Wall clock time and date at job start Sat Apr 11 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 119.99884 * 2 1 4 4 C 1.53005 * 109.47177 * 125.00410 * 3 2 1 5 5 C 1.50696 * 109.54082 * 299.99948 * 4 3 2 6 6 O 1.21284 * 120.00109 * 239.99808 * 5 4 3 7 7 N 1.34777 * 120.00137 * 59.99592 * 5 4 3 8 8 C 1.46506 * 119.99873 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46684 * 180.02562 * 8 7 5 10 10 N 1.46906 * 109.46897 * 180.02562 * 9 8 7 11 11 C 1.46898 * 110.99888 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47041 * 179.97438 * 11 10 9 13 13 O 1.21297 * 119.99525 * 0.02562 * 12 11 10 14 14 N 1.34766 * 120.00156 * 180.02562 * 12 11 10 15 15 C 1.37103 * 120.00289 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99945 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99987 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00492 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99597 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47286 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46929 * 119.99841 * 19 17 15 22 22 H 1.48497 * 109.47324 * 239.99809 * 19 17 15 23 23 C 1.53180 * 109.54477 * 60.17374 * 4 3 2 24 24 C 1.53277 * 109.06377 * 176.85497 * 23 4 3 25 25 O 1.42900 * 109.46195 * 302.44330 * 24 23 4 26 26 C 1.42906 * 114.09472 * 61.16044 * 25 24 23 27 27 C 1.53094 * 109.41596 * 298.84144 * 26 25 24 28 28 H 1.08002 * 119.99859 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00334 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99859 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47740 * 5.00288 * 3 2 1 32 32 H 1.09000 * 109.47078 * 245.00119 * 3 2 1 33 33 H 0.96995 * 120.00018 * 0.27749 * 7 5 4 34 34 H 1.09000 * 109.47212 * 300.00355 * 8 7 5 35 35 H 1.09001 * 109.46577 * 60.00430 * 8 7 5 36 36 H 1.09000 * 109.47486 * 300.00065 * 9 8 7 37 37 H 1.09001 * 109.47362 * 60.00788 * 9 8 7 38 38 H 1.00901 * 111.00013 * 303.95615 * 10 9 8 39 39 H 1.08997 * 109.47334 * 299.99788 * 11 10 9 40 40 H 1.09004 * 109.47141 * 60.00372 * 11 10 9 41 41 H 0.97003 * 120.00436 * 359.97438 * 14 12 11 42 42 H 0.96997 * 120.00382 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.51992 * 296.84871 * 23 4 3 44 44 H 1.08999 * 109.52214 * 57.02973 * 23 4 3 45 45 H 1.09003 * 109.45698 * 182.45201 * 24 23 4 46 46 H 1.08998 * 109.46608 * 62.45139 * 24 23 4 47 47 H 1.09002 * 109.47798 * 178.86018 * 26 25 24 48 48 H 1.08996 * 109.49464 * 58.83139 * 26 25 24 49 49 H 1.09003 * 109.51956 * 297.70380 * 27 26 25 50 50 H 1.08996 * 109.57496 * 177.54615 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 2.2655 1.1983 2.4703 6 8 2.3232 2.0757 3.3056 7 7 1.5132 0.1028 2.6945 8 6 0.7655 -0.0284 3.9476 9 6 0.0010 -1.3537 3.9488 10 7 -0.7492 -1.4850 5.2050 11 6 -1.4968 -2.7489 5.2420 12 6 -2.2516 -2.8482 6.5426 13 8 -2.1746 -1.9537 7.3583 14 7 -3.0121 -3.9308 6.7995 15 6 -3.6992 -4.0209 7.9825 16 1 -3.6307 -3.2245 8.7088 17 6 -4.4828 -5.1374 8.2475 18 7 -4.5658 -6.1066 7.3641 19 14 -5.4183 -5.2604 9.8597 20 1 -5.1598 -4.0470 10.6759 21 1 -6.8729 -5.3681 9.5809 22 1 -4.9665 -6.4635 10.6037 23 6 4.0293 0.1747 1.0550 24 6 5.0448 0.2592 2.2000 25 8 5.7035 1.5267 2.1596 26 6 4.8278 2.6446 2.3197 27 6 3.8050 2.6572 1.1806 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8499 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6212 1.4026 -0.9314 33 1 1.4702 -0.6007 2.0282 34 1 1.4590 -0.0086 4.7883 35 1 0.0608 0.7982 4.0383 36 1 -0.6925 -1.3739 3.1081 37 1 0.7060 -2.1800 3.8583 38 1 -0.1362 -1.4043 6.0024 39 1 -2.2004 -2.7795 4.4101 40 1 -0.8018 -3.5847 5.1611 41 1 -3.0739 -4.6460 6.1471 42 1 -5.1125 -6.8862 7.5493 43 1 3.4934 -0.7729 1.1097 44 1 4.5505 0.2447 0.1003 45 1 5.7815 -0.5368 2.0914 46 1 4.5277 0.1484 3.1531 47 1 5.4081 3.5670 2.2974 48 1 4.3077 2.5654 3.2743 49 1 4.3218 2.7774 0.2285 50 1 3.1089 3.4835 1.3241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149305894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:27 Heat of formation + Delta-G solvation = -129.264933 kcal Electronic energy + Delta-G solvation = -29770.780763 eV Core-core repulsion = 25604.098724 eV Total energy + Delta-G solvation = -4166.682039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.10143 -40.18363 -39.27933 -37.49004 -37.12254 -36.00155 -35.15945 -33.69452 -33.27786 -32.09556 -30.55589 -28.69109 -27.71202 -25.82040 -24.81905 -24.46919 -23.31990 -22.75385 -21.12216 -20.63745 -20.50334 -19.92313 -17.99040 -17.65410 -17.40091 -17.26878 -17.00169 -16.86961 -16.55457 -16.27951 -16.03792 -15.71871 -15.68822 -15.33322 -15.17275 -14.96983 -14.78697 -14.40898 -14.08544 -13.97128 -13.68969 -13.53784 -13.36863 -13.23889 -13.17001 -12.94376 -12.62976 -12.51356 -12.45310 -12.40848 -12.34932 -12.13388 -12.12410 -11.60799 -11.52542 -11.38854 -10.75227 -10.47127 -10.37499 -10.24395 -10.02426 -9.96489 -9.40135 -8.47938 -5.96390 1.31782 1.35897 1.41645 1.55537 1.61224 2.02726 2.04684 2.29913 2.93046 3.00535 3.19468 3.43226 3.51279 3.63507 3.72586 3.83849 3.96692 4.00733 4.08833 4.20049 4.25012 4.30538 4.30648 4.43439 4.49087 4.51619 4.58927 4.60975 4.65489 4.72142 4.80046 4.83608 4.88460 4.92473 5.00526 5.03217 5.06657 5.13435 5.19284 5.38843 5.40755 5.72688 5.83299 5.85860 6.06087 6.21860 6.29694 6.50785 6.59211 7.12000 7.22277 7.55258 8.10956 8.69545 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.001830 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.075912 B =15297.068023 C =15808.696646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.178 4.178 3 C -0.077 4.077 4 C -0.068 4.068 5 C 0.517 3.483 6 O -0.579 6.579 7 N -0.709 5.709 8 C 0.126 3.874 9 C 0.060 3.940 10 N -0.685 5.685 11 C 0.068 3.932 12 C 0.435 3.565 13 O -0.626 6.626 14 N -0.572 5.572 15 C -0.333 4.333 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.919 5.919 19 Si 0.992 3.008 20 H -0.275 1.275 21 H -0.271 1.271 22 H -0.270 1.270 23 C -0.138 4.138 24 C 0.049 3.951 25 O -0.397 6.397 26 C 0.047 3.953 27 C -0.127 4.127 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.136 0.864 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.412 0.588 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.345 0.655 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.398 0.602 42 H 0.278 0.722 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.028 0.972 47 H 0.101 0.899 48 H 0.047 0.953 49 H 0.099 0.901 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.829 8.572 -22.786 30.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.196 4.196 3 C -0.114 4.114 4 C -0.072 4.072 5 C 0.305 3.695 6 O -0.459 6.459 7 N -0.364 5.364 8 C 0.001 3.999 9 C -0.070 4.070 10 N -0.318 5.318 11 C -0.064 4.064 12 C 0.223 3.777 13 O -0.512 6.512 14 N -0.209 5.209 15 C -0.463 4.463 16 H 0.095 0.905 17 C -0.212 4.212 18 N -0.559 5.559 19 Si 0.816 3.184 20 H -0.200 1.200 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.175 4.175 24 C -0.027 4.027 25 O -0.317 6.317 26 C -0.030 4.030 27 C -0.165 4.165 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.154 0.846 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.253 0.747 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.164 0.836 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.232 0.768 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.133 0.867 46 H 0.046 0.954 47 H 0.119 0.881 48 H 0.065 0.935 49 H 0.118 0.882 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.453 9.965 -21.898 29.722 hybrid contribution -0.469 -1.238 0.856 1.577 sum 16.983 8.727 -21.042 28.414 Atomic orbital electron populations 1.24088 0.96268 1.02535 0.98882 1.23085 0.96072 0.98893 1.01523 1.20788 0.97165 0.96330 0.97115 1.20918 0.95675 0.98453 0.92106 1.21039 0.78757 0.81032 0.88714 1.90665 1.64942 1.41830 1.48497 1.46098 1.47739 1.22191 1.20362 1.21038 0.94429 0.97948 0.86440 1.22060 0.96451 0.95556 0.92889 1.59912 1.31918 1.34992 1.04959 1.21528 0.97871 0.91828 0.95162 1.20940 0.83712 0.82816 0.90279 1.90508 1.68396 1.41170 1.51162 1.41920 1.41910 1.18887 1.18223 1.19682 1.25142 1.05136 0.96346 0.90507 1.26019 0.98209 0.94564 1.02444 1.69661 1.40898 1.08950 1.36435 0.84888 0.77963 0.78212 0.77378 1.19982 1.19580 1.19507 1.22384 0.96299 0.97604 1.01215 1.22792 0.96753 0.86265 0.96917 1.87885 1.35133 1.14714 1.93930 1.22815 0.92347 0.89569 0.98224 1.22031 0.97969 0.95929 1.00582 0.89462 0.87037 0.84637 0.91775 0.87403 0.74691 0.92888 0.92588 0.88886 0.92591 0.83644 0.87241 0.90900 0.76819 0.91258 0.88365 0.87518 0.86662 0.95388 0.88089 0.93461 0.88217 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 13.92 67.79 0.94 -0.81 16 2 C -0.18 -1.35 5.81 25.65 0.15 -1.20 16 3 C -0.08 -0.70 4.73 29.85 0.14 -0.55 16 4 C -0.07 -0.89 0.51 -52.81 -0.03 -0.92 16 5 C 0.52 10.57 5.11 87.66 0.45 11.02 16 6 O -0.58 -17.17 13.85 -3.04 -0.04 -17.21 16 7 N -0.71 -12.02 4.77 -463.05 -2.21 -14.22 16 8 C 0.13 2.79 5.93 86.38 0.51 3.31 16 9 C 0.06 1.19 5.80 86.30 0.50 1.69 16 10 N -0.68 -20.57 6.13 -517.92 -3.17 -23.75 16 11 C 0.07 2.19 6.17 85.56 0.53 2.72 16 12 C 0.43 20.40 7.82 87.66 0.69 21.09 16 13 O -0.63 -34.90 15.78 -3.08 -0.05 -34.94 16 14 N -0.57 -28.94 5.29 -306.98 -1.62 -30.56 16 15 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 16 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 17 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 18 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 19 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 C -0.14 -1.28 4.54 30.75 0.14 -1.14 16 24 C 0.05 0.73 6.62 72.07 0.48 1.21 16 25 O -0.40 -7.82 10.77 -148.98 -1.60 -9.42 16 26 C 0.05 0.90 6.55 72.01 0.47 1.37 16 27 C -0.13 -1.87 4.56 30.68 0.14 -1.73 16 28 H 0.09 1.04 7.84 -2.91 -0.02 1.02 16 29 H 0.11 0.89 8.06 -2.91 -0.02 0.86 16 30 H 0.14 0.46 6.76 -2.91 -0.02 0.44 16 31 H 0.06 0.75 7.79 -2.39 -0.02 0.73 16 32 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.41 4.61 4.89 -92.71 -0.45 4.16 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.34 11.19 8.43 -89.69 -0.76 10.44 16 39 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 42 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 43 H 0.10 0.53 6.08 -2.39 -0.01 0.52 16 44 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.03 0.53 7.38 -2.39 -0.02 0.51 16 47 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.05 1.20 5.81 -2.39 -0.01 1.18 16 49 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.07 1.20 8.02 -2.39 -0.02 1.18 16 Total: -1.00 -75.30 397.74 -0.97 -76.27 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -0.98 Total: 39.84 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 6.39 Total: 17.76 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -6.72 Total: -117.14 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -1.69 Total: -61.58 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -75.30 -0.97 -76.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149305894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.996 kcal (2) G-P(sol) polarization free energy of solvation -75.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds