Wall clock time and date at job start Sat Apr 11 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47391 * 2 1 4 4 O 1.42901 * 110.88671 * 303.88228 * 3 2 1 5 5 C 1.55158 * 111.00634 * 179.97438 * 3 2 1 6 6 C 1.54324 * 102.94311 * 206.42616 * 5 3 2 7 7 N 1.47019 * 107.27281 * 22.19254 * 6 5 3 8 8 C 1.34776 * 125.65159 * 181.02756 * 7 6 5 9 9 O 1.21348 * 119.99866 * 180.02562 * 8 7 6 10 10 C 1.49453 * 119.99566 * 0.29245 * 8 7 6 11 11 O 1.21351 * 120.00058 * 359.73582 * 10 8 7 12 12 N 1.34772 * 119.99730 * 179.72464 * 10 8 7 13 13 C 1.46495 * 120.00039 * 180.02562 * 12 10 8 14 14 C 1.53049 * 109.46160 * 275.07414 * 13 12 10 15 15 C 1.53196 * 109.30988 * 178.61446 * 14 13 12 16 16 N 1.46923 * 108.77958 * 54.63395 * 15 14 13 17 17 C 1.36936 * 120.63100 * 126.36256 * 16 15 14 18 18 H 1.08001 * 120.00006 * 331.85267 * 17 16 15 19 19 C 1.38811 * 119.99549 * 151.84660 * 17 16 15 20 20 N 1.31618 * 120.00278 * 343.07440 * 19 17 16 21 21 Si 1.86805 * 119.99671 * 163.07761 * 19 17 16 22 22 H 1.48508 * 109.47235 * 89.99921 * 21 19 17 23 23 H 1.48506 * 109.47041 * 209.99643 * 21 19 17 24 24 H 1.48500 * 109.47304 * 330.00007 * 21 19 17 25 25 C 1.46928 * 118.73737 * 306.39251 * 16 15 14 26 26 C 1.53039 * 109.46408 * 155.00215 * 13 12 10 27 27 C 1.47429 * 108.70125 * 1.28806 * 7 6 5 28 28 H 1.09004 * 109.47142 * 300.00225 * 1 2 3 29 29 H 1.09005 * 109.46581 * 59.99523 * 1 2 3 30 30 H 1.08990 * 109.47131 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47354 * 240.00091 * 2 1 3 32 32 H 1.08996 * 109.47251 * 120.00045 * 2 1 3 33 33 H 0.96704 * 114.00242 * 56.11534 * 4 3 2 34 34 H 1.09000 * 110.71995 * 88.05731 * 5 3 2 35 35 H 1.09002 * 110.87058 * 324.86290 * 5 3 2 36 36 H 1.09010 * 109.87980 * 262.77467 * 6 5 3 37 37 H 1.09000 * 110.00953 * 141.68477 * 6 5 3 38 38 H 0.97006 * 120.00355 * 0.02562 * 12 10 8 39 39 H 1.09001 * 109.46102 * 35.03402 * 13 12 10 40 40 H 1.08998 * 109.49186 * 298.56411 * 14 13 12 41 41 H 1.09000 * 109.49674 * 58.65919 * 14 13 12 42 42 H 1.08995 * 109.58583 * 294.84468 * 15 14 13 43 43 H 1.09004 * 109.69753 * 174.49041 * 15 14 13 44 44 H 0.97003 * 119.99768 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.58149 * 293.81644 * 25 16 15 46 46 H 1.09000 * 109.58310 * 173.39434 * 25 16 15 47 47 H 1.09001 * 109.49823 * 301.33928 * 26 13 12 48 48 H 1.09008 * 109.49699 * 61.43340 * 26 13 12 49 49 H 1.08997 * 110.36765 * 94.48025 * 27 7 6 50 50 H 1.09000 * 110.36328 * 216.80659 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5082 2.1710 -1.1084 5 6 3.5911 1.4840 0.0006 6 6 3.9003 2.8397 0.6699 7 7 2.7205 3.2142 1.4632 8 6 2.5856 4.3443 2.1851 9 8 1.5626 4.5501 2.8044 10 6 3.6937 5.3466 2.2179 11 8 4.7166 5.1408 1.5984 12 7 3.5566 6.4793 2.9352 13 6 4.6425 7.4621 2.9670 14 6 5.6526 7.0713 4.0484 15 6 6.8039 8.0819 4.0552 16 7 6.2467 9.4326 4.2098 17 6 6.6922 10.2614 5.2046 18 1 7.0804 9.8440 6.1219 19 6 6.6449 11.6382 5.0340 20 7 6.4960 12.1473 3.8294 21 14 6.7926 12.7684 6.5140 22 1 8.2225 13.0958 6.7461 23 1 6.0335 14.0191 6.2595 24 1 6.2395 12.0888 7.7130 25 6 5.2020 9.8768 3.2771 26 6 4.0686 8.8462 3.2788 27 6 1.7117 2.1457 1.3432 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.5420 2.1733 -1.1504 34 1 3.9779 1.4596 -1.0181 35 1 4.0013 0.6619 0.5871 36 1 4.0892 3.5952 -0.0929 37 1 4.7696 2.7448 1.3206 38 1 2.7390 6.6438 3.4306 39 1 5.1397 7.4854 1.9973 40 1 5.1619 7.0721 5.0217 41 1 6.0435 6.0757 3.8382 42 1 7.3517 8.0180 3.1151 43 1 7.4766 7.8669 4.8855 44 1 6.4634 13.1095 3.7102 45 1 5.6193 9.9593 2.2735 46 1 4.8158 10.8452 3.5953 47 1 3.3323 9.1139 2.5211 48 1 3.5929 8.8303 4.2595 49 1 1.8013 1.4446 2.1729 50 1 0.7092 2.5724 1.3124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117281020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:13 Heat of formation + Delta-G solvation = -95.721664 kcal Electronic energy + Delta-G solvation = -30318.175433 eV Core-core repulsion = 26152.947939 eV Total energy + Delta-G solvation = -4165.227494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.98949 -39.68452 -38.35257 -37.30602 -35.97771 -34.46279 -33.31792 -32.13711 -31.02756 -30.19334 -29.50862 -28.73703 -26.12452 -25.00662 -23.44501 -22.60155 -22.26286 -21.42602 -20.73591 -20.03736 -19.22500 -17.91872 -17.50021 -16.90041 -16.66236 -16.37831 -15.76095 -15.62667 -14.95848 -14.76526 -14.52110 -14.35201 -14.16150 -13.89222 -13.67028 -13.53130 -13.29460 -13.13797 -13.00307 -12.85549 -12.59788 -12.42126 -12.31149 -12.21607 -11.81433 -11.65646 -11.50529 -11.46436 -11.13596 -10.94682 -10.86164 -10.71472 -10.52292 -10.48254 -10.31319 -10.06925 -9.84142 -9.67332 -9.38574 -9.00794 -8.80844 -8.47196 -6.69803 -5.80543 -3.22716 1.45393 2.22147 3.24315 3.37064 3.42828 3.44551 3.46960 3.61972 3.92831 4.11448 4.20977 4.46226 4.49069 4.59189 4.74781 4.85925 4.90600 5.11928 5.19321 5.26601 5.29538 5.38083 5.39794 5.43814 5.46771 5.50151 5.53112 5.60175 5.67442 5.76112 5.81437 5.91130 6.03919 6.18345 6.27615 6.48103 6.49964 6.55296 6.73609 6.78575 6.94839 6.97815 7.16198 7.29916 7.32891 7.60225 7.72491 7.79105 8.10395 8.43605 9.19587 9.82740 10.39518 11.28495 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035880 B = 0.002022 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.182827 B =13842.563054 C =14014.309667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.140 4.140 3 C 0.117 3.883 4 O -0.544 6.544 5 C -0.122 4.122 6 C 0.111 3.889 7 N -0.589 5.589 8 C 0.522 3.478 9 O -0.526 6.526 10 C 0.506 3.494 11 O -0.519 6.519 12 N -0.690 5.690 13 C 0.149 3.851 14 C -0.140 4.140 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.175 3.825 26 C -0.148 4.148 27 C 0.082 3.918 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.377 0.623 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.408 0.592 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.021 0.979 43 H 0.057 0.943 44 H 0.254 0.746 45 H 0.022 0.978 46 H 0.093 0.907 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.081 0.919 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.584 -24.869 -8.427 28.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.178 4.178 3 C 0.075 3.925 4 O -0.351 6.351 5 C -0.160 4.160 6 C -0.012 4.012 7 N -0.323 5.323 8 C 0.305 3.695 9 O -0.402 6.402 10 C 0.285 3.715 11 O -0.395 6.395 12 N -0.342 5.342 13 C 0.047 3.953 14 C -0.180 4.180 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.048 3.952 26 C -0.188 4.188 27 C -0.041 4.041 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.243 0.757 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.040 0.960 46 H 0.111 0.889 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.747 -24.509 -8.646 28.124 hybrid contribution -0.964 0.566 1.076 1.551 sum -11.711 -23.943 -7.570 27.708 Atomic orbital electron populations 1.21848 0.95226 1.02755 1.02139 1.22047 0.96774 0.95341 1.03688 1.22361 0.94535 0.90389 0.85184 1.86579 1.26017 1.75360 1.47103 1.22801 0.92739 0.97587 1.02890 1.22178 0.87561 0.96179 0.95239 1.48111 1.18525 1.18518 1.47149 1.20124 0.88019 0.81754 0.79588 1.90748 1.29785 1.76441 1.43229 1.19854 0.87337 0.83257 0.81011 1.90745 1.29249 1.76440 1.43046 1.46206 1.20921 1.18832 1.48213 1.21233 0.86641 0.87081 1.00381 1.22404 0.98068 0.99369 0.98165 1.20866 0.92673 0.85473 0.98856 1.44094 1.40881 1.11268 1.35283 1.19168 1.38020 0.87227 0.93788 0.91650 1.25059 1.01000 0.97422 0.96190 1.70021 1.53832 1.11272 1.19601 0.86302 0.77683 0.80312 0.82494 1.21383 1.21557 1.20492 1.20757 0.86091 0.95579 0.92762 1.22573 1.00745 0.94505 1.00958 1.23073 0.93460 0.89590 0.97951 0.92180 0.92318 0.91810 0.90353 0.90369 0.77381 0.88713 0.89010 0.89795 0.90065 0.75695 0.89572 0.92071 0.92659 0.96092 0.92414 0.93574 0.95970 0.88877 0.92491 0.91889 0.90066 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 9.41 37.16 0.35 -0.25 16 2 C -0.14 -0.61 5.25 -26.73 -0.14 -0.75 16 3 C 0.12 0.79 1.00 -88.35 -0.09 0.70 16 4 O -0.54 -4.38 13.17 -35.23 -0.46 -4.84 16 5 C -0.12 -0.86 6.15 -24.90 -0.15 -1.01 16 6 C 0.11 1.14 5.49 -3.07 -0.02 1.13 16 7 N -0.59 -6.90 3.32 -170.88 -0.57 -7.47 16 8 C 0.52 7.53 7.91 -11.58 -0.09 7.43 16 9 O -0.53 -8.40 16.73 5.50 0.09 -8.31 16 10 C 0.51 7.90 7.82 -11.59 -0.09 7.81 16 11 O -0.52 -8.86 13.78 5.50 0.08 -8.79 16 12 N -0.69 -10.67 5.07 -54.19 -0.27 -10.94 16 13 C 0.15 2.62 2.41 -67.89 -0.16 2.45 16 14 C -0.14 -2.54 5.65 -26.60 -0.15 -2.69 16 15 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 16 N -0.59 -14.72 2.99 -172.32 -0.52 -15.24 16 17 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 20 N -0.90 -25.98 11.20 55.49 0.62 -25.36 16 21 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 26 C -0.15 -2.75 5.55 -26.61 -0.15 -2.89 16 27 C 0.08 0.71 5.38 -2.41 -0.01 0.69 16 28 H 0.06 0.23 7.51 -51.93 -0.39 -0.16 16 29 H 0.06 0.19 6.75 -51.93 -0.35 -0.17 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 33 H 0.38 1.87 7.24 45.56 0.33 2.20 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.46 8.04 -51.93 -0.42 0.05 16 36 H 0.08 1.01 7.57 -51.92 -0.39 0.62 16 37 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 38 H 0.41 5.81 8.07 -40.82 -0.33 5.48 16 39 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 49 H 0.08 0.60 7.99 -51.93 -0.41 0.19 16 50 H 0.08 0.75 7.97 -51.93 -0.41 0.34 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -32.44 393.48 -8.79 -41.23 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.67 Total: 4.50 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -0.98 Total: 12.76 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.74 Total: -59.01 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.30 Total: -21.94 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.44 -8.79 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117281020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.495 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds