14.56088 -14.34935 -14.12573 -13.99384 -13.93418 -13.67995 -13.47612 -13.32505 -13.20052 -13.16560 -12.90223 -12.84260 -12.74201 -12.62310 -12.57342 -12.35255 -12.22091 -11.94641 -11.84047 -11.70471 -11.14990 -10.95433 -10.85825 -10.75513 -10.56071 -10.03059 -9.82803 -9.01427 -8.34976 -6.52562 1.18265 1.35354 1.36696 1.47868 1.73895 1.89652 1.95617 2.32934 2.35336 2.68059 2.94401 3.44336 3.81485 3.90891 3.94623 4.01460 4.18512 4.24682 4.25106 4.29679 4.30522 4.38086 4.49264 4.53429 4.59124 4.61311 4.66064 4.73598 4.73744 4.80862 4.85607 4.87171 4.88376 4.91257 4.94230 4.98659 5.05282 5.14606 5.32561 5.46158 5.50462 5.52286 5.57374 5.80438 6.06231 6.23223 6.32699 6.61900 6.62706 6.91480 7.12406 7.18700 7.34061 8.70977 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019263 B = 0.001833 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.209882 B =15272.104254 C =15565.532408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.350 5.350 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.971 3.029 11 H -0.275 1.275 12 H -0.269 1.269 13 H -0.270 1.270 14 C 0.078 3.922 15 C -0.082 4.082 16 C -0.258 4.258 17 C -0.004 4.004 18 C -0.124 4.124 19 C 0.515 3.485 20 O -0.584 6.584 21 N -0.717 5.717 22 C 0.121 3.879 23 C 0.054 3.946 24 O -0.404 6.404 25 C 0.053 3.947 26 C 0.071 3.929 27 O -0.596 6.596 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.019 0.981 32 H 0.048 0.952 33 H 0.274 0.726 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.414 0.586 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.054 0.946 50 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.817 -21.910 17.076 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.174 5.174 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.065 0.935 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.794 3.206 11 H -0.200 1.200 12 H -0.193 1.193 13 H -0.195 1.195 14 C -0.052 4.052 15 C -0.140 4.140 16 C -0.269 4.269 17 C -0.043 4.043 18 C -0.164 4.164 19 C 0.303 3.697 20 O -0.464 6.464 21 N -0.370 5.370 22 C -0.003 4.003 23 C -0.023 4.023 24 O -0.324 6.324 25 C -0.023 4.023 26 C -0.006 4.006 27 O -0.404 6.404 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.251 0.749 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.106 0.894 48 H 0.103 0.897 49 H 0.073 0.927 50 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -13.341 -21.096 16.002 29.649 hybrid contribution 0.356 0.374 -0.093 0.525 sum -12.985 -20.722 15.909 29.174 Atomic orbital electron populations 1.20205 0.84793 1.03403 1.03737 1.22769 0.98089 0.90243 0.99997 1.77207 0.87823 1.24974 1.27389 1.48998 1.05314 1.05158 1.54036 1.19130 0.79054 0.88747 0.97503 1.21432 1.13443 1.32393 0.91842 0.93537 1.25739 0.95401 0.94468 1.02296 1.69996 1.19331 1.33165 1.33092 0.85365 0.77884 0.78633 0.78670 1.20037 1.19312 1.19503 1.21463 0.98185 0.84694 1.00811 1.20442 0.92216 0.97924 1.03460 1.19718 0.90385 0.96503 1.20324 1.19358 1.01241 0.88404 0.95311 1.21616 1.04258 0.91173 0.99353 1.21048 0.76110 0.89294 0.83203 1.90684 1.53329 1.69301 1.33135 1.45901 1.68306 1.13924 1.08887 1.21383 0.99970 0.82692 0.96271 1.22793 0.91372 0.96376 0.91721 1.87971 1.56187 1.62149 1.26063 1.22780 0.97953 0.98946 0.82606 1.22368 0.83686 0.98827 0.95730 1.86507 1.19873 1.69059 1.64996 0.89105 0.91668 0.89156 0.96279 0.93425 0.91725 0.90632 0.91778 0.87457 0.91308 0.91747 0.87614 0.87630 0.74918 0.92709 0.89618 0.90406 0.90447 0.92657 0.89446 0.89699 0.92727 0.75503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.26 71.24 0.73 -1.00 16 2 C 0.05 2.05 7.22 43.10 0.31 2.36 16 3 N -0.35 -16.67 12.58 -47.38 -0.60 -17.26 16 4 N -0.35 -17.23 3.60 -338.42 -1.22 -18.45 16 5 C 0.27 14.85 6.00 85.63 0.51 15.37 16 6 C -0.55 -31.79 9.39 25.60 0.24 -31.54 16 7 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 8 C 0.02 1.22 5.46 84.66 0.46 1.68 16 9 N -0.92 -52.61 13.29 21.45 0.28 -52.33 16 10 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 C 0.08 3.14 6.93 41.40 0.29 3.42 16 15 C -0.08 -2.68 9.72 71.23 0.69 -1.98 16 16 C -0.26 -9.11 5.35 -20.14 -0.11 -9.21 16 17 C 0.00 -0.12 4.41 29.85 0.13 0.02 16 18 C -0.12 -2.63 5.68 29.85 0.17 -2.46 16 19 C 0.52 11.78 7.83 87.65 0.69 12.46 16 20 O -0.58 -18.22 15.98 -3.03 -0.05 -18.27 16 21 N -0.72 -11.92 5.50 -463.06 -2.55 -14.47 16 22 C 0.12 1.87 6.06 86.38 0.52 2.39 16 23 C 0.05 0.56 6.07 71.98 0.44 0.99 16 24 O -0.40 -5.99 10.25 -144.33 -1.48 -7.47 16 25 C 0.05 0.51 6.32 71.98 0.45 0.96 16 26 C 0.07 0.64 7.43 71.98 0.53 1.17 16 27 O -0.60 -8.14 13.62 -144.33 -1.97 -10.11 16 28 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.09 2.12 7.25 -2.39 -0.02 2.10 16 31 H 0.02 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.05 2.54 7.05 -2.39 -0.02 2.52 16 33 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.08 2.47 8.14 -2.39 -0.02 2.46 16 35 H 0.06 2.17 7.08 -2.39 -0.02 2.15 16 36 H 0.11 2.63 7.77 -2.39 -0.02 2.61 16 37 H 0.07 1.94 7.20 -2.39 -0.02 1.93 16 38 H 0.06 1.86 7.73 -2.39 -0.02 1.84 16 39 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.41 4.93 8.47 -92.71 -0.79 4.15 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.40 1.89 9.12 -74.05 -0.68 1.22 16 Total: -1.00 -80.02 421.59 0.01 -80.00 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.51 Total: 17.70 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 6.07 Total: -5.36 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -4.08 Total: -102.50 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -3.49 Total: -35.85 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -80.02 0.01 -80.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115836394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.836 kcal (2) G-P(sol) polarization free energy of solvation -80.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds