Wall clock time and date at job start Sat Apr 11 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47646 * 2 1 4 4 O 1.42904 * 110.63662 * 61.85772 * 3 2 1 5 5 C 1.55151 * 110.72275 * 184.99947 * 3 2 1 6 6 C 1.54911 * 101.61507 * 153.84639 * 5 3 2 7 7 N 1.47470 * 104.80980 * 323.04241 * 6 5 3 8 8 C 1.34780 * 125.62812 * 204.06839 * 7 6 5 9 9 O 1.21346 * 120.00159 * 180.02562 * 8 7 6 10 10 C 1.49453 * 119.99861 * 0.02562 * 8 7 6 11 11 O 1.21350 * 120.00238 * 353.44893 * 10 8 7 12 12 N 1.34776 * 120.00092 * 173.44302 * 10 8 7 13 13 C 1.47073 * 120.88511 * 181.24599 * 12 10 8 14 14 C 1.53689 * 108.28282 * 128.75623 * 13 12 10 15 15 N 1.46903 * 109.25639 * 54.07823 * 14 13 12 16 16 C 1.46904 * 110.99685 * 172.61006 * 15 14 13 17 17 C 1.50693 * 109.47104 * 294.30352 * 16 15 14 18 18 H 1.07999 * 120.00330 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99657 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99932 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00133 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47617 * 89.99581 * 21 19 17 23 23 H 1.48502 * 109.47128 * 210.00128 * 21 19 17 24 24 H 1.48501 * 109.47073 * 329.99702 * 21 19 17 25 25 C 1.46899 * 111.27125 * 296.75843 * 15 14 13 26 26 C 1.47079 * 120.87997 * 1.52106 * 12 10 8 27 27 C 1.47022 * 108.72213 * 24.07368 * 7 6 5 28 28 H 1.09005 * 109.46885 * 59.99620 * 1 2 3 29 29 H 1.08993 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46461 * 300.00095 * 1 2 3 31 31 H 1.09003 * 109.46461 * 239.99905 * 2 1 3 32 32 H 1.09005 * 109.46885 * 120.00380 * 2 1 3 33 33 H 0.96704 * 114.00174 * 303.14188 * 4 3 2 34 34 H 1.08996 * 111.00708 * 271.94124 * 5 3 2 35 35 H 1.08998 * 111.00412 * 35.75678 * 5 3 2 36 36 H 1.08999 * 110.36674 * 81.84907 * 6 5 3 37 37 H 1.09001 * 110.36367 * 204.17628 * 6 5 3 38 38 H 1.09004 * 109.62595 * 248.52539 * 13 12 10 39 39 H 1.09006 * 109.62766 * 9.09860 * 13 12 10 40 40 H 1.09005 * 109.64769 * 294.07940 * 14 13 12 41 41 H 1.08996 * 109.42577 * 173.94931 * 14 13 12 42 42 H 1.09001 * 109.46929 * 54.30908 * 16 15 14 43 43 H 1.09004 * 109.46653 * 174.30154 * 16 15 14 44 44 H 0.96995 * 120.00213 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.49202 * 303.14567 * 25 15 14 46 46 H 1.09000 * 109.51325 * 183.07558 * 25 15 14 47 47 H 1.09007 * 109.62938 * 350.90030 * 26 12 10 48 48 H 1.09001 * 109.63110 * 111.47514 * 26 12 10 49 49 H 1.09000 * 109.87864 * 239.55303 * 27 7 6 50 50 H 1.08996 * 110.00877 * 118.46500 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.6134 2.1276 1.1792 5 6 3.5861 1.4780 -0.1265 6 6 3.8140 2.8657 -0.7762 7 7 2.6895 3.0313 -1.7158 8 6 2.6868 3.8254 -2.8048 9 8 1.7011 3.8847 -3.5101 10 6 3.8978 4.6331 -3.1437 11 8 4.8383 4.6671 -2.3777 12 7 3.9453 5.3236 -4.3001 13 6 5.1379 6.1028 -4.6657 14 6 5.5572 5.7031 -6.0893 15 7 4.4110 5.8614 -6.9944 16 6 4.8127 5.6587 -8.3928 17 6 5.7602 6.7547 -8.8072 18 1 6.0368 7.5246 -8.1022 19 6 6.2741 6.7746 -10.0865 20 7 7.1007 7.7314 -10.4484 21 14 5.7952 5.4433 -11.3062 22 1 4.5840 5.8684 -12.0529 23 1 6.9117 5.2206 -12.2596 24 1 5.5092 4.1824 -10.5758 25 6 3.3124 4.9584 -6.6260 26 6 2.8035 5.3228 -5.2273 27 6 1.5723 2.1870 -1.2682 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.6546 2.1343 1.3050 34 1 4.0597 1.4230 0.8537 35 1 3.9434 0.6791 -0.7761 36 1 3.7923 3.6480 -0.0175 37 1 4.7629 2.8823 -1.3124 38 1 4.9036 7.1669 -4.6349 39 1 5.9468 5.8828 -3.9689 40 1 5.8854 4.6637 -6.0964 41 1 6.3735 6.3449 -6.4204 42 1 5.3083 4.6930 -8.4921 43 1 3.9295 5.6812 -9.0314 44 1 7.4620 7.7456 -11.3484 45 1 3.6719 3.9295 -6.6257 46 1 2.5006 5.0599 -7.3463 47 1 2.0681 4.5868 -4.9020 48 1 2.3491 6.3133 -5.2495 49 1 1.3157 1.4684 -2.0465 50 1 0.7062 2.8067 -1.0360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118946204.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:20 Heat of formation + Delta-G solvation = -77.201267 kcal Electronic energy + Delta-G solvation = -30630.497630 eV Core-core repulsion = 26466.073240 eV Total energy + Delta-G solvation = -4164.424389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.22001 -39.90859 -38.43215 -37.70925 -36.06421 -34.42384 -33.38018 -32.36692 -31.09218 -30.80077 -29.01649 -28.66152 -26.40514 -25.32244 -23.91356 -23.02846 -22.44059 -21.43575 -20.70629 -20.29888 -19.08935 -17.77901 -17.43354 -16.96419 -16.67308 -16.46540 -15.97341 -15.69548 -15.02830 -14.64413 -14.63255 -14.59960 -14.41920 -14.19049 -13.97922 -13.87438 -13.54686 -13.37622 -13.23342 -12.98218 -12.80657 -12.46023 -12.39453 -12.32747 -12.24471 -11.82026 -11.61095 -11.57812 -11.42281 -11.12935 -10.99285 -10.83751 -10.71451 -10.55758 -10.51492 -10.32151 -9.93158 -9.37705 -9.14602 -9.00106 -8.61414 -8.58631 -7.44789 -6.08207 -4.06023 1.33506 2.08542 3.11138 3.25304 3.26565 3.34175 3.35912 3.54739 3.87164 4.07709 4.14452 4.15345 4.39368 4.56464 4.70689 4.71532 4.85988 4.89159 5.04081 5.17219 5.23616 5.25290 5.28085 5.38676 5.39582 5.43274 5.44097 5.53036 5.60004 5.63074 5.65761 5.72655 5.76126 5.77367 5.86788 6.17115 6.18933 6.36240 6.42361 6.54433 6.80556 6.89348 6.93295 7.09435 7.29385 7.53673 7.57063 7.82337 7.93796 7.96949 8.61045 8.99280 9.53233 11.04654 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.002263 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.087088 B =12370.157751 C =12823.662458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.142 4.142 3 C 0.119 3.881 4 O -0.547 6.547 5 C -0.124 4.124 6 C 0.103 3.897 7 N -0.588 5.588 8 C 0.525 3.475 9 O -0.511 6.511 10 C 0.506 3.494 11 O -0.529 6.529 12 N -0.570 5.570 13 C 0.111 3.889 14 C 0.052 3.948 15 N -0.528 5.528 16 C 0.162 3.838 17 C -0.511 4.511 18 H 0.082 0.918 19 C 0.069 3.931 20 N -0.899 5.899 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.040 3.960 26 C 0.060 3.940 27 C 0.083 3.917 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.378 0.622 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.025 0.975 41 H 0.105 0.895 42 H -0.012 1.012 43 H 0.026 0.974 44 H 0.264 0.736 45 H 0.025 0.975 46 H 0.082 0.918 47 H 0.149 0.851 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.488 -16.068 23.369 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.180 4.180 3 C 0.078 3.922 4 O -0.353 6.353 5 C -0.162 4.162 6 C -0.019 4.019 7 N -0.322 5.322 8 C 0.310 3.690 9 O -0.389 6.389 10 C 0.288 3.712 11 O -0.407 6.407 12 N -0.302 5.302 13 C -0.010 4.010 14 C -0.077 4.077 15 N -0.253 5.253 16 C 0.036 3.964 17 C -0.549 4.549 18 H 0.100 0.900 19 C -0.133 4.133 20 N -0.538 5.538 21 Si 0.703 3.297 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.194 1.194 25 C -0.090 4.090 26 C -0.062 4.062 27 C -0.039 4.039 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.227 0.773 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.044 0.956 41 H 0.123 0.877 42 H 0.006 0.994 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.101 0.899 47 H 0.165 0.835 48 H 0.093 0.907 49 H 0.100 0.900 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.925 -15.313 23.264 30.297 hybrid contribution -0.548 -1.436 -1.131 1.908 sum -12.472 -16.748 22.133 30.429 Atomic orbital electron populations 1.21861 0.95183 1.02791 1.02131 1.22108 0.96790 0.95326 1.03774 1.22174 0.95395 0.90735 0.83912 1.86576 1.28061 1.77933 1.42769 1.22946 0.92835 0.97734 1.02676 1.22652 0.90478 0.96633 0.92165 1.48216 1.16691 1.42413 1.24836 1.20090 0.88644 0.80112 0.80174 1.90368 1.35609 1.65209 1.47674 1.19730 0.87323 0.81391 0.82791 1.90701 1.37513 1.63675 1.48766 1.48166 1.18205 1.45602 1.18245 1.22149 0.86620 0.95621 0.96629 1.22450 0.95005 0.99828 0.90421 1.61936 1.07521 1.51239 1.04621 1.20179 0.95958 0.96112 0.84132 1.21015 1.25376 1.10265 0.98289 0.90044 1.24903 0.94793 0.95591 0.98027 1.69889 1.31794 1.32651 1.19416 0.86861 0.78436 0.82909 0.81537 1.20105 1.21194 1.19350 1.22462 0.96126 0.94346 0.96017 1.23353 0.88806 1.05759 0.88235 1.22800 0.90044 0.94113 0.96977 0.92097 0.91809 0.92419 0.90365 0.90291 0.77331 0.88467 0.89042 0.90185 0.88050 0.90038 0.88977 0.95640 0.87700 0.99400 0.95598 0.92619 0.95717 0.89948 0.83527 0.90677 0.89985 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 9.45 37.16 0.35 -0.23 16 2 C -0.14 -0.63 5.11 -26.73 -0.14 -0.76 16 3 C 0.12 0.75 0.96 -88.79 -0.09 0.67 16 4 O -0.55 -3.71 13.11 -35.23 -0.46 -4.17 16 5 C -0.12 -0.85 6.25 -24.58 -0.15 -1.00 16 6 C 0.10 1.00 5.96 -2.50 -0.01 0.99 16 7 N -0.59 -6.53 3.33 -170.99 -0.57 -7.10 16 8 C 0.52 7.24 7.83 -11.58 -0.09 7.15 16 9 O -0.51 -7.59 13.36 5.50 0.07 -7.52 16 10 C 0.51 7.72 7.72 -11.58 -0.09 7.63 16 11 O -0.53 -8.51 13.34 5.50 0.07 -8.43 16 12 N -0.57 -9.06 3.00 -172.69 -0.52 -9.58 16 13 C 0.11 1.82 6.62 -3.37 -0.02 1.80 16 14 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 15 N -0.53 -10.98 4.62 -235.47 -1.09 -12.07 16 16 C 0.16 3.91 3.79 -4.98 -0.02 3.89 16 17 C -0.51 -14.30 8.96 -34.44 -0.31 -14.60 16 18 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 21 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 25 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 26 C 0.06 0.92 6.35 -3.60 -0.02 0.90 16 27 C 0.08 0.69 5.25 -3.07 -0.02 0.67 16 28 H 0.06 0.24 7.15 -51.93 -0.37 -0.13 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.15 6.83 -51.93 -0.35 -0.20 16 31 H 0.08 0.34 8.13 -51.93 -0.42 -0.09 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.38 1.35 7.45 45.56 0.34 1.68 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.53 8.04 -51.93 -0.42 0.11 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.11 6.35 -51.93 -0.33 0.78 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.09 1.43 7.07 -51.93 -0.37 1.06 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 2.18 6.67 -51.93 -0.35 1.84 16 42 H -0.01 -0.29 7.19 -51.93 -0.37 -0.66 16 43 H 0.03 0.62 7.40 -51.93 -0.38 0.24 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.08 1.36 7.99 -51.93 -0.41 0.94 16 47 H 0.15 2.22 3.92 -56.53 -0.22 2.00 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.08 0.65 7.55 -51.93 -0.39 0.25 16 50 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -32.97 384.38 -8.75 -41.72 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.41 Total: 0.53 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -0.75 Total: 10.61 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -1.40 Total: -55.23 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.31 Total: -20.13 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.97 -8.75 -41.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118946204.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.484 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds