Wall clock time and date at job start Sat Apr 11 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 119.99884 * 2 1 4 4 C 1.53005 * 109.47177 * 125.00410 * 3 2 1 5 5 C 1.50696 * 109.54082 * 299.99948 * 4 3 2 6 6 O 1.21284 * 120.00109 * 239.99808 * 5 4 3 7 7 N 1.34777 * 120.00137 * 59.99592 * 5 4 3 8 8 C 1.46506 * 119.99873 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46684 * 180.02562 * 8 7 5 10 10 N 1.46906 * 109.46897 * 180.02562 * 9 8 7 11 11 C 1.46898 * 110.99888 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47041 * 179.97438 * 11 10 9 13 13 O 1.21297 * 119.99525 * 0.02562 * 12 11 10 14 14 N 1.34766 * 120.00156 * 180.02562 * 12 11 10 15 15 C 1.37103 * 120.00289 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99945 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99987 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00492 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99597 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47286 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46929 * 119.99841 * 19 17 15 22 22 H 1.48497 * 109.47324 * 239.99809 * 19 17 15 23 23 C 1.53180 * 109.54477 * 60.17374 * 4 3 2 24 24 C 1.53277 * 109.06377 * 176.85497 * 23 4 3 25 25 O 1.42900 * 109.46195 * 302.44330 * 24 23 4 26 26 C 1.42906 * 114.09472 * 61.16044 * 25 24 23 27 27 C 1.53094 * 109.41596 * 298.84144 * 26 25 24 28 28 H 1.08002 * 119.99859 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00334 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99859 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47740 * 5.00288 * 3 2 1 32 32 H 1.09000 * 109.47078 * 245.00119 * 3 2 1 33 33 H 0.96995 * 120.00018 * 0.27749 * 7 5 4 34 34 H 1.09000 * 109.47212 * 300.00355 * 8 7 5 35 35 H 1.09001 * 109.46577 * 60.00430 * 8 7 5 36 36 H 1.09000 * 109.47486 * 300.00065 * 9 8 7 37 37 H 1.09001 * 109.47362 * 60.00788 * 9 8 7 38 38 H 1.00901 * 111.00013 * 303.95615 * 10 9 8 39 39 H 1.08997 * 109.47334 * 299.99788 * 11 10 9 40 40 H 1.09004 * 109.47141 * 60.00372 * 11 10 9 41 41 H 0.97003 * 120.00436 * 359.97438 * 14 12 11 42 42 H 0.96997 * 120.00382 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.51992 * 296.84871 * 23 4 3 44 44 H 1.08999 * 109.52214 * 57.02973 * 23 4 3 45 45 H 1.09003 * 109.45698 * 182.45201 * 24 23 4 46 46 H 1.08998 * 109.46608 * 62.45139 * 24 23 4 47 47 H 1.09002 * 109.47798 * 178.86018 * 26 25 24 48 48 H 1.08996 * 109.49464 * 58.83139 * 26 25 24 49 49 H 1.09003 * 109.51956 * 297.70380 * 27 26 25 50 50 H 1.08996 * 109.57496 * 177.54615 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 2.2655 1.1983 2.4703 6 8 2.3232 2.0757 3.3056 7 7 1.5132 0.1028 2.6945 8 6 0.7655 -0.0284 3.9476 9 6 0.0010 -1.3537 3.9488 10 7 -0.7492 -1.4850 5.2050 11 6 -1.4968 -2.7489 5.2420 12 6 -2.2516 -2.8482 6.5426 13 8 -2.1746 -1.9537 7.3583 14 7 -3.0121 -3.9308 6.7995 15 6 -3.6992 -4.0209 7.9825 16 1 -3.6307 -3.2245 8.7088 17 6 -4.4828 -5.1374 8.2475 18 7 -4.5658 -6.1066 7.3641 19 14 -5.4183 -5.2604 9.8597 20 1 -5.1598 -4.0470 10.6759 21 1 -6.8729 -5.3681 9.5809 22 1 -4.9665 -6.4635 10.6037 23 6 4.0293 0.1747 1.0550 24 6 5.0448 0.2592 2.2000 25 8 5.7035 1.5267 2.1596 26 6 4.8278 2.6446 2.3197 27 6 3.8050 2.6572 1.1806 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6212 1.4026 -0.9314 33 1 1.4702 -0.6007 2.0282 34 1 1.4590 -0.0086 4.7883 35 1 0.0608 0.7982 4.0383 36 1 -0.6925 -1.3739 3.1081 37 1 0.7060 -2.1800 3.8583 38 1 -0.1362 -1.4043 6.0024 39 1 -2.2004 -2.7795 4.4101 40 1 -0.8018 -3.5847 5.1611 41 1 -3.0739 -4.6460 6.1471 42 1 -5.1125 -6.8862 7.5493 43 1 3.4934 -0.7729 1.1097 44 1 4.5505 0.2447 0.1003 45 1 5.7815 -0.5368 2.0914 46 1 4.5277 0.1484 3.1531 47 1 5.4081 3.5670 2.2974 48 1 4.3077 2.5654 3.2743 49 1 4.3218 2.7774 0.2285 50 1 3.1089 3.4835 1.3241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149305894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:28 Heat of formation + Delta-G solvation = -103.112234 kcal Electronic energy + Delta-G solvation = -29769.646697 eV Core-core repulsion = 25604.098724 eV Total energy + Delta-G solvation = -4165.547973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38601 -38.58758 -38.27704 -36.51747 -36.32751 -34.38310 -33.75949 -33.14722 -31.46726 -31.25279 -29.43613 -28.10214 -26.17918 -24.39898 -24.16825 -23.59438 -22.44577 -21.91454 -20.21231 -19.73501 -19.28373 -17.93093 -17.12720 -16.71008 -16.31904 -16.27201 -16.15605 -15.87188 -15.38052 -15.25977 -14.93653 -14.63972 -14.47320 -14.36347 -14.02416 -13.94248 -13.52177 -13.41093 -13.23853 -13.07999 -12.65666 -12.56324 -12.42009 -12.03325 -11.92856 -11.87120 -11.61472 -11.54192 -11.49178 -11.43431 -11.07110 -10.93666 -10.82071 -10.35839 -10.24974 -10.02772 -9.84730 -9.57152 -9.54654 -9.17295 -8.53420 -8.16192 -7.99216 -6.44458 -3.85252 1.76161 2.39638 2.86185 3.14820 3.25723 3.33254 3.58733 3.87050 4.00071 4.06962 4.18297 4.27392 4.39448 4.50802 4.57716 4.65131 4.71931 4.85160 4.88092 4.95992 5.08721 5.14623 5.15995 5.19376 5.23412 5.24226 5.34516 5.35921 5.43992 5.47664 5.51572 5.61282 5.68372 5.69274 5.76336 5.83975 5.89033 5.91873 6.14184 6.18690 6.24363 6.27052 6.90318 7.06400 7.26271 7.53125 7.53489 7.99747 8.03691 8.58062 9.15347 9.51017 10.02240 10.73311 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.001830 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.075912 B =15297.068023 C =15808.696646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.180 4.180 3 C -0.080 4.080 4 C -0.074 4.074 5 C 0.523 3.477 6 O -0.535 6.535 7 N -0.723 5.723 8 C 0.118 3.882 9 C 0.050 3.950 10 N -0.664 5.664 11 C 0.052 3.948 12 C 0.440 3.560 13 O -0.582 6.582 14 N -0.563 5.563 15 C -0.299 4.299 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.144 4.144 24 C 0.057 3.943 25 O -0.383 6.383 26 C 0.048 3.952 27 C -0.129 4.129 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.399 0.601 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.352 0.648 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.049 0.951 47 H 0.092 0.908 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.251 10.157 -20.384 28.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.198 4.198 3 C -0.117 4.117 4 C -0.078 4.078 5 C 0.308 3.692 6 O -0.412 6.412 7 N -0.377 5.377 8 C -0.006 4.006 9 C -0.080 4.080 10 N -0.298 5.298 11 C -0.080 4.080 12 C 0.225 3.775 13 O -0.466 6.466 14 N -0.200 5.200 15 C -0.428 4.428 16 H 0.122 0.878 17 C -0.180 4.180 18 N -0.543 5.543 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.181 4.181 24 C -0.020 4.020 25 O -0.302 6.302 26 C -0.028 4.028 27 C -0.167 4.167 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.237 0.763 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.172 0.828 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.115 0.885 46 H 0.068 0.932 47 H 0.110 0.890 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.873 11.592 -19.435 28.227 hybrid contribution -0.340 -1.788 0.111 1.823 sum 16.534 9.804 -19.324 27.256 Atomic orbital electron populations 1.24016 0.95820 1.02571 0.98184 1.22926 0.96233 0.98387 1.02285 1.20780 0.97529 0.96247 0.97142 1.20910 0.95454 0.98007 0.93402 1.20371 0.79065 0.81633 0.88084 1.90674 1.63516 1.40230 1.46794 1.46240 1.48545 1.22015 1.20923 1.21293 0.95045 0.98459 0.85781 1.22069 0.96046 0.95252 0.94622 1.59944 1.30886 1.35508 1.03427 1.21671 0.97466 0.90123 0.98767 1.19771 0.84722 0.84354 0.88647 1.90538 1.67213 1.39830 1.48990 1.41863 1.41425 1.18027 1.18690 1.19763 1.22946 1.04882 0.95226 0.87824 1.25272 0.98035 0.95312 0.99378 1.69613 1.40726 1.08723 1.35262 0.85792 0.78885 0.78386 0.81248 1.19179 1.20727 1.20757 1.22359 0.97055 0.97476 1.01259 1.22609 0.95787 0.86612 0.96968 1.87912 1.34393 1.13953 1.93912 1.22853 0.91987 0.89136 0.98856 1.22037 0.98453 0.95823 1.00381 0.88312 0.87893 0.86803 0.90647 0.89612 0.76295 0.91463 0.90174 0.90525 0.95101 0.82818 0.89487 0.93752 0.77466 0.91909 0.90363 0.89592 0.88526 0.93236 0.88975 0.90466 0.90438 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 13.92 29.02 0.40 -0.60 16 2 C -0.18 -0.97 5.81 -36.03 -0.21 -1.18 16 3 C -0.08 -0.46 4.73 -27.88 -0.13 -0.59 16 4 C -0.07 -0.55 0.51 -155.48 -0.08 -0.63 16 5 C 0.52 5.42 5.11 -10.99 -0.06 5.36 16 6 O -0.54 -7.55 13.85 5.55 0.08 -7.47 16 7 N -0.72 -6.56 4.77 -60.29 -0.29 -6.85 16 8 C 0.12 1.32 5.93 -4.04 -0.02 1.30 16 9 C 0.05 0.56 5.80 -3.82 -0.02 0.54 16 10 N -0.66 -10.33 6.13 -115.05 -0.70 -11.03 16 11 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 12 C 0.44 10.27 7.82 -10.99 -0.09 10.18 16 13 O -0.58 -15.79 15.78 5.54 0.09 -15.70 16 14 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 15 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 16 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 19 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.14 -0.88 4.54 -26.50 -0.12 -1.00 16 24 C 0.06 0.46 6.62 37.30 0.25 0.71 16 25 O -0.38 -3.90 10.77 -35.23 -0.38 -4.28 16 26 C 0.05 0.45 6.55 37.21 0.24 0.70 16 27 C -0.13 -1.01 4.56 -26.59 -0.12 -1.13 16 28 H 0.10 0.64 7.84 -52.49 -0.41 0.22 16 29 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16 30 H 0.11 0.46 6.76 -52.49 -0.35 0.10 16 31 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.40 2.78 4.89 -40.82 -0.20 2.58 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.35 5.71 8.43 -39.29 -0.33 5.38 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.08 0.37 6.08 -51.93 -0.32 0.06 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.47 7.38 -51.93 -0.38 0.09 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.08 0.91 5.81 -51.93 -0.30 0.61 16 49 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 0.68 8.02 -51.93 -0.42 0.26 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -33.40 397.74 -7.82 -41.22 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -8.03 Total: 13.43 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -0.23 Total: 6.55 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.33 Total: -55.69 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.21 Total: -27.46 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.40 -7.82 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149305894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.890 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds