Wall clock time and date at job start Sat Apr 11 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47646 * 2 1 4 4 O 1.42904 * 110.63662 * 61.85772 * 3 2 1 5 5 C 1.55151 * 110.72275 * 184.99947 * 3 2 1 6 6 C 1.54911 * 101.61507 * 153.84639 * 5 3 2 7 7 N 1.47470 * 104.80980 * 323.04241 * 6 5 3 8 8 C 1.34780 * 125.62812 * 204.06839 * 7 6 5 9 9 O 1.21346 * 120.00159 * 180.02562 * 8 7 6 10 10 C 1.49453 * 119.99861 * 0.02562 * 8 7 6 11 11 O 1.21350 * 120.00238 * 353.44893 * 10 8 7 12 12 N 1.34776 * 120.00092 * 173.44302 * 10 8 7 13 13 C 1.47073 * 120.88511 * 181.24599 * 12 10 8 14 14 C 1.53689 * 108.28282 * 128.75623 * 13 12 10 15 15 N 1.46903 * 109.25639 * 54.07823 * 14 13 12 16 16 C 1.46904 * 110.99685 * 172.61006 * 15 14 13 17 17 C 1.50693 * 109.47104 * 294.30352 * 16 15 14 18 18 H 1.07999 * 120.00330 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99657 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99932 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00133 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47617 * 89.99581 * 21 19 17 23 23 H 1.48502 * 109.47128 * 210.00128 * 21 19 17 24 24 H 1.48501 * 109.47073 * 329.99702 * 21 19 17 25 25 C 1.46899 * 111.27125 * 296.75843 * 15 14 13 26 26 C 1.47079 * 120.87997 * 1.52106 * 12 10 8 27 27 C 1.47022 * 108.72213 * 24.07368 * 7 6 5 28 28 H 1.09005 * 109.46885 * 59.99620 * 1 2 3 29 29 H 1.08993 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46461 * 300.00095 * 1 2 3 31 31 H 1.09003 * 109.46461 * 239.99905 * 2 1 3 32 32 H 1.09005 * 109.46885 * 120.00380 * 2 1 3 33 33 H 0.96704 * 114.00174 * 303.14188 * 4 3 2 34 34 H 1.08996 * 111.00708 * 271.94124 * 5 3 2 35 35 H 1.08998 * 111.00412 * 35.75678 * 5 3 2 36 36 H 1.08999 * 110.36674 * 81.84907 * 6 5 3 37 37 H 1.09001 * 110.36367 * 204.17628 * 6 5 3 38 38 H 1.09004 * 109.62595 * 248.52539 * 13 12 10 39 39 H 1.09006 * 109.62766 * 9.09860 * 13 12 10 40 40 H 1.09005 * 109.64769 * 294.07940 * 14 13 12 41 41 H 1.08996 * 109.42577 * 173.94931 * 14 13 12 42 42 H 1.09001 * 109.46929 * 54.30908 * 16 15 14 43 43 H 1.09004 * 109.46653 * 174.30154 * 16 15 14 44 44 H 0.96995 * 120.00213 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.49202 * 303.14567 * 25 15 14 46 46 H 1.09000 * 109.51325 * 183.07558 * 25 15 14 47 47 H 1.09007 * 109.62938 * 350.90030 * 26 12 10 48 48 H 1.09001 * 109.63110 * 111.47514 * 26 12 10 49 49 H 1.09000 * 109.87864 * 239.55303 * 27 7 6 50 50 H 1.08996 * 110.00877 * 118.46500 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.6134 2.1276 1.1792 5 6 3.5861 1.4780 -0.1265 6 6 3.8140 2.8657 -0.7762 7 7 2.6895 3.0313 -1.7158 8 6 2.6868 3.8254 -2.8048 9 8 1.7011 3.8847 -3.5101 10 6 3.8978 4.6331 -3.1437 11 8 4.8383 4.6671 -2.3777 12 7 3.9453 5.3236 -4.3001 13 6 5.1379 6.1028 -4.6657 14 6 5.5572 5.7031 -6.0893 15 7 4.4110 5.8614 -6.9944 16 6 4.8127 5.6587 -8.3928 17 6 5.7602 6.7547 -8.8072 18 1 6.0368 7.5246 -8.1022 19 6 6.2741 6.7746 -10.0865 20 7 7.1007 7.7314 -10.4484 21 14 5.7952 5.4433 -11.3062 22 1 4.5840 5.8684 -12.0529 23 1 6.9117 5.2206 -12.2596 24 1 5.5092 4.1824 -10.5758 25 6 3.3124 4.9584 -6.6260 26 6 2.8035 5.3228 -5.2273 27 6 1.5723 2.1870 -1.2682 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.6546 2.1343 1.3050 34 1 4.0597 1.4230 0.8537 35 1 3.9434 0.6791 -0.7761 36 1 3.7923 3.6480 -0.0175 37 1 4.7629 2.8823 -1.3124 38 1 4.9036 7.1669 -4.6349 39 1 5.9468 5.8828 -3.9689 40 1 5.8854 4.6637 -6.0964 41 1 6.3735 6.3449 -6.4204 42 1 5.3083 4.6930 -8.4921 43 1 3.9295 5.6812 -9.0314 44 1 7.4620 7.7456 -11.3484 45 1 3.6719 3.9295 -6.6257 46 1 2.5006 5.0599 -7.3463 47 1 2.0681 4.5868 -4.9020 48 1 2.3491 6.3133 -5.2495 49 1 1.3157 1.4684 -2.0465 50 1 0.7062 2.8067 -1.0360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118946204.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:20 Heat of formation + Delta-G solvation = -103.125709 kcal Electronic energy + Delta-G solvation = -30631.621798 eV Core-core repulsion = 26466.073240 eV Total energy + Delta-G solvation = -4165.548557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.25963 -40.78984 -39.49094 -39.07753 -36.90684 -35.87669 -34.42566 -33.80406 -32.22714 -31.74260 -30.69205 -29.43932 -27.80502 -26.38460 -25.15547 -24.07432 -23.28030 -23.11386 -21.68235 -21.15349 -20.31608 -19.02695 -18.49491 -18.37931 -17.92634 -17.42105 -17.11439 -16.50875 -16.32236 -16.16055 -15.94460 -15.69085 -15.61278 -15.21058 -15.09729 -14.91700 -14.55000 -14.48239 -14.35205 -14.26596 -13.84518 -13.63821 -13.34981 -13.30545 -12.99606 -12.89258 -12.81036 -12.62749 -12.46828 -12.41895 -12.28960 -12.16796 -11.93379 -11.88183 -11.78192 -11.49280 -11.38762 -11.00325 -10.78953 -10.22363 -10.09829 -9.85961 -9.10858 -8.28712 -6.32254 0.20014 1.04879 1.34913 1.35820 1.46205 1.96563 2.18161 2.33758 2.90392 3.03285 3.14195 3.14627 3.37918 3.50824 3.68584 3.88750 3.98229 4.15858 4.16657 4.20352 4.25814 4.34852 4.40494 4.41675 4.46882 4.51885 4.58795 4.74762 4.76660 4.78981 4.83198 4.85330 4.90863 4.93217 4.94763 5.03957 5.04875 5.11712 5.13982 5.22665 5.29055 5.40662 5.50479 5.83778 5.95237 6.12593 6.25068 6.46483 6.58676 6.73672 6.76171 6.77354 7.31204 8.87446 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.002263 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.087088 B =12370.157751 C =12823.662458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C 0.128 3.872 4 O -0.560 6.560 5 C -0.119 4.119 6 C 0.099 3.901 7 N -0.582 5.582 8 C 0.523 3.477 9 O -0.525 6.525 10 C 0.504 3.496 11 O -0.539 6.539 12 N -0.577 5.577 13 C 0.123 3.877 14 C 0.057 3.943 15 N -0.541 5.541 16 C 0.172 3.828 17 C -0.516 4.516 18 H 0.042 0.958 19 C 0.009 3.991 20 N -0.946 5.946 21 Si 0.947 3.053 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.254 1.254 25 C 0.041 3.959 26 C 0.070 3.930 27 C 0.078 3.922 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.391 0.609 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.023 0.977 41 H 0.078 0.922 42 H -0.015 1.015 43 H 0.033 0.967 44 H 0.267 0.733 45 H 0.026 0.974 46 H 0.095 0.905 47 H 0.159 0.841 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.371 -18.696 24.426 33.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.173 4.173 3 C 0.086 3.914 4 O -0.369 6.369 5 C -0.157 4.157 6 C -0.023 4.023 7 N -0.314 5.314 8 C 0.307 3.693 9 O -0.405 6.405 10 C 0.287 3.713 11 O -0.417 6.417 12 N -0.309 5.309 13 C 0.001 3.999 14 C -0.072 4.072 15 N -0.266 5.266 16 C 0.045 3.955 17 C -0.554 4.554 18 H 0.060 0.940 19 C -0.189 4.189 20 N -0.586 5.586 21 Si 0.770 3.230 22 H -0.189 1.189 23 H -0.208 1.208 24 H -0.178 1.178 25 C -0.088 4.088 26 C -0.051 4.051 27 C -0.044 4.044 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.243 0.757 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.042 0.958 41 H 0.097 0.903 42 H 0.003 0.997 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.113 0.887 47 H 0.175 0.825 48 H 0.095 0.905 49 H 0.107 0.893 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.835 -17.966 24.380 33.296 hybrid contribution 0.062 -0.569 -1.304 1.424 sum -13.773 -18.535 23.076 32.646 Atomic orbital electron populations 1.21874 0.94545 1.03189 1.02426 1.22062 0.97303 0.93709 1.04262 1.22131 0.94858 0.91510 0.82855 1.86551 1.29540 1.78158 1.42678 1.22975 0.93529 0.96028 1.03127 1.22702 0.89532 0.98433 0.91605 1.48330 1.17943 1.41362 1.23811 1.19721 0.87825 0.80654 0.81100 1.90333 1.35646 1.65995 1.48497 1.20076 0.87834 0.81074 0.82293 1.90696 1.38152 1.63884 1.49008 1.48197 1.17999 1.45903 1.18803 1.21935 0.87387 0.95754 0.94847 1.22339 0.94061 0.99037 0.91734 1.61854 1.08675 1.52818 1.03283 1.19948 0.95076 0.94161 0.86316 1.21229 1.26046 1.10377 0.97785 0.93955 1.25828 0.94689 0.98131 1.00252 1.70041 1.33400 1.34997 1.20188 0.85725 0.78415 0.80061 0.78778 1.18870 1.20834 1.17791 1.22561 0.95112 0.93618 0.97508 1.23335 0.88621 1.06215 0.86929 1.23075 0.89182 0.93981 0.98158 0.92521 0.91387 0.91463 0.90011 0.89659 0.75748 0.87484 0.87692 0.90977 0.89405 0.89952 0.88206 0.95850 0.90347 0.99690 0.94856 0.92417 0.95606 0.88689 0.82452 0.90499 0.89269 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 9.45 71.98 0.68 -0.06 16 2 C -0.14 -0.81 5.11 30.60 0.16 -0.65 16 3 C 0.13 1.30 0.96 -9.61 -0.01 1.29 16 4 O -0.56 -6.28 13.11 -148.98 -1.95 -8.24 16 5 C -0.12 -1.36 6.25 31.98 0.20 -1.16 16 6 C 0.10 1.81 5.96 86.85 0.52 2.33 16 7 N -0.58 -12.10 3.33 -813.25 -2.71 -14.80 16 8 C 0.52 13.79 7.83 87.27 0.68 14.48 16 9 O -0.53 -14.81 13.36 -3.23 -0.04 -14.85 16 10 C 0.50 15.02 7.72 87.27 0.67 15.69 16 11 O -0.54 -17.09 13.34 -3.25 -0.04 -17.13 16 12 N -0.58 -17.91 3.00 -818.63 -2.46 -20.37 16 13 C 0.12 4.02 6.62 86.50 0.57 4.59 16 14 C 0.06 2.23 5.47 86.53 0.47 2.70 16 15 N -0.54 -22.45 4.62 -898.88 -4.15 -26.60 16 16 C 0.17 8.22 3.79 85.55 0.32 8.55 16 17 C -0.52 -29.59 8.96 25.60 0.23 -29.36 16 18 H 0.04 2.69 7.37 -2.91 -0.02 2.67 16 19 C 0.01 0.50 5.47 84.66 0.46 0.96 16 20 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 21 Si 0.95 43.91 27.47 68.60 1.88 45.80 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 25 C 0.04 1.36 5.62 86.38 0.49 1.85 16 26 C 0.07 2.08 6.35 86.35 0.55 2.63 16 27 C 0.08 1.12 5.25 86.73 0.46 1.58 16 28 H 0.06 0.32 7.15 -2.38 -0.02 0.30 16 29 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.07 0.17 6.83 -2.39 -0.02 0.16 16 31 H 0.08 0.46 8.13 -2.39 -0.02 0.44 16 32 H 0.08 0.45 8.14 -2.38 -0.02 0.44 16 33 H 0.39 1.82 7.45 -74.05 -0.55 1.27 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 0.93 8.04 -2.39 -0.02 0.91 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.87 6.35 -2.39 -0.02 1.85 16 38 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.10 3.10 7.07 -2.38 -0.02 3.09 16 40 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.08 3.44 6.67 -2.39 -0.02 3.43 16 42 H -0.01 -0.70 7.19 -2.39 -0.02 -0.72 16 43 H 0.03 1.55 7.40 -2.38 -0.02 1.53 16 44 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 2.94 7.99 -2.39 -0.02 2.92 16 47 H 0.16 4.51 3.92 -75.24 -0.29 4.21 16 48 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.09 1.20 7.55 -2.39 -0.02 1.18 16 50 H 0.08 1.14 8.07 -2.39 -0.02 1.12 16 Total: -1.00 -71.43 384.38 -2.66 -74.09 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.06 Total: 15.27 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: 6.45 Total: 25.40 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -9.02 Total: -120.34 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -2.04 Total: -40.22 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.80 kcal Total: -71.43 -2.66 -74.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118946204.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.040 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds