Wall clock time and date at job start Sat Apr 11 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47391 * 2 1 4 4 O 1.42901 * 110.88671 * 303.88228 * 3 2 1 5 5 C 1.55158 * 111.00634 * 179.97438 * 3 2 1 6 6 C 1.54324 * 102.94311 * 206.42616 * 5 3 2 7 7 N 1.47019 * 107.27281 * 22.19254 * 6 5 3 8 8 C 1.34776 * 125.65159 * 181.02756 * 7 6 5 9 9 O 1.21348 * 119.99866 * 180.02562 * 8 7 6 10 10 C 1.49453 * 119.99566 * 0.29245 * 8 7 6 11 11 O 1.21351 * 120.00058 * 359.73582 * 10 8 7 12 12 N 1.34772 * 119.99730 * 179.72464 * 10 8 7 13 13 C 1.46495 * 120.00039 * 180.02562 * 12 10 8 14 14 C 1.53049 * 109.46160 * 275.07414 * 13 12 10 15 15 C 1.53196 * 109.30988 * 178.61446 * 14 13 12 16 16 N 1.46923 * 108.77958 * 54.63395 * 15 14 13 17 17 C 1.36936 * 120.63100 * 126.36256 * 16 15 14 18 18 H 1.08001 * 120.00006 * 331.85267 * 17 16 15 19 19 C 1.38811 * 119.99549 * 151.84660 * 17 16 15 20 20 N 1.31618 * 120.00278 * 343.07440 * 19 17 16 21 21 Si 1.86805 * 119.99671 * 163.07761 * 19 17 16 22 22 H 1.48508 * 109.47235 * 89.99921 * 21 19 17 23 23 H 1.48506 * 109.47041 * 209.99643 * 21 19 17 24 24 H 1.48500 * 109.47304 * 330.00007 * 21 19 17 25 25 C 1.46928 * 118.73737 * 306.39251 * 16 15 14 26 26 C 1.53039 * 109.46408 * 155.00215 * 13 12 10 27 27 C 1.47429 * 108.70125 * 1.28806 * 7 6 5 28 28 H 1.09004 * 109.47142 * 300.00225 * 1 2 3 29 29 H 1.09005 * 109.46581 * 59.99523 * 1 2 3 30 30 H 1.08990 * 109.47131 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47354 * 240.00091 * 2 1 3 32 32 H 1.08996 * 109.47251 * 120.00045 * 2 1 3 33 33 H 0.96704 * 114.00242 * 56.11534 * 4 3 2 34 34 H 1.09000 * 110.71995 * 88.05731 * 5 3 2 35 35 H 1.09002 * 110.87058 * 324.86290 * 5 3 2 36 36 H 1.09010 * 109.87980 * 262.77467 * 6 5 3 37 37 H 1.09000 * 110.00953 * 141.68477 * 6 5 3 38 38 H 0.97006 * 120.00355 * 0.02562 * 12 10 8 39 39 H 1.09001 * 109.46102 * 35.03402 * 13 12 10 40 40 H 1.08998 * 109.49186 * 298.56411 * 14 13 12 41 41 H 1.09000 * 109.49674 * 58.65919 * 14 13 12 42 42 H 1.08995 * 109.58583 * 294.84468 * 15 14 13 43 43 H 1.09004 * 109.69753 * 174.49041 * 15 14 13 44 44 H 0.97003 * 119.99768 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.58149 * 293.81644 * 25 16 15 46 46 H 1.09000 * 109.58310 * 173.39434 * 25 16 15 47 47 H 1.09001 * 109.49823 * 301.33928 * 26 13 12 48 48 H 1.09008 * 109.49699 * 61.43340 * 26 13 12 49 49 H 1.08997 * 110.36765 * 94.48025 * 27 7 6 50 50 H 1.09000 * 110.36328 * 216.80659 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5082 2.1710 -1.1084 5 6 3.5911 1.4840 0.0006 6 6 3.9003 2.8397 0.6699 7 7 2.7205 3.2142 1.4632 8 6 2.5856 4.3443 2.1851 9 8 1.5626 4.5501 2.8044 10 6 3.6937 5.3466 2.2179 11 8 4.7166 5.1408 1.5984 12 7 3.5566 6.4793 2.9352 13 6 4.6425 7.4621 2.9670 14 6 5.6526 7.0713 4.0484 15 6 6.8039 8.0819 4.0552 16 7 6.2467 9.4326 4.2098 17 6 6.6922 10.2614 5.2046 18 1 7.0804 9.8440 6.1219 19 6 6.6449 11.6382 5.0340 20 7 6.4960 12.1473 3.8294 21 14 6.7926 12.7684 6.5140 22 1 8.2225 13.0958 6.7461 23 1 6.0335 14.0191 6.2595 24 1 6.2395 12.0888 7.7130 25 6 5.2020 9.8768 3.2771 26 6 4.0686 8.8462 3.2788 27 6 1.7117 2.1457 1.3432 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.5420 2.1733 -1.1504 34 1 3.9779 1.4596 -1.0181 35 1 4.0013 0.6619 0.5871 36 1 4.0892 3.5952 -0.0929 37 1 4.7696 2.7448 1.3206 38 1 2.7390 6.6438 3.4306 39 1 5.1397 7.4854 1.9973 40 1 5.1619 7.0721 5.0217 41 1 6.0435 6.0757 3.8382 42 1 7.3517 8.0180 3.1151 43 1 7.4766 7.8669 4.8855 44 1 6.4634 13.1095 3.7102 45 1 5.6193 9.9593 2.2735 46 1 4.8158 10.8452 3.5953 47 1 3.3323 9.1139 2.5211 48 1 3.5929 8.8303 4.2595 49 1 1.8013 1.4446 2.1729 50 1 0.7092 2.5724 1.3124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117281020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:12 Heat of formation + Delta-G solvation = -119.602162 kcal Electronic energy + Delta-G solvation = -30319.210969 eV Core-core repulsion = 26152.947939 eV Total energy + Delta-G solvation = -4166.263030 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02851 -40.66697 -39.48438 -38.82655 -36.84787 -35.98695 -33.97001 -33.75949 -31.87520 -31.73191 -31.27000 -29.46500 -27.44853 -26.34441 -24.62525 -23.93358 -23.36635 -22.84254 -21.38561 -21.26890 -20.69592 -19.13238 -18.52367 -18.28847 -17.80808 -17.36890 -17.08717 -16.70085 -16.26332 -15.89255 -15.82463 -15.42011 -15.35646 -15.03652 -14.87154 -14.74015 -14.58286 -14.26797 -14.15452 -14.14251 -13.67119 -13.37145 -13.24279 -13.04500 -12.95474 -12.78239 -12.62592 -12.61311 -12.51566 -12.40543 -12.24306 -12.05101 -11.89947 -11.87513 -11.61595 -11.47534 -11.38750 -11.03364 -10.65977 -10.56781 -10.23669 -9.86204 -8.71580 -7.88616 -5.33893 0.27309 1.15358 1.47889 1.49483 1.59228 2.05549 2.36348 2.51589 3.06189 3.22930 3.28669 3.39169 3.54931 3.64947 3.72389 3.81741 3.96975 4.19924 4.20673 4.26256 4.38273 4.41724 4.42199 4.56384 4.59118 4.61990 4.70997 4.80665 4.85035 4.85309 4.88060 4.94059 5.00216 5.04285 5.09918 5.11006 5.14367 5.24409 5.26698 5.32189 5.42409 5.45001 5.63751 5.68451 5.93305 6.15925 6.38587 6.58424 6.74052 6.88264 7.13740 7.83222 8.35797 9.18653 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035880 B = 0.002022 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.182827 B =13842.563054 C =14014.309667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.132 4.132 3 C 0.123 3.877 4 O -0.564 6.564 5 C -0.116 4.116 6 C 0.106 3.894 7 N -0.584 5.584 8 C 0.520 3.480 9 O -0.546 6.546 10 C 0.505 3.495 11 O -0.535 6.535 12 N -0.684 5.684 13 C 0.161 3.839 14 C -0.125 4.125 15 C 0.146 3.854 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.068 0.932 19 C -0.050 4.050 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.270 1.270 25 C 0.180 3.820 26 C -0.132 4.132 27 C 0.075 3.925 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.389 0.611 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.416 0.584 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.014 0.986 43 H 0.060 0.940 44 H 0.251 0.749 45 H 0.000 1.000 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.099 0.901 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.592 -27.345 -8.018 31.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.170 4.170 3 C 0.081 3.919 4 O -0.373 6.373 5 C -0.154 4.154 6 C -0.016 4.016 7 N -0.317 5.317 8 C 0.303 3.697 9 O -0.425 6.425 10 C 0.286 3.714 11 O -0.413 6.413 12 N -0.336 5.336 13 C 0.057 3.943 14 C -0.165 4.165 15 C 0.020 3.980 16 N -0.333 5.333 17 C -0.393 4.393 18 H 0.085 0.915 19 C -0.246 4.246 20 N -0.580 5.580 21 Si 0.796 3.204 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.195 1.195 25 C 0.053 3.947 26 C -0.172 4.172 27 C -0.046 4.046 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.240 0.760 34 H 0.117 0.883 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.253 0.747 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.031 0.969 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.018 0.982 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.117 0.883 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.775 -27.047 -8.250 30.631 hybrid contribution -0.609 1.269 0.868 1.654 sum -12.384 -25.778 -7.382 29.536 Atomic orbital electron populations 1.21864 0.94791 1.03233 1.02205 1.22003 0.97101 0.93354 1.04574 1.22417 0.94268 0.91448 0.83746 1.86552 1.27306 1.75874 1.47529 1.22858 0.93156 0.96206 1.03167 1.22256 0.87130 0.97567 0.94617 1.48262 1.19648 1.18095 1.45693 1.19791 0.87296 0.82333 0.80274 1.90737 1.30176 1.77052 1.44527 1.20149 0.87547 0.83345 0.80379 1.90740 1.30071 1.76839 1.43601 1.45967 1.20623 1.18509 1.48472 1.20887 0.86961 0.87045 0.99362 1.22206 0.97013 0.98746 0.98547 1.20963 0.93877 0.84643 0.98535 1.44348 1.41651 1.12220 1.35077 1.19495 1.37485 0.87889 0.94426 0.91458 1.25815 1.01358 0.98791 0.98596 1.70174 1.55250 1.11159 1.21458 0.85275 0.77405 0.78139 0.79582 1.21237 1.21850 1.19505 1.20557 0.87137 0.95855 0.91108 1.22306 0.99151 0.93671 1.02028 1.23388 0.92418 0.88973 0.99853 0.92469 0.91990 0.91120 0.89790 0.89119 0.76038 0.88303 0.86411 0.91950 0.90410 0.74712 0.91020 0.91683 0.91494 0.96851 0.92112 0.94007 0.98214 0.91784 0.90537 0.91295 0.88314 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 9.41 71.98 0.68 -0.11 16 2 C -0.13 -0.75 5.25 30.59 0.16 -0.59 16 3 C 0.12 1.38 1.00 -9.32 -0.01 1.37 16 4 O -0.56 -8.14 13.17 -148.98 -1.96 -10.10 16 5 C -0.12 -1.36 6.15 31.78 0.20 -1.17 16 6 C 0.11 2.09 5.49 86.73 0.48 2.56 16 7 N -0.58 -12.98 3.32 -812.91 -2.70 -15.68 16 8 C 0.52 14.54 7.91 87.27 0.69 15.23 16 9 O -0.55 -16.92 16.73 -3.24 -0.05 -16.98 16 10 C 0.51 15.41 7.82 87.27 0.68 16.10 16 11 O -0.54 -18.09 13.78 -3.25 -0.04 -18.13 16 12 N -0.68 -20.40 5.07 -443.74 -2.25 -22.65 16 13 C 0.16 5.54 2.41 45.02 0.11 5.65 16 14 C -0.13 -4.43 5.65 30.68 0.17 -4.25 16 15 C 0.15 6.20 6.52 86.36 0.56 6.76 16 16 N -0.61 -30.65 2.99 -699.10 -2.09 -32.74 16 17 C -0.26 -14.41 9.58 84.03 0.81 -13.61 16 18 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 19 C -0.05 -2.79 4.92 84.86 0.42 -2.38 16 20 N -0.93 -55.08 11.20 21.65 0.24 -54.84 16 21 Si 0.97 44.70 29.59 68.60 2.03 46.73 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 C 0.18 8.60 5.30 86.36 0.46 9.06 16 26 C -0.13 -4.83 5.55 30.67 0.17 -4.66 16 27 C 0.08 1.15 5.38 86.93 0.47 1.61 16 28 H 0.06 0.32 7.51 -2.38 -0.02 0.30 16 29 H 0.06 0.26 6.75 -2.38 -0.02 0.24 16 30 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.32 8.07 -2.39 -0.02 0.31 16 33 H 0.39 3.26 7.24 -74.05 -0.54 2.72 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.12 0.79 8.04 -2.39 -0.02 0.77 16 36 H 0.06 1.50 7.57 -2.38 -0.02 1.48 16 37 H 0.08 1.58 7.69 -2.39 -0.02 1.56 16 38 H 0.42 11.26 8.07 -92.70 -0.75 10.51 16 39 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.06 2.50 7.93 -2.38 -0.02 2.48 16 44 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 45 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.06 3.44 6.06 -2.39 -0.01 3.42 16 47 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 49 H 0.10 1.19 7.99 -2.39 -0.02 1.18 16 50 H 0.08 1.31 7.97 -2.39 -0.02 1.29 16 Total: -1.00 -70.28 393.48 -1.13 -71.41 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.33 Total: 21.41 kcal Atomic # 6 Polarization: 25.54 SS G_CDS: 6.04 Total: 31.57 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -6.80 Total: -125.91 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -2.06 Total: -45.21 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.28 -1.13 -71.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117281020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.191 kcal (2) G-P(sol) polarization free energy of solvation -70.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds