Wall clock time and date at job start Sat Apr 11 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99987 * 2 1 4 4 C 1.53006 * 109.46974 * 125.00102 * 3 2 1 5 5 C 1.50696 * 109.46974 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00508 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99868 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00082 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46964 * 179.97438 * 8 7 5 10 10 H 1.09004 * 108.71182 * 306.75189 * 9 8 7 11 11 C 1.54172 * 108.74403 * 188.62800 * 9 8 7 12 12 N 1.48525 * 111.93782 * 197.82928 * 11 9 8 13 13 C 1.46897 * 110.99816 * 192.46622 * 12 11 9 14 14 C 1.50700 * 109.47159 * 194.17398 * 13 12 11 15 15 O 1.21293 * 119.99725 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00216 * 179.97438 * 14 13 12 17 17 C 1.37102 * 120.00136 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00158 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00123 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00118 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00012 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 269.99991 * 21 19 17 23 23 H 1.48503 * 109.47399 * 29.99481 * 21 19 17 24 24 H 1.48498 * 109.47295 * 150.00088 * 21 19 17 25 25 C 1.44071 * 114.18381 * 318.84860 * 12 11 9 26 26 C 1.54011 * 108.26629 * 93.31153 * 25 12 11 27 27 C 1.46283 * 112.02730 * 280.50133 * 26 25 12 28 28 O 1.39990 * 108.74683 * 65.00083 * 9 8 7 29 29 H 1.08002 * 119.99846 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99972 * 0.02562 * 1 2 3 31 31 H 1.08008 * 119.99686 * 180.02562 * 2 1 3 32 32 H 1.08992 * 109.47391 * 5.00140 * 3 2 1 33 33 H 1.09001 * 109.47164 * 244.99801 * 3 2 1 34 34 H 1.09004 * 109.46746 * 60.00127 * 4 3 2 35 35 H 1.09000 * 109.47158 * 300.00340 * 4 3 2 36 36 H 0.96998 * 119.99873 * 359.97438 * 7 5 4 37 37 H 1.09005 * 109.46910 * 59.99929 * 8 7 5 38 38 H 1.09000 * 109.47135 * 299.99990 * 8 7 5 39 39 H 1.09002 * 108.98691 * 77.19133 * 11 9 8 40 40 H 1.09002 * 108.98671 * 318.45993 * 11 9 8 41 41 H 1.09000 * 109.47527 * 74.17419 * 13 12 11 42 42 H 1.08998 * 109.47193 * 314.17154 * 13 12 11 43 43 H 0.97001 * 120.00302 * 0.02562 * 16 14 13 44 44 H 0.97006 * 119.99833 * 180.02562 * 20 19 17 45 45 H 1.09008 * 109.70010 * 213.00403 * 25 12 11 46 46 H 1.08997 * 109.70456 * 333.61320 * 25 12 11 47 47 H 1.09006 * 108.97284 * 41.15440 * 26 25 12 48 48 H 1.08997 * 108.97158 * 159.84056 * 26 25 12 49 49 H 1.09003 * 109.10697 * 180.14128 * 27 26 25 50 50 H 1.09005 * 109.10214 * 299.17628 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7890 2.6378 1.1813 6 8 3.5705 3.4643 0.3210 7 7 4.7062 2.8864 2.1371 8 6 5.4387 4.1551 2.1371 9 6 6.4103 4.1829 3.3186 10 1 5.8567 3.9647 4.2319 11 6 7.0111 5.5982 3.4328 12 7 8.2486 5.6111 4.2540 13 6 8.6386 6.9853 4.5968 14 6 10.0530 6.9912 5.1168 15 8 10.6748 5.9527 5.1947 16 7 10.6270 8.1503 5.4954 17 6 11.9136 8.1556 5.9690 18 1 12.4673 7.2309 6.0384 19 6 12.5055 9.3507 6.3588 20 7 13.7389 9.3558 6.8123 21 14 11.5482 10.9502 6.2381 22 1 11.7726 11.5619 4.9037 23 1 10.1001 10.6753 6.4193 24 1 12.0106 11.8849 7.2953 25 6 8.1841 4.7837 5.4317 26 6 8.7610 3.3994 5.0812 27 6 7.7936 2.5668 4.3665 28 8 7.3769 3.1881 3.1298 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.7400 0.5064 1.0920 35 1 2.4773 1.2354 2.1130 36 1 4.8807 2.2256 2.8253 37 1 4.7338 4.9817 2.2272 38 1 5.9961 4.2528 1.2055 39 1 6.2753 6.2600 3.8896 40 1 7.2447 5.9660 2.4336 41 1 7.9679 7.3728 5.3637 42 1 8.5756 7.6132 3.7081 43 1 10.1296 8.9808 5.4334 44 1 14.1520 10.1902 7.0847 45 1 8.7721 5.2354 6.2307 46 1 7.1473 4.6797 5.7514 47 1 9.6445 3.5314 4.4565 48 1 9.0522 2.8935 6.0016 49 1 8.2485 1.6013 4.1451 50 1 6.9200 2.4115 4.9998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149329538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:31 Heat of formation + Delta-G solvation = -85.508742 kcal Electronic energy + Delta-G solvation = -29386.575676 eV Core-core repulsion = 25221.791047 eV Total energy + Delta-G solvation = -4164.784628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.36037 -39.63129 -38.35927 -36.06229 -35.79878 -35.09929 -33.87056 -32.97837 -31.67753 -31.28697 -30.10965 -27.47263 -26.61307 -25.18079 -24.16003 -22.84778 -21.65123 -20.79095 -20.20874 -20.17593 -19.33129 -18.30134 -17.44703 -17.03360 -16.77986 -16.24119 -15.89555 -15.69483 -15.40356 -15.22755 -14.90984 -14.51870 -14.31794 -14.13985 -13.90299 -13.78532 -13.41572 -13.25273 -13.11139 -12.89917 -12.81316 -12.55846 -12.41103 -12.38849 -12.02681 -11.83845 -11.49240 -11.44401 -11.30023 -11.13123 -10.89626 -10.72072 -10.59932 -10.53694 -10.21068 -9.97938 -9.77406 -9.64291 -9.53393 -9.36077 -8.53423 -8.16955 -7.90069 -6.30980 -3.82210 1.83317 2.37246 2.85565 3.01811 3.06851 3.14865 3.55040 3.73629 3.80462 4.10217 4.30569 4.48343 4.66860 4.68371 4.70944 4.76953 4.81768 4.87783 4.93071 4.93996 5.09588 5.15890 5.20309 5.26622 5.30433 5.36925 5.41170 5.52878 5.55694 5.56021 5.65984 5.72297 5.74494 5.78365 5.88502 5.94638 5.99836 6.11355 6.20704 6.24482 6.33973 6.66519 7.09221 7.17963 7.21521 7.45437 7.58868 7.93640 8.14664 8.60746 8.95724 9.42957 9.84184 10.82196 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029610 B = 0.001794 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.391179 B =15602.718096 C =16296.279007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.080 4.080 4 C -0.136 4.136 5 C 0.511 3.489 6 O -0.542 6.542 7 N -0.725 5.725 8 C 0.120 3.880 9 C 0.086 3.914 10 H 0.057 0.943 11 C 0.043 3.957 12 N -0.523 5.523 13 C 0.047 3.953 14 C 0.452 3.548 15 O -0.555 6.555 16 N -0.593 5.593 17 C -0.303 4.303 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.882 5.882 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.270 1.270 24 H -0.277 1.277 25 C 0.075 3.925 26 C -0.148 4.148 27 C 0.068 3.932 28 O -0.356 6.356 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.401 0.599 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.083 0.917 46 H 0.024 0.976 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.901 -15.090 -7.221 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.173 4.173 3 C -0.118 4.118 4 C -0.176 4.176 5 C 0.298 3.702 6 O -0.419 6.419 7 N -0.377 5.377 8 C -0.004 4.004 9 C 0.026 3.974 10 H 0.075 0.925 11 C -0.085 4.085 12 N -0.248 5.248 13 C -0.084 4.084 14 C 0.237 3.763 15 O -0.437 6.437 16 N -0.233 5.233 17 C -0.432 4.432 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.522 5.522 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.202 1.202 25 C -0.053 4.053 26 C -0.186 4.186 27 C -0.008 4.008 28 O -0.274 6.274 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.235 0.765 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.202 0.798 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.042 0.958 47 H 0.113 0.887 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -24.014 -15.320 -8.152 29.628 hybrid contribution -1.090 1.579 1.168 2.246 sum -25.103 -13.741 -6.984 29.458 Atomic orbital electron populations 1.23896 0.96002 1.01932 1.01150 1.22979 0.96094 0.98365 0.99905 1.20506 0.97784 0.95423 0.98039 1.21622 0.99078 0.95608 1.01262 1.20723 0.79553 0.89034 0.80910 1.90720 1.65887 1.48240 1.37073 1.45907 1.40638 1.20147 1.30972 1.21523 0.93372 0.86132 0.99380 1.21966 0.89087 0.89348 0.97023 0.92477 1.23010 0.90543 0.95673 0.99273 1.60065 1.32308 1.09477 1.22933 1.21887 0.96053 0.90067 1.00429 1.19639 0.88019 0.84585 0.84010 1.90559 1.64377 1.31418 1.57301 1.42216 1.14600 1.07265 1.59191 1.19416 0.87531 0.97501 1.38765 0.86292 1.25026 0.95851 0.97906 0.97356 1.69624 1.12297 1.27703 1.42618 0.86681 0.79743 0.84057 0.78932 1.19612 1.19601 1.20239 1.21654 0.97629 0.94059 0.91993 1.21095 1.01224 0.95237 1.01025 1.21717 0.97387 0.96310 0.85405 1.87851 1.58697 1.50669 1.30183 0.88484 0.88517 0.87275 0.90725 0.90108 0.88622 0.88829 0.76473 0.90271 0.90118 0.93968 0.89924 0.93501 0.89295 0.79789 0.91654 0.89854 0.95822 0.88719 0.91185 0.89351 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.06 14.32 29.01 0.42 -0.64 16 2 C -0.16 -0.89 9.52 -36.03 -0.34 -1.23 16 3 C -0.08 -0.55 4.95 -27.88 -0.14 -0.69 16 4 C -0.14 -0.81 5.68 -27.88 -0.16 -0.96 16 5 C 0.51 4.80 7.83 -10.99 -0.09 4.71 16 6 O -0.54 -7.32 15.98 5.55 0.09 -7.23 16 7 N -0.72 -5.91 5.48 -60.29 -0.33 -6.24 16 8 C 0.12 1.15 5.18 -4.04 -0.02 1.12 16 9 C 0.09 0.87 2.00 -26.12 -0.05 0.81 16 10 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 11 C 0.04 0.51 5.18 -2.31 -0.01 0.50 16 12 N -0.52 -8.07 3.90 -235.57 -0.92 -8.98 16 13 C 0.05 0.77 5.34 -4.98 -0.03 0.74 16 14 C 0.45 10.02 7.14 -10.99 -0.08 9.94 16 15 O -0.56 -14.30 14.47 5.55 0.08 -14.22 16 16 N -0.59 -13.92 5.09 -10.96 -0.06 -13.98 16 17 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 18 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 19 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 21 Si 0.88 19.29 27.74 -169.99 -4.71 14.58 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.07 1.10 4.48 -4.81 -0.02 1.08 16 26 C -0.15 -2.03 5.62 -29.40 -0.17 -2.19 16 27 C 0.07 0.71 6.21 33.96 0.21 0.92 16 28 O -0.36 -4.26 10.00 -32.90 -0.33 -4.59 16 29 H 0.10 0.43 8.06 -52.49 -0.42 0.00 16 30 H 0.10 0.52 7.84 -52.49 -0.41 0.11 16 31 H 0.11 0.50 8.06 -52.48 -0.42 0.08 16 32 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 33 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.40 2.39 8.45 -40.82 -0.35 2.04 16 37 H 0.08 0.73 8.12 -51.93 -0.42 0.30 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.43 8.04 -51.93 -0.42 0.01 16 40 H 0.08 0.98 7.98 -51.93 -0.41 0.56 16 41 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 42 H 0.09 1.29 8.03 -51.93 -0.42 0.88 16 43 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.08 1.47 6.26 -51.92 -0.33 1.14 16 46 H 0.02 0.29 6.89 -51.93 -0.36 -0.07 16 47 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.04 0.35 7.47 -51.93 -0.39 -0.04 16 LS Contribution 402.46 15.07 6.06 6.06 Total: -1.00 -34.62 402.46 -8.32 -42.94 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -8.25 Total: 10.06 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -0.72 Total: 6.50 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.53 Total: -54.11 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.16 Total: -26.04 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.62 -8.32 -42.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149329538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.568 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds