Wall clock time and date at job start Sat Apr 11 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 O 1.42898 * 110.88711 * 61.11962 * 3 2 1 5 5 C 1.55159 * 111.00221 * 184.99925 * 3 2 1 6 6 C 1.54323 * 102.94079 * 153.57575 * 5 3 2 7 7 N 1.47025 * 107.27305 * 337.80347 * 6 5 3 8 8 C 1.34777 * 125.65124 * 178.95793 * 7 6 5 9 9 O 1.21344 * 120.00211 * 179.97438 * 8 7 6 10 10 C 1.49449 * 119.99737 * 359.97438 * 8 7 6 11 11 O 1.21353 * 119.99835 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99737 * 179.97438 * 10 8 7 13 13 C 1.46505 * 119.99647 * 179.97438 * 12 10 8 14 14 C 1.53041 * 109.45739 * 275.06408 * 13 12 10 15 15 C 1.53199 * 109.31121 * 178.61592 * 14 13 12 16 16 N 1.46926 * 108.77536 * 54.63680 * 15 14 13 17 17 C 1.36929 * 120.63401 * 126.37040 * 16 15 14 18 18 H 1.08004 * 120.00024 * 207.70009 * 17 16 15 19 19 C 1.38806 * 120.00168 * 27.69592 * 17 16 15 20 20 N 1.31618 * 120.00081 * 17.35220 * 19 17 16 21 21 Si 1.86803 * 120.00613 * 197.35492 * 19 17 16 22 22 H 1.48505 * 109.47000 * 59.99445 * 21 19 17 23 23 H 1.48495 * 109.47415 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46647 * 299.99885 * 21 19 17 25 25 C 1.46931 * 118.73501 * 306.38960 * 16 15 14 26 26 C 1.53042 * 109.45697 * 154.99913 * 13 12 10 27 27 C 1.47424 * 108.70122 * 358.94420 * 7 6 5 28 28 H 1.08994 * 109.47620 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47088 * 300.00628 * 1 2 3 30 30 H 1.09001 * 109.47120 * 59.99652 * 1 2 3 31 31 H 1.09002 * 109.46823 * 119.99896 * 2 1 3 32 32 H 1.09004 * 109.46760 * 239.99795 * 2 1 3 33 33 H 0.96700 * 114.00098 * 300.70020 * 4 3 2 34 34 H 1.09000 * 110.72102 * 271.93791 * 5 3 2 35 35 H 1.09002 * 110.71747 * 35.03587 * 5 3 2 36 36 H 1.09001 * 109.88286 * 97.22425 * 6 5 3 37 37 H 1.09003 * 109.88266 * 218.39115 * 6 5 3 38 38 H 0.96995 * 119.99972 * 359.97438 * 12 10 8 39 39 H 1.08998 * 109.46417 * 35.02299 * 13 12 10 40 40 H 1.09000 * 109.49741 * 298.56654 * 14 13 12 41 41 H 1.08995 * 109.49876 * 58.66930 * 14 13 12 42 42 H 1.09000 * 109.58618 * 294.84892 * 15 14 13 43 43 H 1.08995 * 109.58627 * 174.42251 * 15 14 13 44 44 H 0.96996 * 120.00782 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.59050 * 293.82313 * 25 16 15 46 46 H 1.09002 * 109.58361 * 173.39218 * 25 16 15 47 47 H 1.08996 * 109.49428 * 301.33008 * 26 13 12 48 48 H 1.08994 * 109.50316 * 61.39970 * 26 13 12 49 49 H 1.08999 * 110.37134 * 265.28718 * 27 7 6 50 50 H 1.08998 * 110.36863 * 142.96180 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.6020 2.1378 1.1690 5 6 3.5859 1.4857 -0.1262 6 6 3.8410 2.8606 -0.7790 7 7 2.6007 3.2564 -1.4621 8 6 2.4086 4.4069 -2.1373 9 8 1.3387 4.6294 -2.6649 10 6 3.5132 5.4086 -2.2363 11 8 4.5830 5.1863 -1.7083 12 7 3.3212 6.5589 -2.9120 13 6 4.4040 7.5411 -3.0086 14 6 4.3915 8.4372 -1.7680 15 6 5.5460 9.4404 -1.8560 16 7 5.4433 10.1691 -3.1277 17 6 5.4279 11.5381 -3.1481 18 1 4.9266 12.0606 -3.9494 19 6 6.0565 12.2544 -2.1389 20 7 6.9415 11.6627 -1.3650 21 14 5.6464 14.0582 -1.8790 22 1 4.2004 14.1977 -1.5708 23 1 6.4478 14.5901 -0.7476 24 1 5.9654 14.8211 -3.1125 25 6 5.3571 9.4007 -4.3771 26 6 4.2047 8.3980 -4.2609 27 6 1.6021 2.1863 -1.2864 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 0.6406 2.1795 1.2647 34 1 4.0547 1.4324 0.8564 35 1 3.9432 0.6794 -0.7667 36 1 4.0925 3.5939 -0.0128 37 1 4.6535 2.7829 -1.5016 38 1 2.4663 6.7364 -3.3343 39 1 5.3604 7.0223 -3.0719 40 1 3.4450 8.9753 -1.7174 41 1 4.5100 7.8237 -0.8749 42 1 6.4964 8.9082 -1.8154 43 1 5.4829 10.1437 -1.0258 44 1 7.3806 12.1631 -0.6595 45 1 6.2921 8.8653 -4.5422 46 1 5.1694 10.0779 -5.2103 47 1 4.1904 7.7566 -5.1420 48 1 3.2597 8.9360 -4.1871 49 1 1.6176 1.5089 -2.1401 50 1 0.6074 2.6130 -1.1577 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117281022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:14 Heat of formation + Delta-G solvation = -119.994991 kcal Electronic energy + Delta-G solvation = -30402.580432 eV Core-core repulsion = 26236.300368 eV Total energy + Delta-G solvation = -4166.280064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03692 -40.67752 -39.48660 -38.82984 -36.83322 -35.99107 -33.97426 -33.80166 -31.84936 -31.73335 -31.30598 -29.43771 -27.44205 -26.35357 -24.63648 -23.95198 -23.37307 -22.83713 -21.42652 -21.25739 -20.67321 -19.09127 -18.59424 -18.28849 -17.80936 -17.37301 -17.10096 -16.68766 -16.24927 -15.91842 -15.83389 -15.38119 -15.33885 -15.04305 -14.84586 -14.79783 -14.55612 -14.25059 -14.17949 -14.11675 -13.69257 -13.40336 -13.23342 -13.06088 -12.95746 -12.79663 -12.64753 -12.61546 -12.57521 -12.40522 -12.16030 -12.10210 -11.87074 -11.85730 -11.59389 -11.49424 -11.41549 -11.02371 -10.66151 -10.58844 -10.22329 -9.87189 -8.72638 -7.88021 -5.33439 0.26951 1.14894 1.47475 1.50249 1.56789 2.05321 2.35837 2.51470 3.05365 3.23532 3.28642 3.38800 3.53918 3.65426 3.71911 3.80316 3.99792 4.18964 4.20811 4.26435 4.37431 4.42254 4.43450 4.55488 4.58246 4.62977 4.71296 4.79606 4.84042 4.84646 4.88196 4.97063 5.01546 5.03869 5.08175 5.10212 5.14366 5.24502 5.28515 5.32514 5.42246 5.44321 5.63141 5.68433 5.92476 6.15165 6.38023 6.58764 6.73942 6.88962 7.12941 7.83744 8.35919 9.18983 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025037 B = 0.002155 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.097851 B =12987.413485 C =13291.023934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.131 4.131 3 C 0.122 3.878 4 O -0.565 6.565 5 C -0.117 4.117 6 C 0.106 3.894 7 N -0.585 5.585 8 C 0.521 3.479 9 O -0.545 6.545 10 C 0.503 3.497 11 O -0.537 6.537 12 N -0.683 5.683 13 C 0.161 3.839 14 C -0.132 4.132 15 C 0.183 3.817 16 N -0.610 5.610 17 C -0.262 4.262 18 H 0.073 0.927 19 C -0.054 4.054 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.273 1.273 25 C 0.143 3.857 26 C -0.125 4.125 27 C 0.076 3.924 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.389 0.611 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.417 0.583 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.050 0.950 42 H -0.004 1.004 43 H 0.057 0.943 44 H 0.250 0.750 45 H 0.018 0.982 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.100 0.900 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 -26.955 0.403 29.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.169 4.169 3 C 0.080 3.920 4 O -0.374 6.374 5 C -0.154 4.154 6 C -0.016 4.016 7 N -0.317 5.317 8 C 0.304 3.696 9 O -0.423 6.423 10 C 0.284 3.716 11 O -0.414 6.414 12 N -0.335 5.335 13 C 0.057 3.943 14 C -0.173 4.173 15 C 0.056 3.944 16 N -0.333 5.333 17 C -0.392 4.392 18 H 0.090 0.910 19 C -0.249 4.249 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.198 1.198 25 C 0.017 3.983 26 C -0.164 4.164 27 C -0.046 4.046 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.239 0.761 34 H 0.115 0.885 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.254 0.746 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.014 0.986 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.091 0.909 49 H 0.118 0.882 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.214 -26.777 0.647 29.438 hybrid contribution -0.669 1.393 0.242 1.564 sum -12.882 -25.384 0.889 28.479 Atomic orbital electron populations 1.21867 0.94771 1.03181 1.02200 1.21998 0.97078 0.93289 1.04563 1.22410 0.94744 0.91745 0.83075 1.86555 1.28854 1.78484 1.43461 1.22864 0.93613 0.95904 1.03034 1.22246 0.85594 0.97215 0.96517 1.48267 1.16703 1.16768 1.50003 1.19762 0.87682 0.82270 0.79869 1.90730 1.26955 1.77291 1.47351 1.20197 0.88017 0.83407 0.80005 1.90755 1.27130 1.77745 1.45784 1.45940 1.17990 1.17023 1.52527 1.20900 0.89588 0.87693 0.96087 1.22342 1.00363 0.97403 0.97143 1.20479 0.92412 0.91942 0.89518 1.44351 1.85694 1.02109 1.01186 1.19511 1.27155 0.82602 1.09940 0.90975 1.25843 0.96509 1.01977 1.00573 1.70184 1.27641 1.37665 1.22754 0.85328 0.77525 0.80275 0.77245 1.20461 1.22294 1.19849 1.21032 0.95071 0.93168 0.89000 1.22185 1.00557 0.97527 0.96150 1.23346 0.92506 0.88734 0.99966 0.91140 0.92174 0.92401 0.89923 0.88993 0.76050 0.88462 0.86280 0.92205 0.90343 0.74580 0.90879 0.92325 0.93169 0.98566 0.92490 0.94127 0.96395 0.91289 0.88897 0.90904 0.88161 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.46 71.98 0.68 -0.19 16 2 C -0.13 -0.82 5.25 30.60 0.16 -0.66 16 3 C 0.12 1.45 0.99 -9.40 -0.01 1.44 16 4 O -0.56 -8.75 13.16 -148.98 -1.96 -10.71 16 5 C -0.12 -1.47 6.16 31.78 0.20 -1.28 16 6 C 0.11 2.20 5.49 86.73 0.48 2.68 16 7 N -0.58 -13.31 3.33 -813.36 -2.71 -16.02 16 8 C 0.52 14.74 7.91 87.27 0.69 15.43 16 9 O -0.54 -16.77 16.73 -3.23 -0.05 -16.82 16 10 C 0.50 15.72 7.82 87.27 0.68 16.40 16 11 O -0.54 -19.01 13.79 -3.26 -0.04 -19.06 16 12 N -0.68 -20.29 5.07 -443.73 -2.25 -22.54 16 13 C 0.16 5.52 2.42 45.02 0.11 5.63 16 14 C -0.13 -5.36 5.65 30.67 0.17 -5.19 16 15 C 0.18 9.18 5.31 86.36 0.46 9.64 16 16 N -0.61 -30.65 2.99 -699.08 -2.09 -32.74 16 17 C -0.26 -14.35 9.58 84.03 0.81 -13.55 16 18 H 0.07 3.78 7.89 -2.91 -0.02 3.76 16 19 C -0.05 -3.03 4.91 84.86 0.42 -2.61 16 20 N -0.94 -56.38 11.19 21.65 0.24 -56.14 16 21 Si 0.97 45.18 29.59 68.60 2.03 47.21 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.14 5.72 6.52 86.36 0.56 6.29 16 26 C -0.12 -3.93 5.55 30.67 0.17 -3.76 16 27 C 0.08 1.18 5.14 86.86 0.45 1.62 16 28 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.29 6.89 -2.39 -0.02 0.28 16 30 H 0.06 0.34 7.32 -2.39 -0.02 0.33 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 0.35 8.13 -2.38 -0.02 0.33 16 33 H 0.39 3.63 7.53 -74.06 -0.56 3.08 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.12 0.86 8.03 -2.39 -0.02 0.84 16 36 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 37 H 0.08 1.66 7.70 -2.39 -0.02 1.64 16 38 H 0.42 10.89 8.07 -92.71 -0.75 10.14 16 39 H 0.07 2.75 7.58 -2.39 -0.02 2.73 16 40 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 46 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 47 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.10 1.21 8.04 -2.39 -0.02 1.19 16 50 H 0.08 1.34 7.94 -2.39 -0.02 1.32 16 Total: -1.00 -72.24 393.57 -1.17 -73.41 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.35 Total: 21.50 kcal Atomic # 6 Polarization: 25.88 SS G_CDS: 6.02 Total: 31.90 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -6.81 Total: -127.44 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -2.06 Total: -46.59 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -72.24 -1.17 -73.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117281022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.584 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds