Wall clock time and date at job start Sat Apr 11 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47374 * 2 1 4 4 O 1.42897 * 109.47009 * 239.99678 * 2 1 3 5 5 C 1.52999 * 109.46831 * 119.99743 * 2 1 3 6 6 C 1.50707 * 109.47188 * 59.99924 * 5 2 1 7 7 O 1.21275 * 119.99748 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99821 * 179.97438 * 6 5 2 9 9 C 1.47890 * 134.33985 * 180.02562 * 8 6 5 10 10 C 1.52386 * 85.59352 * 156.48652 * 9 8 6 11 11 C 1.47886 * 134.34474 * 359.97182 * 8 6 5 12 12 C 1.53637 * 116.37921 * 141.33966 * 10 9 8 13 13 C 1.54595 * 102.81370 * 95.34845 * 12 10 9 14 14 N 1.47557 * 107.32808 * 20.84134 * 13 12 10 15 15 C 1.46906 * 110.99755 * 123.21876 * 14 13 12 16 16 C 1.50699 * 109.47140 * 69.87674 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00058 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00409 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46949 * 60.00154 * 23 21 19 25 25 H 1.48496 * 109.47431 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47561 * 300.00356 * 23 21 19 27 27 C 1.48139 * 108.68546 * 0.87288 * 14 13 12 28 28 H 1.09000 * 109.47065 * 300.00211 * 1 2 3 29 29 H 1.09002 * 109.47096 * 59.99706 * 1 2 3 30 30 H 1.08996 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47182 * 179.97438 * 3 2 1 32 32 H 1.09009 * 109.47081 * 299.99860 * 3 2 1 33 33 H 1.09000 * 109.47197 * 59.99870 * 3 2 1 34 34 H 0.96705 * 114.00163 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47333 * 299.99881 * 5 2 1 36 36 H 1.08999 * 109.47349 * 179.97438 * 5 2 1 37 37 H 1.09000 * 113.85537 * 42.31825 * 9 8 6 38 38 H 1.09002 * 113.96434 * 270.66536 * 9 8 6 39 39 H 1.08999 * 113.85743 * 89.34816 * 11 8 6 40 40 H 1.08999 * 113.85213 * 317.67871 * 11 8 6 41 41 H 1.09001 * 110.74629 * 337.01966 * 12 10 9 42 42 H 1.09000 * 110.74819 * 213.67876 * 12 10 9 43 43 H 1.08999 * 109.87377 * 261.41188 * 13 12 10 44 44 H 1.08997 * 109.99576 * 140.34369 * 13 12 10 45 45 H 1.09004 * 109.47040 * 189.87611 * 15 14 13 46 46 H 1.09000 * 109.47033 * 309.87564 * 15 14 13 47 47 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 48 48 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 49 49 H 1.08999 * 110.41105 * 96.34150 * 27 14 13 50 50 H 1.09008 * 110.40619 * 218.76786 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 6 1.5375 -2.1421 1.2494 7 8 0.8399 -2.5386 0.3400 8 7 1.8635 -2.9720 2.2600 9 6 1.5591 -4.3841 2.5770 10 6 2.8295 -4.3467 3.4176 11 6 2.6687 -2.8334 3.4927 12 6 2.7870 -5.1051 4.7531 13 6 3.4022 -6.4758 4.3887 14 7 4.1895 -6.2900 3.1546 15 6 5.5854 -6.7023 3.3536 16 6 5.6506 -8.2007 3.5002 17 8 4.6343 -8.8603 3.4438 18 7 6.8383 -8.8077 3.6938 19 6 6.8977 -10.1709 3.8266 20 1 5.9928 -10.7583 3.7764 21 6 8.1221 -10.7969 4.0257 22 7 9.2233 -10.0822 4.0863 23 14 8.2031 -12.6542 4.2074 24 1 7.6679 -13.2954 2.9795 25 1 9.6142 -13.0710 4.4079 26 1 7.3915 -13.0730 5.3783 27 6 4.1086 -4.8674 2.7497 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 2.9703 -0.7122 -1.2327 35 1 1.6766 -0.2073 2.1393 36 1 3.1299 -0.7216 1.2491 37 1 1.6188 -5.0516 1.7174 38 1 0.6484 -4.5205 3.1603 39 1 2.0976 -2.4931 4.3564 40 1 3.5994 -2.2838 3.3517 41 1 1.7597 -5.2225 5.0979 42 1 3.3921 -4.5979 5.5046 43 1 2.6094 -7.2037 4.2163 44 1 4.0514 -6.8189 5.1942 45 1 6.1811 -6.3950 2.4940 46 1 5.9782 -6.2316 4.2549 47 1 7.6510 -8.2802 3.7385 48 1 10.0780 -10.5191 4.2256 49 1 4.9775 -4.3187 3.1131 50 1 4.0320 -4.7845 1.6654 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147462054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:25 Heat of formation + Delta-G solvation = -74.592150 kcal Electronic energy + Delta-G solvation = -29857.223912 eV Core-core repulsion = 25692.912662 eV Total energy + Delta-G solvation = -4164.311249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18028 -39.62866 -38.35643 -37.40803 -36.25529 -33.86417 -32.98365 -31.76553 -31.13716 -29.75520 -28.48209 -27.64423 -27.29587 -26.40857 -25.17605 -23.96123 -21.22462 -20.90636 -19.80479 -19.13815 -18.77140 -17.83096 -17.39190 -16.91766 -16.22487 -16.00539 -15.88820 -15.31023 -15.22133 -15.00436 -14.65981 -14.49197 -14.18627 -13.96154 -13.79584 -13.47000 -13.34862 -12.99278 -12.71638 -12.56174 -12.52694 -12.42801 -12.19817 -12.12897 -11.91337 -11.82758 -11.76709 -11.47514 -11.35831 -11.15122 -11.07028 -10.94898 -10.87938 -10.56243 -10.43367 -10.40172 -10.20068 -9.61075 -9.47406 -8.87746 -8.44220 -7.95372 -7.89130 -6.40300 -3.80931 2.46887 2.56957 3.20980 3.26444 3.30908 3.81242 3.87785 3.93107 4.11888 4.18304 4.25170 4.30510 4.39139 4.57613 4.66522 4.72237 4.82593 4.97529 5.02299 5.07398 5.10109 5.14828 5.21690 5.25170 5.29438 5.41297 5.45514 5.52428 5.57948 5.59422 5.61968 5.64952 5.67811 5.75150 5.78782 5.82351 5.89671 5.94073 6.07546 6.19131 6.30343 6.42794 7.22517 7.24131 7.46429 7.51495 7.56301 8.05157 8.07680 8.63763 9.19890 9.56319 10.08578 10.77491 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025272 B = 0.001910 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.681923 B =14657.141407 C =15019.356358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 C -0.178 4.178 4 O -0.543 6.543 5 C -0.164 4.164 6 C 0.534 3.466 7 O -0.517 6.517 8 N -0.648 5.648 9 C 0.129 3.871 10 C -0.103 4.103 11 C 0.116 3.884 12 C -0.130 4.130 13 C 0.058 3.942 14 N -0.505 5.505 15 C 0.041 3.959 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.069 3.931 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.369 0.631 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.051 0.949 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.682 24.550 0.095 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.103 3.897 3 C -0.236 4.236 4 O -0.347 6.347 5 C -0.205 4.205 6 C 0.323 3.677 7 O -0.392 6.392 8 N -0.385 5.385 9 C 0.007 3.993 10 C -0.104 4.104 11 C -0.008 4.008 12 C -0.169 4.169 13 C -0.070 4.070 14 N -0.228 5.228 15 C -0.090 4.090 16 C 0.229 3.771 17 O -0.459 6.459 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.059 4.059 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.215 0.785 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.446 23.573 -1.102 26.680 hybrid contribution 1.832 0.084 1.102 2.140 sum -10.614 23.658 0.000 25.930 Atomic orbital electron populations 1.21989 0.92354 1.05142 1.01461 1.20901 0.95633 0.89584 0.83604 1.22522 1.01420 0.96605 1.03063 1.86724 1.25822 1.79325 1.42841 1.22438 1.02762 0.93764 1.01491 1.20139 0.80075 0.86514 0.80973 1.90704 1.37261 1.76316 1.34907 1.50272 1.52792 1.13657 1.21758 1.22923 0.96331 0.81696 0.98310 1.22426 0.96757 0.94391 0.96861 1.23024 0.95139 0.95788 0.86820 1.22645 1.02173 0.96703 0.95381 1.22770 0.98086 0.95483 0.90625 1.63316 1.10193 1.17079 1.32260 1.22081 0.89754 0.96294 1.00914 1.19738 0.84627 0.88419 0.84306 1.90522 1.34315 1.65836 1.55234 1.41856 1.07104 1.07921 1.63493 1.19641 0.94791 0.82095 1.46201 0.88007 1.25250 0.94792 1.00510 0.97456 1.69605 0.98419 1.36417 1.50054 0.85921 0.76983 0.82284 0.79052 1.19904 1.21019 1.19961 1.22620 0.94290 0.88407 1.00543 0.92123 0.92204 0.89079 0.92266 0.91366 0.91574 0.78461 0.88441 0.88910 0.89156 0.89672 0.89319 0.89922 0.90309 0.90875 0.89816 0.92497 0.89510 0.93318 0.77565 0.91884 0.93078 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.52 37.16 0.32 -1.11 16 2 C 0.14 1.19 0.98 -90.62 -0.09 1.10 16 3 C -0.18 -1.00 8.81 37.15 0.33 -0.68 16 4 O -0.54 -5.70 11.88 -53.48 -0.64 -6.34 16 5 C -0.16 -1.20 4.70 -27.88 -0.13 -1.33 16 6 C 0.53 5.99 7.61 -10.98 -0.08 5.91 16 7 O -0.52 -7.98 13.68 -12.69 -0.17 -8.16 16 8 N -0.65 -6.39 3.62 -186.83 -0.68 -7.07 16 9 C 0.13 1.37 8.14 -3.59 -0.03 1.34 16 10 C -0.10 -0.97 0.99 -154.85 -0.15 -1.12 16 11 C 0.12 0.80 7.98 -3.60 -0.03 0.77 16 12 C -0.13 -1.25 6.35 -25.56 -0.16 -1.42 16 13 C 0.06 0.84 5.67 -2.63 -0.01 0.83 16 14 N -0.50 -8.00 4.86 -233.13 -1.13 -9.13 16 15 C 0.04 0.71 5.03 -4.97 -0.02 0.69 16 16 C 0.44 10.37 7.43 -10.99 -0.08 10.29 16 17 O -0.58 -15.47 15.12 5.55 0.08 -15.39 16 18 N -0.57 -14.26 5.29 -10.96 -0.06 -14.32 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 23 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.07 0.82 6.09 -2.93 -0.02 0.80 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.14 5.51 -51.93 -0.29 0.85 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.37 2.51 9.05 45.56 0.41 2.93 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.16 8.12 -51.93 -0.42 0.74 16 38 H 0.09 0.80 8.04 -51.93 -0.42 0.38 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.08 0.66 7.99 -51.93 -0.41 0.24 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.06 0.91 7.31 -51.93 -0.38 0.53 16 45 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 46 H 0.05 0.75 7.96 -51.93 -0.41 0.34 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 50 H 0.08 1.04 8.07 -51.92 -0.42 0.62 16 LS Contribution 402.68 15.07 6.07 6.07 Total: -1.00 -35.20 402.68 -8.88 -44.08 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.65 Total: 9.86 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -0.41 Total: 8.11 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -1.14 Total: -54.28 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.72 Total: -29.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.20 -8.88 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147462054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.516 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds