Wall clock time and date at job start Sat Apr 11 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 O 1.42898 * 110.88711 * 61.11962 * 3 2 1 5 5 C 1.55159 * 111.00221 * 184.99925 * 3 2 1 6 6 C 1.54323 * 102.94079 * 153.57575 * 5 3 2 7 7 N 1.47025 * 107.27305 * 337.80347 * 6 5 3 8 8 C 1.34777 * 125.65124 * 178.95793 * 7 6 5 9 9 O 1.21344 * 120.00211 * 179.97438 * 8 7 6 10 10 C 1.49449 * 119.99737 * 359.97438 * 8 7 6 11 11 O 1.21353 * 119.99835 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99737 * 179.97438 * 10 8 7 13 13 C 1.46505 * 119.99647 * 179.97438 * 12 10 8 14 14 C 1.53041 * 109.45739 * 275.06408 * 13 12 10 15 15 C 1.53199 * 109.31121 * 178.61592 * 14 13 12 16 16 N 1.46926 * 108.77536 * 54.63680 * 15 14 13 17 17 C 1.36929 * 120.63401 * 126.37040 * 16 15 14 18 18 H 1.08004 * 120.00024 * 207.70009 * 17 16 15 19 19 C 1.38806 * 120.00168 * 27.69592 * 17 16 15 20 20 N 1.31618 * 120.00081 * 17.35220 * 19 17 16 21 21 Si 1.86803 * 120.00613 * 197.35492 * 19 17 16 22 22 H 1.48505 * 109.47000 * 59.99445 * 21 19 17 23 23 H 1.48495 * 109.47415 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46647 * 299.99885 * 21 19 17 25 25 C 1.46931 * 118.73501 * 306.38960 * 16 15 14 26 26 C 1.53042 * 109.45697 * 154.99913 * 13 12 10 27 27 C 1.47424 * 108.70122 * 358.94420 * 7 6 5 28 28 H 1.08994 * 109.47620 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47088 * 300.00628 * 1 2 3 30 30 H 1.09001 * 109.47120 * 59.99652 * 1 2 3 31 31 H 1.09002 * 109.46823 * 119.99896 * 2 1 3 32 32 H 1.09004 * 109.46760 * 239.99795 * 2 1 3 33 33 H 0.96700 * 114.00098 * 300.70020 * 4 3 2 34 34 H 1.09000 * 110.72102 * 271.93791 * 5 3 2 35 35 H 1.09002 * 110.71747 * 35.03587 * 5 3 2 36 36 H 1.09001 * 109.88286 * 97.22425 * 6 5 3 37 37 H 1.09003 * 109.88266 * 218.39115 * 6 5 3 38 38 H 0.96995 * 119.99972 * 359.97438 * 12 10 8 39 39 H 1.08998 * 109.46417 * 35.02299 * 13 12 10 40 40 H 1.09000 * 109.49741 * 298.56654 * 14 13 12 41 41 H 1.08995 * 109.49876 * 58.66930 * 14 13 12 42 42 H 1.09000 * 109.58618 * 294.84892 * 15 14 13 43 43 H 1.08995 * 109.58627 * 174.42251 * 15 14 13 44 44 H 0.96996 * 120.00782 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.59050 * 293.82313 * 25 16 15 46 46 H 1.09002 * 109.58361 * 173.39218 * 25 16 15 47 47 H 1.08996 * 109.49428 * 301.33008 * 26 13 12 48 48 H 1.08994 * 109.50316 * 61.39970 * 26 13 12 49 49 H 1.08999 * 110.37134 * 265.28718 * 27 7 6 50 50 H 1.08998 * 110.36863 * 142.96180 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.6020 2.1378 1.1690 5 6 3.5859 1.4857 -0.1262 6 6 3.8410 2.8606 -0.7790 7 7 2.6007 3.2564 -1.4621 8 6 2.4086 4.4069 -2.1373 9 8 1.3387 4.6294 -2.6649 10 6 3.5132 5.4086 -2.2363 11 8 4.5830 5.1863 -1.7083 12 7 3.3212 6.5589 -2.9120 13 6 4.4040 7.5411 -3.0086 14 6 4.3915 8.4372 -1.7680 15 6 5.5460 9.4404 -1.8560 16 7 5.4433 10.1691 -3.1277 17 6 5.4279 11.5381 -3.1481 18 1 4.9266 12.0606 -3.9494 19 6 6.0565 12.2544 -2.1389 20 7 6.9415 11.6627 -1.3650 21 14 5.6464 14.0582 -1.8790 22 1 4.2004 14.1977 -1.5708 23 1 6.4478 14.5901 -0.7476 24 1 5.9654 14.8211 -3.1125 25 6 5.3571 9.4007 -4.3771 26 6 4.2047 8.3980 -4.2609 27 6 1.6021 2.1863 -1.2864 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 0.6406 2.1795 1.2647 34 1 4.0547 1.4324 0.8564 35 1 3.9432 0.6794 -0.7667 36 1 4.0925 3.5939 -0.0128 37 1 4.6535 2.7829 -1.5016 38 1 2.4663 6.7364 -3.3343 39 1 5.3604 7.0223 -3.0719 40 1 3.4450 8.9753 -1.7174 41 1 4.5100 7.8237 -0.8749 42 1 6.4964 8.9082 -1.8154 43 1 5.4829 10.1437 -1.0258 44 1 7.3806 12.1631 -0.6595 45 1 6.2921 8.8653 -4.5422 46 1 5.1694 10.0779 -5.2103 47 1 4.1904 7.7566 -5.1420 48 1 3.2597 8.9360 -4.1871 49 1 1.6176 1.5089 -2.1401 50 1 0.6074 2.6130 -1.1577 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117281022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:15 Heat of formation + Delta-G solvation = -95.488325 kcal Electronic energy + Delta-G solvation = -30401.517744 eV Core-core repulsion = 26236.300368 eV Total energy + Delta-G solvation = -4165.217376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.98210 -39.67229 -38.33860 -37.29999 -35.93678 -34.45563 -33.34620 -32.13508 -31.00784 -30.12410 -29.55663 -28.69151 -26.10995 -25.01179 -23.45148 -22.56750 -22.26772 -21.41982 -20.70467 -20.03613 -19.21855 -17.89644 -17.46726 -16.87495 -16.70518 -16.36172 -15.77321 -15.56193 -14.97244 -14.80097 -14.42422 -14.32109 -14.11668 -13.87971 -13.65988 -13.52427 -13.28953 -13.14663 -13.00319 -12.86351 -12.55986 -12.44107 -12.30547 -12.19411 -11.79130 -11.63594 -11.50601 -11.45132 -11.11528 -10.95716 -10.92247 -10.71354 -10.45875 -10.41947 -10.27502 -10.09229 -9.77881 -9.74545 -9.37194 -8.99489 -8.79102 -8.43544 -6.69919 -5.78585 -3.21211 1.46796 2.22940 3.25812 3.39018 3.43978 3.45370 3.46507 3.64038 3.95163 4.12920 4.22866 4.47281 4.49925 4.61804 4.77487 4.88305 4.91007 5.12718 5.20966 5.25202 5.28483 5.38851 5.41496 5.43587 5.45727 5.52718 5.58504 5.62284 5.69228 5.78311 5.78997 5.92782 6.04175 6.20418 6.25228 6.38918 6.55037 6.63761 6.72842 6.77996 6.91301 6.98190 7.18974 7.33084 7.37032 7.66445 7.73208 7.79605 8.12135 8.44720 9.20661 9.83958 10.40273 11.30067 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025037 B = 0.002155 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.097851 B =12987.413485 C =13291.023934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.140 4.140 3 C 0.117 3.883 4 O -0.544 6.544 5 C -0.122 4.122 6 C 0.110 3.890 7 N -0.589 5.589 8 C 0.522 3.478 9 O -0.527 6.527 10 C 0.505 3.495 11 O -0.516 6.516 12 N -0.691 5.691 13 C 0.149 3.851 14 C -0.148 4.148 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.149 3.851 26 C -0.140 4.140 27 C 0.082 3.918 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.377 0.623 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.407 0.593 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.091 0.909 44 H 0.255 0.745 45 H 0.021 0.979 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.081 0.919 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.383 -25.100 1.376 27.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.178 4.178 3 C 0.075 3.925 4 O -0.350 6.350 5 C -0.160 4.160 6 C -0.012 4.012 7 N -0.323 5.323 8 C 0.306 3.694 9 O -0.403 6.403 10 C 0.285 3.715 11 O -0.392 6.392 12 N -0.343 5.343 13 C 0.047 3.953 14 C -0.188 4.188 15 C 0.048 3.952 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.022 3.978 26 C -0.180 4.180 27 C -0.041 4.041 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.242 0.758 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.415 -24.876 1.639 27.018 hybrid contribution -1.246 0.886 -0.069 1.530 sum -11.660 -23.990 1.571 26.720 Atomic orbital electron populations 1.21851 0.95229 1.02673 1.02151 1.22047 0.96744 0.95326 1.03676 1.22337 0.95119 0.90654 0.84390 1.86583 1.27546 1.77987 1.42901 1.22807 0.93124 0.97378 1.02717 1.22188 0.85999 0.95814 0.97178 1.48120 1.15501 1.17125 1.51559 1.20122 0.88458 0.81718 0.79130 1.90742 1.26726 1.76754 1.46086 1.19840 0.87829 0.83151 0.80677 1.90758 1.26126 1.77241 1.45074 1.46179 1.18133 1.17514 1.52452 1.21229 0.89318 0.87759 0.97018 1.22597 1.02401 0.98078 0.95708 1.20770 0.91927 0.92175 0.90366 1.44103 1.85482 1.02239 0.99684 1.19129 1.28017 0.81238 1.10057 0.91636 1.25052 0.96295 0.97902 1.00385 1.70019 1.26233 1.36238 1.22069 0.86363 0.77901 0.84984 0.77469 1.21032 1.21638 1.20876 1.20842 0.93716 0.92599 0.90646 1.22369 1.02128 0.98180 0.95330 1.23034 0.93489 0.89368 0.98188 0.91882 0.92389 0.92193 0.90324 0.90402 0.77395 0.88676 0.89037 0.89687 0.90065 0.75805 0.89587 0.92410 0.92752 0.96023 0.89087 0.93504 0.96088 0.92165 0.92405 0.91573 0.90094 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.46 37.16 0.35 -0.28 16 2 C -0.14 -0.64 5.25 -26.73 -0.14 -0.78 16 3 C 0.12 0.82 0.99 -88.47 -0.09 0.73 16 4 O -0.54 -4.59 13.16 -35.23 -0.46 -5.05 16 5 C -0.12 -0.90 6.16 -24.90 -0.15 -1.05 16 6 C 0.11 1.18 5.49 -3.06 -0.02 1.16 16 7 N -0.59 -7.01 3.33 -171.02 -0.57 -7.58 16 8 C 0.52 7.60 7.91 -11.59 -0.09 7.50 16 9 O -0.53 -8.41 16.73 5.50 0.09 -8.32 16 10 C 0.51 8.01 7.82 -11.59 -0.09 7.92 16 11 O -0.52 -9.07 13.79 5.49 0.08 -8.99 16 12 N -0.69 -10.67 5.07 -54.19 -0.27 -10.95 16 13 C 0.15 2.62 2.42 -67.89 -0.16 2.45 16 14 C -0.15 -2.96 5.65 -26.61 -0.15 -3.11 16 15 C 0.17 4.21 5.31 -3.71 -0.02 4.19 16 16 N -0.59 -14.74 2.99 -172.31 -0.52 -15.25 16 17 C -0.25 -6.95 9.58 -15.07 -0.14 -7.09 16 18 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 21 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 26 C -0.14 -2.36 5.55 -26.61 -0.15 -2.50 16 27 C 0.08 0.71 5.14 -2.53 -0.01 0.70 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.20 6.89 -51.93 -0.36 -0.16 16 30 H 0.06 0.25 7.32 -51.93 -0.38 -0.13 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.30 8.13 -51.93 -0.42 -0.13 16 33 H 0.38 2.01 7.53 45.56 0.34 2.36 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.48 8.03 -51.93 -0.42 0.06 16 36 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 37 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 38 H 0.41 5.69 8.07 -40.82 -0.33 5.36 16 39 H 0.09 1.63 7.58 -51.93 -0.39 1.23 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 2.46 6.04 -51.93 -0.31 2.15 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.08 0.60 8.04 -51.93 -0.42 0.19 16 50 H 0.08 0.76 7.94 -51.93 -0.41 0.35 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -32.80 393.57 -8.77 -41.57 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.66 Total: 4.74 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -0.98 Total: 12.85 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.74 Total: -59.42 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.30 Total: -22.36 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.80 -8.77 -41.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117281022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.921 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds