Wall clock time and date at job start Sat Apr 11 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46819 * 2 1 4 4 O 1.42898 * 110.64673 * 298.31534 * 3 2 1 5 5 C 1.55448 * 110.70589 * 174.99965 * 3 2 1 6 6 C 1.54908 * 101.45227 * 206.14705 * 5 3 2 7 7 N 1.47424 * 104.92731 * 37.00621 * 6 5 3 8 8 C 1.34774 * 125.64422 * 155.79771 * 7 6 5 9 9 O 1.21357 * 119.99649 * 180.02562 * 8 7 6 10 10 C 1.49446 * 120.00288 * 0.02562 * 8 7 6 11 11 O 1.21353 * 120.00110 * 6.45240 * 10 8 7 12 12 N 1.34783 * 119.99865 * 186.45214 * 10 8 7 13 13 C 1.47068 * 120.88197 * 7.98935 * 12 10 8 14 14 C 1.53703 * 108.27540 * 128.75692 * 13 12 10 15 15 N 1.46900 * 109.25470 * 54.08138 * 14 13 12 16 16 C 1.46907 * 110.99551 * 172.60795 * 15 14 13 17 17 C 1.50698 * 109.47044 * 59.39068 * 16 15 14 18 18 H 1.07998 * 120.00306 * 355.41225 * 17 16 15 19 19 C 1.37874 * 119.99812 * 175.41085 * 17 16 15 20 20 N 1.31518 * 120.00107 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00008 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46731 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47247 * 120.00224 * 21 19 17 24 24 H 1.48505 * 109.46800 * 240.00361 * 21 19 17 25 25 C 1.46890 * 111.26876 * 296.75720 * 15 14 13 26 26 C 1.47079 * 120.87841 * 188.26948 * 12 10 8 27 27 C 1.47021 * 108.70396 * 335.81323 * 7 6 5 28 28 H 1.08997 * 109.46796 * 299.99520 * 1 2 3 29 29 H 1.08998 * 109.46928 * 59.99873 * 1 2 3 30 30 H 1.09001 * 109.46734 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46796 * 240.00480 * 2 1 3 32 32 H 1.08998 * 109.46928 * 120.00127 * 2 1 3 33 33 H 0.96704 * 114.00125 * 61.68367 * 4 3 2 34 34 H 1.09001 * 111.10948 * 88.09719 * 5 3 2 35 35 H 1.08999 * 111.01339 * 324.16058 * 5 3 2 36 36 H 1.09005 * 110.36607 * 278.11248 * 6 5 3 37 37 H 1.08997 * 110.36880 * 155.90371 * 6 5 3 38 38 H 1.09001 * 109.63043 * 248.52240 * 13 12 10 39 39 H 1.08995 * 109.63397 * 9.10663 * 13 12 10 40 40 H 1.09000 * 109.64824 * 294.07574 * 14 13 12 41 41 H 1.08998 * 109.41986 * 173.94850 * 14 13 12 42 42 H 1.08998 * 109.46867 * 179.38893 * 16 15 14 43 43 H 1.08998 * 109.46769 * 299.39051 * 16 15 14 44 44 H 0.97004 * 119.99827 * 179.97438 * 20 19 17 45 45 H 1.09008 * 109.49557 * 303.14369 * 25 15 14 46 46 H 1.09000 * 109.51234 * 183.08297 * 25 15 14 47 47 H 1.08999 * 109.63114 * 350.89649 * 26 12 10 48 48 H 1.09000 * 109.62900 * 111.27956 * 26 12 10 49 49 H 1.08999 * 109.87610 * 120.47738 * 27 7 6 50 50 H 1.08995 * 109.88221 * 241.48781 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6099 2.1290 -1.1772 5 6 3.5889 1.4779 0.1267 6 6 3.8127 2.8663 0.7763 7 7 2.6888 3.0316 1.7159 8 6 2.6860 3.8250 2.8054 9 8 1.7005 3.8831 3.5111 10 6 3.8965 4.6333 3.1442 11 8 4.8374 4.6670 2.3786 12 7 3.9431 5.3248 4.3002 13 6 2.8955 5.1626 5.3196 14 6 3.5753 4.8740 6.6676 15 7 4.5582 5.9286 6.9501 16 6 5.1053 5.7886 8.3063 17 6 5.7692 4.4428 8.4437 18 1 5.7195 3.7308 7.6332 19 6 6.4403 4.1205 9.6042 20 7 6.5006 4.9873 10.5914 21 14 7.2640 2.4525 9.7743 22 1 7.0512 1.6665 8.5324 23 1 8.7199 2.6399 9.9988 24 1 6.6750 1.7248 10.9271 25 6 5.6319 5.9386 5.9477 26 6 5.0397 6.2662 4.5730 27 6 1.5717 2.1872 1.2680 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.6493 2.1997 -1.2624 34 1 4.0643 1.4236 -0.8527 35 1 3.9462 0.6799 0.7775 36 1 3.7907 3.6483 0.0172 37 1 4.7615 2.8858 1.3125 38 1 2.3088 6.0785 5.3907 39 1 2.2472 4.3292 5.0492 40 1 4.0797 3.9087 6.6245 41 1 2.8233 4.8569 7.4564 42 1 5.8381 6.5753 8.4854 43 1 4.2980 5.8715 9.0340 44 1 6.9724 4.7604 11.4080 45 1 6.1078 4.9584 5.9146 46 1 6.3719 6.6932 6.2144 47 1 5.8098 6.1628 3.8085 48 1 4.6558 7.2864 4.5701 49 1 1.3149 1.4686 2.0463 50 1 0.7065 2.8087 1.0374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118946203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:18 Heat of formation + Delta-G solvation = -86.801913 kcal Electronic energy + Delta-G solvation = -30906.063846 eV Core-core repulsion = 26741.223141 eV Total energy + Delta-G solvation = -4164.840704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10309 -39.80963 -38.32372 -37.58430 -35.95931 -34.37524 -33.32062 -32.32108 -30.97793 -30.68490 -28.75056 -28.27556 -26.09371 -25.16027 -23.70988 -23.04592 -22.49757 -21.79304 -20.64254 -20.17981 -18.94801 -17.69242 -17.29936 -16.87582 -16.40434 -16.22389 -15.82961 -15.58163 -14.95687 -14.80872 -14.54845 -14.40756 -14.36294 -14.12847 -13.90846 -13.65797 -13.48186 -13.26288 -13.12203 -12.81006 -12.67853 -12.36404 -12.22064 -12.17445 -11.86934 -11.73843 -11.52205 -11.38621 -11.16044 -11.02945 -10.97941 -10.79977 -10.64331 -10.59498 -10.41512 -10.23733 -9.93363 -9.68247 -9.11867 -8.95086 -8.50518 -8.47248 -7.25862 -6.07150 -4.16504 1.43873 2.18746 3.20090 3.23550 3.31905 3.35016 3.35462 3.60901 3.95934 4.15355 4.21992 4.26596 4.37206 4.64739 4.79138 4.93600 4.95890 4.97311 5.11527 5.23209 5.24968 5.34150 5.41036 5.47254 5.50132 5.52856 5.53128 5.61092 5.68657 5.72311 5.79757 5.80749 5.87211 5.93993 6.01099 6.22906 6.45155 6.61546 6.62456 6.72237 6.98800 7.15447 7.20294 7.36521 7.47679 7.64459 7.84959 7.96101 8.03872 8.18467 8.24276 8.93576 9.50893 10.97968 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.002659 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.127995 B =10526.662302 C =11208.880176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.141 4.141 3 C 0.120 3.880 4 O -0.547 6.547 5 C -0.123 4.123 6 C 0.103 3.897 7 N -0.590 5.590 8 C 0.523 3.477 9 O -0.512 6.512 10 C 0.507 3.493 11 O -0.530 6.530 12 N -0.570 5.570 13 C 0.077 3.923 14 C 0.050 3.950 15 N -0.542 5.542 16 C 0.187 3.813 17 C -0.551 4.551 18 H 0.056 0.944 19 C 0.065 3.935 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.051 3.949 26 C 0.112 3.888 27 C 0.083 3.917 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.378 0.622 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.031 0.969 44 H 0.262 0.738 45 H 0.043 0.957 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 -7.163 -22.719 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.179 4.179 3 C 0.078 3.922 4 O -0.354 6.354 5 C -0.161 4.161 6 C -0.019 4.019 7 N -0.324 5.324 8 C 0.308 3.692 9 O -0.389 6.389 10 C 0.289 3.711 11 O -0.408 6.408 12 N -0.302 5.302 13 C -0.045 4.045 14 C -0.080 4.080 15 N -0.266 5.266 16 C 0.062 3.938 17 C -0.590 4.590 18 H 0.074 0.926 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.078 4.078 26 C -0.010 4.010 27 C -0.040 4.040 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.146 0.854 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.093 0.907 49 H 0.100 0.900 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.296 -6.509 -22.588 25.663 hybrid contribution 0.311 -1.712 0.558 1.827 sum -9.985 -8.221 -22.030 25.546 Atomic orbital electron populations 1.21856 0.95229 1.02732 1.02093 1.22092 0.96762 0.95362 1.03700 1.22238 0.95391 0.90748 0.83821 1.86558 1.27727 1.78842 1.42254 1.22992 0.92743 0.97781 1.02601 1.22619 0.90590 0.96546 0.92174 1.48194 1.16618 1.42536 1.25038 1.20051 0.88773 0.80167 0.80244 1.90554 1.35390 1.65086 1.47837 1.19771 0.87181 0.81381 0.82776 1.90689 1.36938 1.63427 1.49730 1.48086 1.26134 1.40130 1.15878 1.23106 0.89635 1.04876 0.86856 1.22376 0.95971 0.94602 0.95017 1.62520 1.14350 1.44835 1.04923 1.19775 0.94904 0.95982 0.83185 1.21776 1.34485 1.01662 1.01047 0.92569 1.24958 0.96023 0.96930 0.95814 1.69952 1.42567 1.34767 1.05525 0.86596 0.79337 0.84378 0.78062 1.19924 1.20884 1.20878 1.22217 0.94178 1.01404 0.89988 1.22023 0.88975 0.91805 0.98181 1.22808 0.90033 0.94094 0.97018 0.92131 0.92438 0.91882 0.90354 0.90382 0.77358 0.88521 0.89011 0.90326 0.88078 0.90992 0.85447 0.94037 0.90194 0.94657 0.95139 0.92812 0.93867 0.90111 0.89228 0.90680 0.89983 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.44 37.16 0.35 -0.37 16 2 C -0.14 -0.76 5.11 -26.73 -0.14 -0.89 16 3 C 0.12 0.86 0.95 -88.63 -0.08 0.77 16 4 O -0.55 -4.08 13.06 -35.23 -0.46 -4.54 16 5 C -0.12 -0.96 6.29 -24.42 -0.15 -1.11 16 6 C 0.10 1.10 5.96 -2.53 -0.02 1.08 16 7 N -0.59 -7.14 3.33 -171.03 -0.57 -7.71 16 8 C 0.52 7.79 7.77 -11.59 -0.09 7.70 16 9 O -0.51 -8.24 13.52 5.49 0.07 -8.16 16 10 C 0.51 8.24 7.69 -11.58 -0.09 8.15 16 11 O -0.53 -8.99 13.35 5.49 0.07 -8.92 16 12 N -0.57 -9.51 3.00 -172.70 -0.52 -10.03 16 13 C 0.08 1.28 6.14 -3.37 -0.02 1.26 16 14 C 0.05 0.97 5.17 -3.46 -0.02 0.95 16 15 N -0.54 -11.43 4.83 -235.47 -1.14 -12.57 16 16 C 0.19 4.73 5.11 -4.97 -0.03 4.70 16 17 C -0.55 -14.99 7.76 -34.44 -0.27 -15.26 16 18 H 0.06 1.54 5.87 -52.49 -0.31 1.23 16 19 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 20 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.05 0.99 5.25 -3.71 -0.02 0.97 16 26 C 0.11 1.82 6.61 -3.60 -0.02 1.80 16 27 C 0.08 0.76 5.24 -3.06 -0.02 0.75 16 28 H 0.06 0.29 7.15 -51.93 -0.37 -0.08 16 29 H 0.06 0.20 6.94 -51.93 -0.36 -0.16 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.38 1.59 7.60 45.56 0.35 1.94 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.63 8.04 -51.93 -0.42 0.21 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.22 6.34 -51.93 -0.33 0.89 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.13 2.11 4.44 -54.23 -0.24 1.87 16 40 H 0.04 0.90 6.62 -51.93 -0.34 0.55 16 41 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 42 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 43 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 45 H 0.04 0.93 7.11 -51.92 -0.37 0.56 16 46 H 0.08 1.52 8.06 -51.93 -0.42 1.10 16 47 H 0.09 1.40 7.05 -51.93 -0.37 1.04 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.08 0.74 7.55 -51.93 -0.39 0.35 16 50 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -31.86 385.63 -9.06 -40.92 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.34 Total: 1.77 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: -0.71 Total: 12.23 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -1.49 Total: -55.50 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.31 Total: -21.62 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.86 -9.06 -40.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118946203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.879 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds